Wall clock time and date at job start Mon Mar 30 2020 04:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47099 * 2 1 4 4 C 1.53003 * 109.46599 * 240.00251 * 2 1 3 5 5 H 1.08994 * 109.47074 * 305.48450 * 4 2 1 6 6 C 1.50707 * 109.46903 * 185.49213 * 4 2 1 7 7 H 1.08002 * 120.00015 * 245.48972 * 6 4 2 8 8 C 1.37875 * 119.99930 * 65.48021 * 6 4 2 9 9 N 1.31516 * 120.00377 * 355.22843 * 8 6 4 10 10 Si 1.86797 * 119.99844 * 175.22122 * 8 6 4 11 11 H 1.48495 * 109.47282 * 90.00475 * 10 8 6 12 12 H 1.48503 * 109.47075 * 210.00481 * 10 8 6 13 13 H 1.48497 * 109.47132 * 330.00303 * 10 8 6 14 14 N 1.46496 * 109.47204 * 65.49469 * 4 2 1 15 15 C 1.34779 * 119.99905 * 274.99370 * 14 4 2 16 16 O 1.21286 * 119.99592 * 0.02562 * 15 14 4 17 17 C 1.50697 * 120.00053 * 180.02562 * 15 14 4 18 18 C 1.50709 * 109.47000 * 179.97438 * 17 15 14 19 19 C 1.34327 * 126.16096 * 125.00126 * 18 17 15 20 20 O 1.34753 * 107.11335 * 180.02562 * 19 18 17 21 21 C 1.33972 * 107.74950 * 359.97438 * 20 19 18 22 22 N 1.30251 * 108.76454 * 359.72690 * 21 20 19 23 23 H 1.09003 * 109.47045 * 59.99662 * 1 2 3 24 24 H 1.08993 * 109.47056 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46852 * 299.99729 * 1 2 3 26 26 H 1.08992 * 109.47447 * 120.00162 * 2 1 3 27 27 H 1.08994 * 109.46871 * 175.04434 * 3 2 1 28 28 H 1.09003 * 109.47095 * 295.04547 * 3 2 1 29 29 H 1.09001 * 109.47023 * 55.04221 * 3 2 1 30 30 H 0.96994 * 119.99932 * 179.97438 * 9 8 6 31 31 H 0.96999 * 120.00186 * 95.00069 * 14 4 2 32 32 H 1.08999 * 109.47201 * 300.00080 * 17 15 14 33 33 H 1.09003 * 109.47177 * 60.00575 * 17 15 14 34 34 H 1.07999 * 126.44503 * 0.02562 * 19 18 17 35 35 H 1.08002 * 125.61568 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.5986 -1.7165 -1.2998 6 6 3.5409 -0.8401 -1.1833 7 1 4.1560 -0.3187 -1.9017 8 6 4.1287 -1.6144 -0.2056 9 7 3.3867 -2.1731 0.7255 10 14 5.9791 -1.8701 -0.2036 11 1 6.6253 -0.8031 0.6021 12 1 6.2950 -3.1958 0.3864 13 1 6.4880 -1.8147 -1.5975 14 7 1.6626 0.0415 -2.4418 15 6 0.4462 -0.1321 -2.9957 16 8 -0.3360 -0.9195 -2.5067 17 6 0.0582 0.6521 -4.2227 18 6 -1.3404 0.2748 -4.6385 19 6 -2.3691 1.1198 -4.8179 20 8 -3.4324 0.3777 -5.1847 21 6 -3.0422 -0.9033 -5.2251 22 7 -1.7818 -0.9676 -4.9027 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.1264 1.4438 0.0888 28 1 1.7510 1.9301 -0.9311 29 1 1.6060 1.9813 0.8423 30 1 3.8003 -2.7182 1.4130 31 1 2.2881 0.6714 -2.8327 32 1 0.0961 1.7184 -3.9995 33 1 0.7512 0.4256 -5.0330 34 1 -2.3480 2.1922 -4.6919 35 1 -3.6682 -1.7435 -5.4868 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260252185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:29 Heat of formation + Delta-G solvation = -47.456587 kcal Electronic energy + Delta-G solvation = -18859.689103 eV Core-core repulsion = 15858.350738 eV Total energy + Delta-G solvation = -3001.338365 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.13769 -40.62028 -37.51119 -35.80035 -34.23791 -33.77773 -32.47678 -29.50914 -28.28883 -27.63580 -24.78604 -23.60977 -22.65422 -21.34174 -20.19356 -18.91121 -18.23723 -17.64211 -17.08965 -16.93537 -16.52061 -16.00158 -15.73277 -15.31470 -14.63945 -14.45766 -14.34048 -14.03743 -13.70638 -13.24958 -13.04459 -12.86216 -12.75191 -12.69663 -12.18467 -11.97752 -11.92890 -11.73480 -11.32293 -11.29450 -10.91125 -10.57651 -10.47106 -9.72563 -9.45893 -8.11740 -6.26222 0.66781 1.44714 1.46676 1.56112 1.81546 2.02273 2.13846 2.41240 2.84829 3.18834 3.37015 3.95162 4.06870 4.35061 4.49147 4.50961 4.57044 4.60319 4.66743 4.93258 4.97258 5.05044 5.09155 5.16114 5.31317 5.41222 5.47668 5.62635 5.69547 5.79134 5.84869 6.04670 6.25566 6.82820 6.93626 7.13326 7.40647 7.75733 8.94326 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.035971 B = 0.005321 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.213914 B = 5261.127388 C = 5476.399262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.101 4.101 3 C -0.113 4.113 4 C 0.287 3.713 5 H -0.013 1.013 6 C -0.534 4.534 7 H 0.072 0.928 8 C 0.015 3.985 9 N -0.918 5.918 10 Si 0.964 3.036 11 H -0.271 1.271 12 H -0.291 1.291 13 H -0.265 1.265 14 N -0.705 5.705 15 C 0.496 3.504 16 O -0.578 6.578 17 C -0.054 4.054 18 C -0.028 4.028 19 C -0.060 4.060 20 O -0.212 6.212 21 C 0.167 3.833 22 N -0.517 5.517 23 H 0.048 0.952 24 H 0.012 0.988 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.404 0.596 32 H 0.146 0.854 33 H 0.119 0.881 34 H 0.255 0.745 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.876 10.566 -10.968 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.121 4.121 3 C -0.170 4.170 4 C 0.183 3.817 5 H 0.004 0.996 6 C -0.572 4.572 7 H 0.090 0.910 8 C -0.185 4.185 9 N -0.557 5.557 10 Si 0.789 3.211 11 H -0.196 1.196 12 H -0.217 1.217 13 H -0.189 1.189 14 N -0.355 5.355 15 C 0.283 3.717 16 O -0.458 6.458 17 C -0.094 4.094 18 C -0.147 4.147 19 C -0.130 4.130 20 O -0.098 6.098 21 C -0.060 4.060 22 N -0.246 5.246 23 H 0.066 0.934 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.239 0.761 32 H 0.164 0.836 33 H 0.137 0.863 34 H 0.271 0.729 35 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -8.090 9.344 -10.445 16.182 hybrid contribution 0.785 -0.125 0.302 0.850 sum -7.305 9.219 -10.143 15.532 Atomic orbital electron populations 1.21707 0.97134 0.98859 0.99621 1.21384 0.92966 0.97040 1.00755 1.21487 1.00354 0.94830 1.00347 1.18253 0.93437 0.88806 0.81180 0.99551 1.21496 0.91392 1.30018 1.14297 0.91003 1.25718 1.02707 0.95222 0.94830 1.70086 1.37157 1.33478 1.14934 0.85474 0.79855 0.77229 0.78552 1.19638 1.21748 1.18927 1.46179 1.15426 1.43761 1.30148 1.21008 0.81876 0.83212 0.85617 1.90686 1.52090 1.38438 1.64631 1.20067 0.91425 1.02370 0.95497 1.21415 0.98333 0.88866 1.06041 1.25403 0.83566 0.99750 1.04327 1.84483 1.38673 1.20090 1.66588 1.28879 0.91755 0.85766 0.99564 1.70312 1.12122 1.25910 1.16210 0.93352 0.96825 0.93992 0.91906 0.93598 0.92452 0.93905 0.92923 0.76134 0.83585 0.86343 0.72872 0.70158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 7.81 71.98 0.56 -4.72 16 2 C -0.10 -4.86 2.63 -10.79 -0.03 -4.88 16 3 C -0.11 -4.42 8.80 71.98 0.63 -3.79 16 4 C 0.29 14.56 1.88 44.25 0.08 14.65 16 5 H -0.01 -0.85 7.58 -2.39 -0.02 -0.86 16 6 C -0.53 -27.77 7.76 25.60 0.20 -27.57 16 7 H 0.07 3.48 7.72 -2.91 -0.02 3.46 16 8 C 0.01 0.81 5.35 84.65 0.45 1.26 16 9 N -0.92 -53.39 11.53 21.45 0.25 -53.15 16 10 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 14 N -0.71 -28.02 3.95 -446.09 -1.76 -29.78 16 15 C 0.50 19.28 6.41 87.66 0.56 19.84 16 16 O -0.58 -28.42 12.73 -3.05 -0.04 -28.46 16 17 C -0.05 -1.39 6.27 29.10 0.18 -1.21 16 18 C -0.03 -0.79 5.87 41.26 0.24 -0.54 16 19 C -0.06 -1.27 12.06 66.93 0.81 -0.46 16 20 O -0.21 -4.77 10.78 -3.79 -0.04 -4.81 16 21 C 0.17 3.98 13.23 130.48 1.73 5.70 16 22 N -0.52 -17.12 10.70 -304.06 -3.25 -20.37 16 23 H 0.05 2.10 5.63 -2.39 -0.01 2.08 16 24 H 0.01 0.66 7.88 -2.39 -0.02 0.64 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 3.50 6.23 -2.39 -0.01 3.48 16 27 H 0.04 1.88 7.56 -2.39 -0.02 1.86 16 28 H 0.06 1.94 7.27 -2.39 -0.02 1.92 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.40 13.13 8.50 -92.71 -0.79 12.34 16 32 H 0.15 2.40 8.11 -2.39 -0.02 2.38 16 33 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.26 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.28 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -77.03 293.92 2.92 -74.11 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.31 Total: 19.79 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 5.42 Total: -1.72 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -4.77 Total: -103.30 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.08 Total: -33.27 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -77.03 2.92 -74.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260252185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.654 kcal (2) G-P(sol) polarization free energy of solvation -77.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds