Wall clock time and date at job start Mon Mar 30 2020 03:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30178 * 126.79989 * 2 1 4 4 O 1.20918 * 111.60242 * 180.25169 * 3 2 1 5 5 C 1.34043 * 111.56945 * 359.74492 * 4 3 2 6 6 C 1.35451 * 106.44267 * 0.02562 * 5 4 3 7 7 C 1.50699 * 128.00576 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.47140 * 260.02246 * 7 6 5 9 9 C 1.47012 * 110.99766 * 46.36507 * 8 7 6 10 10 C 1.53101 * 109.25759 * 182.39278 * 9 8 7 11 11 O 1.43020 * 109.25539 * 303.15138 * 10 9 8 12 12 C 1.43017 * 113.73991 * 58.66940 * 11 10 9 13 13 C 1.47017 * 110.99718 * 170.00151 * 8 7 6 14 14 H 1.09002 * 109.50911 * 297.53634 * 13 8 7 15 15 C 1.50693 * 109.51227 * 57.63220 * 13 8 7 16 16 H 1.08006 * 119.99583 * 359.97438 * 15 13 8 17 17 C 1.37871 * 120.00277 * 179.97438 * 15 13 8 18 18 N 1.31516 * 120.00095 * 0.02562 * 17 15 13 19 19 Si 1.86809 * 120.00055 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46707 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47061 * 120.00009 * 19 17 15 22 22 H 1.48502 * 109.46849 * 240.00230 * 19 17 15 23 23 H 1.08997 * 109.47690 * 270.16828 * 1 2 3 24 24 H 1.09009 * 109.47347 * 30.16988 * 1 2 3 25 25 H 1.09004 * 109.47168 * 150.16699 * 1 2 3 26 26 H 1.07995 * 126.78137 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.47103 * 140.02347 * 7 6 5 28 28 H 1.09000 * 109.47247 * 20.02225 * 7 6 5 29 29 H 1.08994 * 109.50661 * 302.32919 * 9 8 7 30 30 H 1.09004 * 109.50589 * 62.46121 * 9 8 7 31 31 H 1.08997 * 109.50893 * 183.22014 * 10 9 8 32 32 H 1.08996 * 109.54147 * 63.10847 * 10 9 8 33 33 H 1.08998 * 109.50829 * 181.39011 * 12 11 10 34 34 H 1.09008 * 109.50218 * 61.26248 * 12 11 10 35 35 H 0.97001 * 119.99928 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4536 0.7254 -0.0049 5 6 3.6024 -0.6067 -0.0034 6 6 2.3539 -1.1320 0.0027 7 6 1.9590 -2.5863 0.0062 8 7 1.5931 -2.9976 -1.3558 9 6 2.5851 -2.5260 -2.3329 10 6 2.1353 -2.9238 -3.7413 11 8 1.9533 -4.3413 -3.7955 12 6 0.9934 -4.8349 -2.8573 13 6 1.4316 -4.4565 -1.4400 14 1 2.3804 -4.9416 -1.2108 15 6 0.3855 -4.9049 -0.4523 16 1 -0.1101 -4.1795 0.1760 17 6 0.0611 -6.2410 -0.3507 18 7 0.6649 -7.1244 -1.1154 19 14 -1.2352 -6.7970 0.8742 20 1 -1.7595 -5.6179 1.6091 21 1 -2.3474 -7.4629 0.1498 22 1 -0.6294 -7.7517 1.8368 23 1 -0.3634 0.0030 1.0276 24 1 -0.3634 0.8885 -0.5165 25 1 -0.3634 -0.8915 -0.5113 26 1 4.5338 -1.1534 -0.0073 27 1 1.1067 -2.7298 0.6704 28 1 2.7972 -3.1895 0.3551 29 1 2.6699 -1.4411 -2.2707 30 1 3.5523 -2.9803 -2.1179 31 1 2.8954 -2.6266 -4.4637 32 1 1.1944 -2.4268 -3.9775 33 1 0.9276 -5.9197 -2.9405 34 1 0.0191 -4.3934 -3.0671 35 1 0.4364 -8.0644 -1.0442 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260213412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:19 Heat of formation + Delta-G solvation = 4.081126 kcal Electronic energy + Delta-G solvation = -19336.764086 eV Core-core repulsion = 16337.660564 eV Total energy + Delta-G solvation = -2999.103522 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.88958 -40.37369 -37.29782 -35.60850 -34.81257 -32.84344 -31.64538 -29.67656 -29.15648 -27.30152 -25.53319 -24.06181 -22.33749 -22.12114 -20.94564 -18.76512 -18.50913 -18.19860 -17.30743 -16.85645 -16.36028 -15.93354 -15.63955 -15.34812 -15.24108 -14.66346 -14.20218 -14.13120 -13.94819 -13.55420 -13.28376 -13.15077 -12.86513 -12.64258 -12.46229 -12.19062 -12.04368 -12.00428 -11.53686 -11.07060 -10.76807 -10.68282 -10.38601 -10.23630 -9.04370 -8.17469 -6.28938 0.56690 1.23566 1.43228 1.46464 1.57143 2.37939 2.40790 3.07278 3.12701 3.28301 3.38847 3.69129 3.97385 4.13168 4.21503 4.33945 4.42833 4.60745 4.62796 4.67572 4.70709 4.77017 4.83316 4.86896 4.92150 5.01188 5.09552 5.29844 5.31536 5.51369 5.67031 5.97286 6.23178 6.41848 6.62445 6.85243 7.33986 7.41209 8.90300 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.007602 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.000438 B = 3682.400553 C = 4488.003723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.027 3.973 3 N -0.394 5.394 4 O 0.093 5.907 5 C -0.042 4.042 6 C -0.204 4.204 7 C 0.150 3.850 8 N -0.530 5.530 9 C 0.025 3.975 10 C 0.060 3.940 11 O -0.418 6.418 12 C 0.081 3.919 13 C 0.199 3.801 14 H -0.028 1.028 15 C -0.519 4.519 16 H 0.068 0.932 17 C 0.015 3.985 18 N -0.921 5.921 19 Si 0.962 3.038 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.283 1.283 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.247 0.753 27 H 0.080 0.920 28 H 0.035 0.965 29 H 0.086 0.914 30 H 0.029 0.971 31 H 0.114 0.886 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.028 0.972 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 10.840 1.198 11.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.131 4.131 3 N -0.102 5.102 4 O 0.030 5.970 5 C -0.124 4.124 6 C -0.208 4.208 7 C 0.022 3.978 8 N -0.256 5.256 9 C -0.104 4.104 10 C -0.017 4.017 11 O -0.338 6.338 12 C 0.004 3.996 13 C 0.091 3.909 14 H -0.010 1.010 15 C -0.558 4.558 16 H 0.086 0.914 17 C -0.184 4.184 18 N -0.560 5.560 19 Si 0.788 3.212 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.209 1.209 23 H 0.106 0.894 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.263 0.737 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.132 0.868 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.047 0.953 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.919 12.071 0.922 12.453 hybrid contribution 0.011 -1.849 0.895 2.054 sum 2.930 10.223 1.817 10.788 Atomic orbital electron populations 1.20206 0.85115 1.04070 1.03821 1.23790 0.99922 0.88115 1.01313 1.73802 0.89966 1.24658 1.21811 1.84758 1.21124 1.23503 1.67571 1.26353 1.01326 0.82971 1.01777 1.21316 0.93108 0.97083 1.09303 1.20021 0.99509 0.87025 0.91233 1.62338 1.45011 1.14128 1.04132 1.22732 0.93581 1.00481 0.93577 1.22755 1.01188 0.81478 0.96238 1.87876 1.62990 1.22772 1.60116 1.22768 0.89098 0.99829 0.87887 1.19615 0.94599 0.82568 0.94085 1.01017 1.21326 1.21531 0.92628 1.20268 0.91359 1.25743 0.98260 0.96754 0.97643 1.69981 1.43296 1.02447 1.40323 0.85435 0.78755 0.78319 0.78729 1.18752 1.20740 1.20876 0.89403 0.90054 0.89984 0.73664 0.90156 0.94669 0.89576 0.95324 0.86786 0.93179 0.88707 0.95337 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 10.39 71.23 0.74 -1.22 16 2 C 0.03 0.81 7.33 43.57 0.32 1.13 16 3 N -0.39 -11.77 12.07 -49.57 -0.60 -12.37 16 4 O 0.09 2.44 11.20 71.61 0.80 3.24 16 5 C -0.04 -0.99 11.56 67.18 0.78 -0.21 16 6 C -0.20 -6.00 4.04 -19.74 -0.08 -6.08 16 7 C 0.15 5.33 5.21 85.56 0.45 5.78 16 8 N -0.53 -21.22 4.67 -878.92 -4.11 -25.33 16 9 C 0.02 0.85 5.07 86.32 0.44 1.29 16 10 C 0.06 2.10 7.01 72.02 0.50 2.60 16 11 O -0.42 -18.61 10.83 -148.98 -1.61 -20.22 16 12 C 0.08 3.98 6.02 72.01 0.43 4.42 16 13 C 0.20 9.70 1.93 44.18 0.09 9.79 16 14 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 16 15 C -0.52 -26.74 8.03 25.60 0.21 -26.53 16 16 H 0.07 3.44 6.56 -2.91 -0.02 3.42 16 17 C 0.02 0.81 5.31 84.65 0.45 1.25 16 18 N -0.92 -50.99 11.37 21.45 0.24 -50.75 16 19 Si 0.96 41.48 29.54 68.60 2.03 43.50 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 26 H 0.25 3.77 8.06 -2.91 -0.02 3.75 16 27 H 0.08 3.06 6.72 -2.38 -0.02 3.04 16 28 H 0.04 1.28 8.08 -2.39 -0.02 1.26 16 29 H 0.09 2.63 6.29 -2.39 -0.02 2.61 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 5.20 6.19 -2.39 -0.01 5.18 16 34 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -60.41 288.24 2.16 -58.25 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.09 Total: 11.46 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 4.32 Total: -7.78 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -4.46 Total: -88.45 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.81 Total: -16.98 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -60.41 2.16 -58.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260213412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.332 kcal (2) G-P(sol) polarization free energy of solvation -60.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds