Wall clock time and date at job start Mon Mar 30 2020 04:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 H 1.09000 * 109.47050 * 59.99996 * 4 2 1 6 6 C 1.50697 * 109.47239 * 180.02562 * 4 2 1 7 7 H 1.07994 * 120.00496 * 120.00058 * 6 4 2 8 8 C 1.37887 * 119.99690 * 299.99759 * 6 4 2 9 9 N 1.31515 * 119.99477 * 180.02562 * 8 6 4 10 10 Si 1.86789 * 119.99942 * 359.97438 * 8 6 4 11 11 H 1.48505 * 109.47181 * 90.00449 * 10 8 6 12 12 H 1.48500 * 109.47253 * 209.99840 * 10 8 6 13 13 H 1.48501 * 109.47537 * 330.00117 * 10 8 6 14 14 N 1.46500 * 109.46998 * 300.00051 * 4 2 1 15 15 C 1.34770 * 119.99955 * 84.99585 * 14 4 2 16 16 O 1.21279 * 120.00155 * 0.02562 * 15 14 4 17 17 C 1.50699 * 119.99961 * 180.02562 * 15 14 4 18 18 C 1.50710 * 109.47232 * 180.02562 * 17 15 14 19 19 C 1.34335 * 126.16389 * 124.99888 * 18 17 15 20 20 O 1.34747 * 107.11060 * 180.02562 * 19 18 17 21 21 C 1.33971 * 107.75558 * 359.97438 * 20 19 18 22 22 N 1.30250 * 108.76051 * 359.73071 * 21 20 19 23 23 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 24 24 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 26 26 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 29 29 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 30 30 H 0.97006 * 119.99768 * 179.97438 * 9 8 6 31 31 H 0.96997 * 120.00110 * 265.00363 * 14 4 2 32 32 H 1.09002 * 109.47098 * 300.00283 * 17 15 14 33 33 H 1.08999 * 109.47446 * 60.00244 * 17 15 14 34 34 H 1.07999 * 126.44355 * 0.02562 * 19 18 17 35 35 H 1.08006 * 125.61941 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -1.7490 1.2492 6 6 3.5470 -0.7208 1.2496 7 1 4.0867 -0.2531 2.0597 8 6 4.2368 -1.3175 0.2155 9 7 5.5519 -1.3174 0.2161 10 14 3.3033 -2.1270 -1.1853 11 1 3.0552 -1.1292 -2.2568 12 1 4.1066 -3.2503 -1.7315 13 1 2.0061 -2.6453 -0.6815 14 7 1.5516 -0.0307 2.4454 15 6 0.3297 -0.3165 2.9368 16 8 -0.3655 -1.1457 2.3891 17 6 -0.1729 0.3943 4.1670 18 6 -1.5542 -0.1040 4.5060 19 6 -1.9449 -0.6165 5.6847 20 8 -3.2483 -0.9366 5.5653 21 6 -3.6354 -0.6172 4.3232 22 7 -2.6193 -0.1102 3.6852 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 6.0373 -1.7375 -0.5112 31 1 2.1077 0.6323 2.8837 32 1 0.4996 0.1959 5.0015 33 1 -0.2097 1.4671 3.9772 34 1 -1.3299 -0.7473 6.5628 35 1 -4.6277 -0.7529 3.9191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260252191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:30 Heat of formation + Delta-G solvation = -13.107840 kcal Electronic energy + Delta-G solvation = -18974.578330 eV Core-core repulsion = 15974.729438 eV Total energy + Delta-G solvation = -2999.848892 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.24425 -39.23394 -36.10080 -34.77097 -32.48975 -32.22185 -31.41361 -28.35441 -27.06170 -26.13144 -22.75586 -22.54022 -21.54912 -20.20124 -18.85549 -17.57428 -17.09411 -16.42691 -15.75269 -15.53014 -15.14892 -15.06591 -14.20643 -13.99785 -13.37001 -12.90324 -12.81870 -12.70164 -12.59529 -11.98411 -11.71778 -11.21929 -11.03257 -10.97739 -10.84922 -10.45440 -10.37445 -10.28400 -9.90005 -9.39299 -9.16812 -9.08718 -8.74748 -8.68267 -7.95312 -6.18689 -4.19177 1.52583 2.77627 2.92466 3.26079 3.36004 3.37452 3.43281 4.06004 4.19886 4.34678 4.84697 4.95925 5.15832 5.46757 5.48674 5.55253 5.85491 5.88316 5.91891 6.02443 6.08475 6.32906 6.43670 6.61273 6.65811 6.85448 7.00179 7.12836 7.14241 7.35135 7.38218 7.58730 7.82051 8.20948 8.59464 8.79764 9.05827 9.43650 10.93388 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.036473 B = 0.005733 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.513227 B = 4883.071029 C = 5027.844351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C -0.127 4.127 4 C 0.249 3.751 5 H 0.046 0.954 6 C -0.527 4.527 7 H 0.080 0.920 8 C 0.080 3.920 9 N -0.893 5.893 10 Si 0.878 3.122 11 H -0.275 1.275 12 H -0.295 1.295 13 H -0.261 1.261 14 N -0.702 5.702 15 C 0.505 3.495 16 O -0.533 6.533 17 C -0.066 4.066 18 C 0.014 3.986 19 C -0.078 4.078 20 O -0.211 6.211 21 C 0.162 3.838 22 N -0.457 5.457 23 H 0.029 0.971 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.042 0.958 30 H 0.266 0.734 31 H 0.393 0.607 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.213 0.787 35 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.174 4.529 9.094 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 C -0.184 4.184 4 C 0.145 3.855 5 H 0.064 0.936 6 C -0.565 4.565 7 H 0.098 0.902 8 C -0.123 4.123 9 N -0.531 5.531 10 Si 0.708 3.292 11 H -0.202 1.202 12 H -0.222 1.222 13 H -0.186 1.186 14 N -0.351 5.351 15 C 0.289 3.711 16 O -0.410 6.410 17 C -0.107 4.107 18 C -0.106 4.106 19 C -0.149 4.149 20 O -0.097 6.097 21 C -0.066 4.066 22 N -0.185 5.185 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.227 0.773 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.230 0.770 35 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -13.539 4.059 7.995 16.239 hybrid contribution -0.054 -0.353 -0.046 0.360 sum -13.593 3.705 7.950 16.177 Atomic orbital electron populations 1.21884 0.96142 1.01401 0.99774 1.21822 0.94363 0.97424 0.99793 1.21616 1.02487 0.95336 0.99001 1.19107 0.94410 0.92030 0.79940 0.93587 1.20994 0.88102 1.38200 1.09169 0.90211 1.24779 0.94657 0.95148 0.97709 1.69868 1.06142 1.44137 1.32908 0.86975 0.80271 0.79039 0.82951 1.20163 1.22244 1.18578 1.46080 1.15991 1.42726 1.30286 1.20058 0.82247 0.83618 0.85127 1.90697 1.56064 1.33916 1.60315 1.20045 0.90312 1.01562 0.98734 1.21109 0.95676 1.03482 0.90367 1.24696 0.82739 1.05576 1.01849 1.84453 1.25654 1.65041 1.34534 1.28069 1.00873 0.98543 0.79069 1.70345 0.98699 1.17321 1.32133 0.95211 0.92907 0.92816 0.92562 0.91096 0.95126 0.93903 0.92374 0.77349 0.87679 0.87759 0.77023 0.73827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 7.72 37.16 0.29 -2.55 16 2 C -0.11 -2.56 2.29 -90.62 -0.21 -2.76 16 3 C -0.13 -2.54 8.79 37.16 0.33 -2.22 16 4 C 0.25 5.83 1.59 -69.08 -0.11 5.72 16 5 H 0.05 1.22 6.63 -51.93 -0.34 0.88 16 6 C -0.53 -13.85 8.04 -34.44 -0.28 -14.13 16 7 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 8 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 9 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 10 Si 0.88 21.93 24.37 -169.99 -4.14 17.78 16 11 H -0.27 -6.69 6.87 56.52 0.39 -6.30 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 14 N -0.70 -13.47 4.19 -54.93 -0.23 -13.70 16 15 C 0.51 9.33 6.18 -10.99 -0.07 9.27 16 16 O -0.53 -11.94 12.71 5.56 0.07 -11.87 16 17 C -0.07 -0.87 6.27 -29.03 -0.18 -1.06 16 18 C 0.01 0.20 5.87 -82.81 -0.49 -0.29 16 19 C -0.08 -0.90 12.06 29.36 0.35 -0.54 16 20 O -0.21 -2.49 10.78 5.37 0.06 -2.43 16 21 C 0.16 1.90 13.23 52.09 0.69 2.59 16 22 N -0.46 -7.18 10.70 -11.17 -0.12 -7.29 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 1.19 7.53 -51.93 -0.39 0.80 16 25 H 0.05 1.11 5.78 -51.93 -0.30 0.81 16 26 H 0.06 1.35 3.27 -51.93 -0.17 1.18 16 27 H 0.07 1.54 7.22 -51.93 -0.37 1.17 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.39 6.55 8.54 -40.82 -0.35 6.20 16 32 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.21 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.25 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 286.21 15.07 4.31 4.31 Total: -1.00 -34.11 286.21 -3.51 -37.62 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.46 Total: 4.84 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 0.23 Total: -3.83 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.42 Total: -46.42 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.13 Total: -14.30 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.14 Total: 17.78 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.11 -3.51 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260252191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.512 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds