Wall clock time and date at job start Mon Mar 30 2020 04:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46974 * 2 1 4 4 C 1.52998 * 109.47637 * 120.00208 * 2 1 3 5 5 H 1.09000 * 109.47190 * 53.75934 * 4 2 1 6 6 C 1.50697 * 109.47273 * 173.76336 * 4 2 1 7 7 H 1.07999 * 120.00096 * 114.37052 * 6 4 2 8 8 C 1.37874 * 120.00114 * 294.64637 * 6 4 2 9 9 N 1.31511 * 120.00305 * 182.45510 * 8 6 4 10 10 Si 1.86809 * 119.99928 * 2.45265 * 8 6 4 11 11 H 1.48495 * 109.46900 * 94.49188 * 10 8 6 12 12 H 1.48500 * 109.46880 * 214.49246 * 10 8 6 13 13 H 1.48499 * 109.46701 * 334.48949 * 10 8 6 14 14 C 1.53001 * 109.47045 * 293.76230 * 4 2 1 15 15 N 1.46505 * 109.46815 * 67.31145 * 14 4 2 16 16 C 1.34777 * 119.99642 * 186.33628 * 15 14 4 17 17 O 1.21611 * 120.00307 * 0.02562 * 16 15 14 18 18 C 1.47398 * 119.99884 * 179.97438 * 16 15 14 19 19 C 1.47106 * 128.56858 * 179.97438 * 18 16 15 20 20 N 1.30007 * 105.33488 * 180.02562 * 19 18 16 21 21 O 1.20663 * 112.29591 * 359.97438 * 20 19 18 22 22 C 1.33482 * 113.16142 * 359.72193 * 21 20 19 23 23 H 1.08998 * 109.46727 * 310.25030 * 1 2 3 24 24 H 1.08994 * 109.47492 * 70.25322 * 1 2 3 25 25 H 1.09004 * 109.46741 * 190.25869 * 1 2 3 26 26 H 1.09007 * 109.47126 * 240.00327 * 2 1 3 27 27 H 1.09004 * 109.47331 * 182.24424 * 3 2 1 28 28 H 1.09001 * 109.47344 * 302.24058 * 3 2 1 29 29 H 1.08996 * 109.47277 * 62.24326 * 3 2 1 30 30 H 0.97001 * 120.00114 * 180.02562 * 9 8 6 31 31 H 1.08996 * 109.47310 * 187.31255 * 14 4 2 32 32 H 1.09005 * 109.47106 * 307.31573 * 14 4 2 33 33 H 0.96993 * 120.00030 * 6.33867 * 15 14 4 34 34 H 1.08002 * 127.32992 * 0.03720 * 19 18 16 35 35 H 1.08004 * 126.83525 * 180.31232 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5885 -1.7116 1.3068 6 6 3.5392 -0.8563 1.1743 7 1 4.1643 -0.3366 1.8853 8 6 4.1128 -1.6388 0.1948 9 7 5.4181 -1.7955 0.1588 10 14 3.0360 -2.4764 -1.0814 11 1 2.9512 -1.6237 -2.2941 12 1 3.6259 -3.7910 -1.4407 13 1 1.6750 -2.6805 -0.5235 14 6 1.6622 0.0847 2.4935 15 7 0.2070 0.0684 2.6625 16 6 -0.3685 0.8202 3.6217 17 8 0.3201 1.5124 4.3468 18 6 -1.8326 0.8043 3.7914 19 6 -2.6510 1.5419 4.7661 20 7 -3.8788 1.1952 4.5164 21 8 -3.9563 0.4114 3.6023 22 6 -2.7702 0.1017 3.0743 23 1 -0.3633 0.6640 0.7843 24 1 -0.3634 0.3472 -0.9672 25 1 -0.3633 -1.0113 0.1830 26 1 1.8934 -0.5138 -0.8901 27 1 3.1293 1.4428 -0.0402 28 1 1.6442 1.9678 -0.8692 29 1 1.7099 1.9446 0.9094 30 1 5.8217 -2.3457 -0.5307 31 1 2.1347 -0.3577 3.3704 32 1 2.0029 1.1136 2.3774 33 1 -0.3422 -0.4834 2.0840 34 1 -2.3053 2.2260 5.5271 35 1 -2.5842 -0.5699 2.2491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260201075.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:43 Heat of formation + Delta-G solvation = 27.399397 kcal Electronic energy + Delta-G solvation = -18876.238552 eV Core-core repulsion = 15878.146186 eV Total energy + Delta-G solvation = -2998.092366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.07409 -39.55659 -37.16235 -33.85525 -33.53156 -32.28471 -32.00605 -29.29254 -26.67129 -26.00132 -23.92597 -22.73468 -21.87794 -20.33767 -19.49557 -18.26687 -17.83031 -16.96076 -16.35537 -15.66303 -15.53403 -14.63178 -14.58198 -13.89422 -13.48508 -13.46029 -13.25670 -12.82589 -12.58539 -12.00842 -11.77085 -11.63742 -11.42090 -11.06272 -10.60165 -10.53586 -10.44092 -10.15915 -9.97007 -9.91148 -9.83901 -9.32105 -9.12924 -8.67557 -8.51562 -6.17153 -4.17638 0.93998 1.69500 2.77400 3.18711 3.26701 3.30565 3.32225 3.42941 4.02365 4.30692 4.32219 4.75761 5.01913 5.11393 5.25415 5.48363 5.62508 5.69046 5.71573 5.96212 6.10862 6.19097 6.30343 6.37426 6.45754 6.50874 6.61902 6.90105 7.05337 7.14720 7.26348 7.61624 7.70994 7.98308 8.33488 8.41045 8.86803 9.43457 10.95484 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.035057 B = 0.005650 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.508056 B = 4954.224575 C = 5260.142051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.135 4.135 4 C 0.009 3.991 5 H 0.034 0.966 6 C -0.510 4.510 7 H 0.077 0.923 8 C 0.075 3.925 9 N -0.895 5.895 10 Si 0.880 3.120 11 H -0.279 1.279 12 H -0.295 1.295 13 H -0.263 1.263 14 C 0.130 3.870 15 N -0.715 5.715 16 C 0.581 3.419 17 O -0.536 6.536 18 C -0.245 4.245 19 C 0.043 3.957 20 N -0.361 5.361 21 O 0.093 5.907 22 C -0.013 4.013 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.265 0.735 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.398 0.602 34 H 0.203 0.797 35 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.645 2.479 1.768 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.117 4.117 3 C -0.192 4.192 4 C -0.010 4.010 5 H 0.052 0.948 6 C -0.549 4.549 7 H 0.096 0.904 8 C -0.128 4.128 9 N -0.533 5.533 10 Si 0.709 3.291 11 H -0.205 1.205 12 H -0.223 1.223 13 H -0.188 1.188 14 C 0.008 3.992 15 N -0.368 5.368 16 C 0.367 3.633 17 O -0.414 6.414 18 C -0.253 4.253 19 C -0.140 4.140 20 N -0.066 5.066 21 O 0.034 5.966 22 C -0.095 4.095 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.235 0.765 34 H 0.220 0.780 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -16.158 3.178 2.699 16.688 hybrid contribution 0.220 -0.876 -1.381 1.650 sum -15.939 2.302 1.318 16.158 Atomic orbital electron populations 1.22347 0.98338 1.00460 1.01294 1.21467 0.92557 0.97377 1.00344 1.21757 1.02701 0.95299 0.99469 1.19492 0.98056 0.94081 0.89355 0.94766 1.20766 0.88454 1.29846 1.15798 0.90443 1.24949 0.94715 0.95709 0.97391 1.69887 1.09730 1.39331 1.34346 0.86923 0.81238 0.78637 0.82304 1.20537 1.22253 1.18754 1.21742 0.75866 1.01989 0.99588 1.46646 1.10601 1.45446 1.34087 1.16918 0.84530 0.80753 0.81145 1.90804 1.63659 1.41913 1.45042 1.22734 0.96258 1.04812 1.01474 1.26353 0.86816 1.00583 1.00209 1.73694 1.21633 1.07016 1.04293 1.84555 1.31057 1.45667 1.35370 1.26469 0.83929 0.99669 0.99422 0.91999 0.93587 0.93419 0.92514 0.91157 0.94896 0.93223 0.92528 0.91740 0.90658 0.76463 0.78011 0.75894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 7.61 37.16 0.28 -2.10 16 2 C -0.10 -1.85 2.17 -90.62 -0.20 -2.05 16 3 C -0.14 -2.46 8.53 37.16 0.32 -2.14 16 4 C 0.01 0.19 1.33 -91.77 -0.12 0.07 16 5 H 0.03 0.71 6.85 -51.93 -0.36 0.35 16 6 C -0.51 -13.08 8.16 -34.44 -0.28 -13.36 16 7 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 8 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 9 N -0.90 -26.07 13.96 55.43 0.77 -25.29 16 10 Si 0.88 20.25 24.53 -169.99 -4.17 16.08 16 11 H -0.28 -6.36 7.06 56.52 0.40 -5.96 16 12 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.26 -5.57 6.25 56.52 0.35 -5.21 16 14 C 0.13 2.41 4.69 -4.04 -0.02 2.40 16 15 N -0.71 -10.67 3.75 -61.39 -0.23 -10.90 16 16 C 0.58 9.00 7.81 -12.53 -0.10 8.90 16 17 O -0.54 -10.33 17.02 5.27 0.09 -10.24 16 18 C -0.25 -3.00 6.47 -102.89 -0.67 -3.67 16 19 C 0.04 0.51 12.37 -14.73 -0.18 0.33 16 20 N -0.36 -4.33 12.01 31.80 0.38 -3.95 16 21 O 0.09 0.97 11.06 18.68 0.21 1.18 16 22 C -0.01 -0.11 11.85 30.41 0.36 0.25 16 23 H 0.06 0.80 5.76 -51.93 -0.30 0.51 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.61 7.58 -51.93 -0.39 0.21 16 26 H 0.06 1.18 3.93 -51.92 -0.20 0.97 16 27 H 0.07 1.44 7.49 -51.93 -0.39 1.05 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.87 6.04 -51.93 -0.31 0.55 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 32 H 0.08 1.48 5.84 -51.93 -0.30 1.18 16 33 H 0.40 4.89 4.87 -40.82 -0.20 4.69 16 34 H 0.20 2.04 8.06 -52.49 -0.42 1.61 16 35 H 0.22 1.09 7.68 -52.48 -0.40 0.69 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -30.84 284.04 -3.53 -34.36 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.16 Total: 3.94 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.70 Total: -9.47 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.93 Total: -40.14 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.30 Total: -9.06 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.17 Total: 16.08 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.84 -3.53 -34.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260201075.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.763 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds