Wall clock time and date at job start Mon Mar 30 2020 03:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30178 * 126.79989 * 2 1 4 4 O 1.20918 * 111.60242 * 180.25169 * 3 2 1 5 5 C 1.34043 * 111.56945 * 359.74492 * 4 3 2 6 6 C 1.35451 * 106.44267 * 0.02562 * 5 4 3 7 7 C 1.50699 * 128.00576 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.47140 * 260.02246 * 7 6 5 9 9 C 1.47012 * 110.99766 * 46.36507 * 8 7 6 10 10 C 1.53101 * 109.25759 * 182.39278 * 9 8 7 11 11 O 1.43020 * 109.25539 * 303.15138 * 10 9 8 12 12 C 1.43017 * 113.73991 * 58.66940 * 11 10 9 13 13 C 1.47017 * 110.99718 * 170.00151 * 8 7 6 14 14 H 1.09002 * 109.50911 * 297.53634 * 13 8 7 15 15 C 1.50693 * 109.51227 * 57.63220 * 13 8 7 16 16 H 1.08006 * 119.99583 * 359.97438 * 15 13 8 17 17 C 1.37871 * 120.00277 * 179.97438 * 15 13 8 18 18 N 1.31516 * 120.00095 * 0.02562 * 17 15 13 19 19 Si 1.86809 * 120.00055 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46707 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47061 * 120.00009 * 19 17 15 22 22 H 1.48502 * 109.46849 * 240.00230 * 19 17 15 23 23 H 1.08997 * 109.47690 * 270.16828 * 1 2 3 24 24 H 1.09009 * 109.47347 * 30.16988 * 1 2 3 25 25 H 1.09004 * 109.47168 * 150.16699 * 1 2 3 26 26 H 1.07995 * 126.78137 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.47103 * 140.02347 * 7 6 5 28 28 H 1.09000 * 109.47247 * 20.02225 * 7 6 5 29 29 H 1.08994 * 109.50661 * 302.32919 * 9 8 7 30 30 H 1.09004 * 109.50589 * 62.46121 * 9 8 7 31 31 H 1.08997 * 109.50893 * 183.22014 * 10 9 8 32 32 H 1.08996 * 109.54147 * 63.10847 * 10 9 8 33 33 H 1.08998 * 109.50829 * 181.39011 * 12 11 10 34 34 H 1.09008 * 109.50218 * 61.26248 * 12 11 10 35 35 H 0.97001 * 119.99928 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4536 0.7254 -0.0049 5 6 3.6024 -0.6067 -0.0034 6 6 2.3539 -1.1320 0.0027 7 6 1.9590 -2.5863 0.0062 8 7 1.5931 -2.9976 -1.3558 9 6 2.5851 -2.5260 -2.3329 10 6 2.1353 -2.9238 -3.7413 11 8 1.9533 -4.3413 -3.7955 12 6 0.9934 -4.8349 -2.8573 13 6 1.4316 -4.4565 -1.4400 14 1 2.3804 -4.9416 -1.2108 15 6 0.3855 -4.9049 -0.4523 16 1 -0.1101 -4.1795 0.1760 17 6 0.0611 -6.2410 -0.3507 18 7 0.6649 -7.1244 -1.1154 19 14 -1.2352 -6.7970 0.8742 20 1 -1.7595 -5.6179 1.6091 21 1 -2.3474 -7.4629 0.1498 22 1 -0.6294 -7.7517 1.8368 23 1 -0.3634 0.0030 1.0276 24 1 -0.3634 0.8885 -0.5165 25 1 -0.3634 -0.8915 -0.5113 26 1 4.5338 -1.1534 -0.0073 27 1 1.1067 -2.7298 0.6704 28 1 2.7972 -3.1895 0.3551 29 1 2.6699 -1.4411 -2.2707 30 1 3.5523 -2.9803 -2.1179 31 1 2.8954 -2.6266 -4.4637 32 1 1.1944 -2.4268 -3.9775 33 1 0.9276 -5.9197 -2.9405 34 1 0.0191 -4.3934 -3.0671 35 1 0.4364 -8.0644 -1.0442 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260213412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:19 Heat of formation + Delta-G solvation = 23.110213 kcal Electronic energy + Delta-G solvation = -19335.938923 eV Core-core repulsion = 16337.660564 eV Total energy + Delta-G solvation = -2998.278359 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.70364 -38.70211 -35.79493 -34.10086 -33.09853 -31.53641 -29.91708 -28.47615 -27.67659 -25.43896 -23.96262 -22.37295 -21.09008 -20.86613 -19.26068 -17.41020 -17.16876 -16.61150 -15.55110 -15.22612 -14.73212 -14.42065 -14.05471 -13.81409 -13.57643 -13.16830 -12.98217 -12.79613 -12.36882 -12.19288 -12.01882 -11.62114 -11.08781 -10.94920 -10.80266 -10.66390 -10.40924 -10.30220 -9.79240 -9.60409 -9.31531 -9.07224 -8.75190 -8.43845 -7.38112 -6.19488 -4.24439 1.69103 2.45126 3.21063 3.29917 3.33047 3.46593 4.27485 4.42047 4.76094 4.83317 4.90577 5.14774 5.23562 5.42335 5.64793 5.69310 5.75607 5.78264 5.87243 5.92974 6.05175 6.22882 6.24499 6.33225 6.41690 6.51167 6.62828 6.82719 7.18238 7.41655 7.60896 7.78484 8.07035 8.10222 8.43430 8.48051 8.82442 9.41844 10.88511 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.007602 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.000438 B = 3682.400553 C = 4488.003723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.035 3.965 3 N -0.378 5.378 4 O 0.089 5.911 5 C -0.072 4.072 6 C -0.179 4.179 7 C 0.140 3.860 8 N -0.526 5.526 9 C 0.020 3.980 10 C 0.068 3.932 11 O -0.404 6.404 12 C 0.069 3.931 13 C 0.189 3.811 14 H 0.010 0.990 15 C -0.511 4.511 16 H 0.068 0.932 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.284 1.284 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.211 0.789 27 H 0.095 0.905 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.124 0.876 34 H 0.034 0.966 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.114 9.432 0.821 9.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 N -0.085 5.085 4 O 0.026 5.974 5 C -0.154 4.154 6 C -0.183 4.183 7 C 0.012 3.988 8 N -0.252 5.252 9 C -0.109 4.109 10 C -0.010 4.010 11 O -0.323 6.323 12 C -0.007 4.007 13 C 0.083 3.917 14 H 0.028 0.972 15 C -0.549 4.549 16 H 0.086 0.914 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.210 1.210 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.114 0.886 26 H 0.227 0.773 27 H 0.113 0.887 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.141 0.859 34 H 0.053 0.947 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.546 10.629 0.545 10.943 hybrid contribution 0.043 -1.476 1.042 1.808 sum 2.590 9.152 1.588 9.643 Atomic orbital electron populations 1.20195 0.85937 1.04263 1.03022 1.23519 0.99106 0.88163 1.01629 1.73791 0.89530 1.24420 1.20801 1.84760 1.21630 1.23054 1.68004 1.25775 1.00837 0.83569 1.05219 1.21583 0.91850 0.98532 1.06338 1.20254 1.00349 0.85376 0.92787 1.62421 1.43582 1.16829 1.02366 1.22718 0.94299 0.99468 0.94419 1.22422 0.99723 0.83782 0.95043 1.87917 1.63609 1.20085 1.60662 1.23137 0.88918 1.01363 0.87273 1.19905 0.96834 0.80437 0.94539 0.97240 1.21077 1.21371 0.92405 1.20047 0.91423 1.24987 0.96449 0.96590 0.96075 1.69851 1.41954 1.02241 1.38968 0.86400 0.81236 0.78719 0.80872 1.19615 1.20853 1.20996 0.90654 0.91222 0.88559 0.77257 0.88685 0.94105 0.91649 0.95323 0.90377 0.93573 0.85888 0.94747 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.39 36.00 0.37 -0.68 16 2 C 0.03 0.55 7.33 -82.10 -0.60 -0.05 16 3 N -0.38 -6.08 12.07 33.42 0.40 -5.67 16 4 O 0.09 1.30 11.20 17.17 0.19 1.49 16 5 C -0.07 -0.96 11.56 29.74 0.34 -0.62 16 6 C -0.18 -2.81 4.04 -104.43 -0.42 -3.23 16 7 C 0.14 2.54 5.21 -4.97 -0.03 2.51 16 8 N -0.53 -10.65 4.67 -229.16 -1.07 -11.72 16 9 C 0.02 0.36 5.07 -3.71 -0.02 0.34 16 10 C 0.07 1.25 7.01 37.21 0.26 1.51 16 11 O -0.40 -9.03 10.83 -35.23 -0.38 -9.41 16 12 C 0.07 1.67 6.02 37.21 0.22 1.89 16 13 C 0.19 4.54 1.93 -68.75 -0.13 4.41 16 14 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 15 C -0.51 -12.98 8.03 -34.45 -0.28 -13.26 16 16 H 0.07 1.69 6.56 -52.48 -0.34 1.35 16 17 C 0.06 1.59 5.31 -17.82 -0.09 1.49 16 18 N -0.89 -24.14 11.37 55.43 0.63 -23.51 16 19 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 25 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.21 2.06 8.06 -52.49 -0.42 1.63 16 27 H 0.10 1.81 6.72 -51.93 -0.35 1.46 16 28 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.07 1.09 6.29 -51.93 -0.33 0.77 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.12 3.25 6.19 -51.93 -0.32 2.93 16 34 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 288.24 15.07 4.34 4.34 Total: -1.00 -28.07 288.24 -5.97 -34.04 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.70 Total: 0.99 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.37 Total: -5.67 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.04 Total: -40.91 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.19 Total: -7.92 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.07 -5.97 -34.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.151 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds