Wall clock time and date at job start Mon Mar 30 2020 04:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 H 1.09000 * 109.47050 * 59.99996 * 4 2 1 6 6 C 1.50697 * 109.47239 * 180.02562 * 4 2 1 7 7 H 1.07994 * 120.00496 * 120.00058 * 6 4 2 8 8 C 1.37887 * 119.99690 * 299.99759 * 6 4 2 9 9 N 1.31515 * 119.99477 * 180.02562 * 8 6 4 10 10 Si 1.86789 * 119.99942 * 359.97438 * 8 6 4 11 11 H 1.48505 * 109.47181 * 90.00449 * 10 8 6 12 12 H 1.48500 * 109.47253 * 209.99840 * 10 8 6 13 13 H 1.48501 * 109.47537 * 330.00117 * 10 8 6 14 14 N 1.46500 * 109.46998 * 300.00051 * 4 2 1 15 15 C 1.34770 * 119.99955 * 84.99585 * 14 4 2 16 16 O 1.21279 * 120.00155 * 0.02562 * 15 14 4 17 17 C 1.50699 * 119.99961 * 180.02562 * 15 14 4 18 18 C 1.50710 * 109.47232 * 180.02562 * 17 15 14 19 19 C 1.34335 * 126.16389 * 124.99888 * 18 17 15 20 20 O 1.34747 * 107.11060 * 180.02562 * 19 18 17 21 21 C 1.33971 * 107.75558 * 359.97438 * 20 19 18 22 22 N 1.30250 * 108.76051 * 359.73071 * 21 20 19 23 23 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 24 24 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 26 26 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 29 29 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 30 30 H 0.97006 * 119.99768 * 179.97438 * 9 8 6 31 31 H 0.96997 * 120.00110 * 265.00363 * 14 4 2 32 32 H 1.09002 * 109.47098 * 300.00283 * 17 15 14 33 33 H 1.08999 * 109.47446 * 60.00244 * 17 15 14 34 34 H 1.07999 * 126.44355 * 0.02562 * 19 18 17 35 35 H 1.08006 * 125.61941 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -1.7490 1.2492 6 6 3.5470 -0.7208 1.2496 7 1 4.0867 -0.2531 2.0597 8 6 4.2368 -1.3175 0.2155 9 7 5.5519 -1.3174 0.2161 10 14 3.3033 -2.1270 -1.1853 11 1 3.0552 -1.1292 -2.2568 12 1 4.1066 -3.2503 -1.7315 13 1 2.0061 -2.6453 -0.6815 14 7 1.5516 -0.0307 2.4454 15 6 0.3297 -0.3165 2.9368 16 8 -0.3655 -1.1457 2.3891 17 6 -0.1729 0.3943 4.1670 18 6 -1.5542 -0.1040 4.5060 19 6 -1.9449 -0.6165 5.6847 20 8 -3.2483 -0.9366 5.5653 21 6 -3.6354 -0.6172 4.3232 22 7 -2.6193 -0.1102 3.6852 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 6.0373 -1.7375 -0.5112 31 1 2.1077 0.6323 2.8837 32 1 0.4996 0.1959 5.0015 33 1 -0.2097 1.4671 3.9772 34 1 -1.3299 -0.7473 6.5628 35 1 -4.6277 -0.7529 3.9191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260252191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:30 Heat of formation + Delta-G solvation = -40.728515 kcal Electronic energy + Delta-G solvation = -18975.776052 eV Core-core repulsion = 15974.729438 eV Total energy + Delta-G solvation = -3001.046614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.14135 -40.78996 -37.76418 -35.81397 -34.37088 -33.98874 -32.50900 -29.84965 -28.53764 -27.77450 -24.43291 -23.59964 -22.80649 -21.60115 -20.54099 -19.00969 -18.28160 -17.65165 -17.39710 -17.12846 -16.58299 -16.04460 -15.78288 -15.26645 -15.01861 -14.71726 -14.45068 -14.19505 -13.81985 -13.49798 -13.20492 -13.00374 -12.83305 -12.66505 -12.25686 -12.10267 -11.98260 -11.80456 -11.33711 -11.23374 -11.10416 -10.77801 -10.59623 -9.73242 -9.63087 -8.35399 -6.36781 0.66355 1.24971 1.32830 1.41967 1.80025 1.94320 2.13709 2.26629 2.67409 3.01614 3.35469 3.93837 4.00987 4.13344 4.26016 4.30385 4.39186 4.57928 4.65451 4.80254 4.84334 4.96680 4.99756 5.06792 5.13567 5.20836 5.35920 5.40591 5.44968 5.48392 5.65901 5.78139 6.21078 6.64159 6.92216 7.01329 7.25822 7.62983 8.79770 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.036473 B = 0.005733 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.513227 B = 4883.071029 C = 5027.844351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.118 4.118 3 C -0.119 4.119 4 C 0.257 3.743 5 H 0.011 0.989 6 C -0.514 4.514 7 H 0.062 0.938 8 C 0.037 3.963 9 N -0.932 5.932 10 Si 0.924 3.076 11 H -0.263 1.263 12 H -0.295 1.295 13 H -0.269 1.269 14 N -0.700 5.700 15 C 0.502 3.498 16 O -0.574 6.574 17 C -0.054 4.054 18 C -0.027 4.027 19 C -0.063 4.063 20 O -0.213 6.213 21 C 0.167 3.833 22 N -0.510 5.510 23 H 0.051 0.949 24 H 0.028 0.972 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.268 0.732 31 H 0.407 0.593 32 H 0.142 0.858 33 H 0.124 0.876 34 H 0.252 0.748 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.682 5.542 10.131 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.137 4.137 3 C -0.177 4.177 4 C 0.152 3.848 5 H 0.029 0.971 6 C -0.552 4.552 7 H 0.080 0.920 8 C -0.163 4.163 9 N -0.572 5.572 10 Si 0.753 3.247 11 H -0.188 1.188 12 H -0.222 1.222 13 H -0.194 1.194 14 N -0.350 5.350 15 C 0.289 3.711 16 O -0.454 6.454 17 C -0.094 4.094 18 C -0.146 4.146 19 C -0.133 4.133 20 O -0.099 6.099 21 C -0.060 4.060 22 N -0.239 5.239 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.242 0.758 32 H 0.160 0.840 33 H 0.142 0.858 34 H 0.268 0.732 35 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -15.048 5.103 9.054 18.288 hybrid contribution 0.361 -0.683 -0.277 0.820 sum -14.687 4.420 8.777 17.672 Atomic orbital electron populations 1.21721 0.94951 1.00230 1.00873 1.21784 0.95278 0.98512 0.98123 1.21528 1.01003 0.94058 1.01068 1.18686 0.92394 0.91168 0.82587 0.97075 1.21180 0.89660 1.36489 1.07920 0.92011 1.25353 0.95112 0.95996 0.99811 1.69958 1.07369 1.45894 1.33980 0.86226 0.78772 0.78518 0.81215 1.18847 1.22217 1.19387 1.45912 1.16877 1.42848 1.29377 1.20971 0.81111 0.82965 0.86082 1.90680 1.57007 1.35827 1.61864 1.20048 0.90640 1.01788 0.96888 1.21379 0.95887 1.05767 0.91532 1.25391 0.82615 1.03111 1.02174 1.84485 1.25974 1.64891 1.34586 1.28901 1.01577 0.96798 0.78706 1.70295 1.00203 1.19446 1.33933 0.93038 0.95234 0.92630 0.94285 0.93217 0.93051 0.91904 0.92276 0.75760 0.83996 0.85775 0.73202 0.70138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 7.72 71.98 0.56 -4.37 16 2 C -0.12 -5.14 2.29 -10.79 -0.02 -5.16 16 3 C -0.12 -4.55 8.79 71.98 0.63 -3.92 16 4 C 0.26 12.05 1.59 44.25 0.07 12.12 16 5 H 0.01 0.62 6.63 -2.39 -0.02 0.60 16 6 C -0.51 -27.31 8.04 25.60 0.21 -27.11 16 7 H 0.06 3.45 7.98 -2.91 -0.02 3.43 16 8 C 0.04 2.07 5.45 84.66 0.46 2.53 16 9 N -0.93 -55.50 13.96 21.45 0.30 -55.20 16 10 Si 0.92 45.74 24.37 68.60 1.67 47.41 16 11 H -0.26 -12.37 6.87 99.48 0.68 -11.68 16 12 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 13 H -0.27 -13.51 6.53 99.48 0.65 -12.87 16 14 N -0.70 -26.16 4.19 -446.10 -1.87 -28.03 16 15 C 0.50 17.92 6.18 87.66 0.54 18.46 16 16 O -0.57 -25.66 12.71 -3.03 -0.04 -25.70 16 17 C -0.05 -1.28 6.27 29.10 0.18 -1.10 16 18 C -0.03 -0.70 5.87 41.27 0.24 -0.46 16 19 C -0.06 -1.25 12.06 66.93 0.81 -0.44 16 20 O -0.21 -4.50 10.78 -3.71 -0.04 -4.54 16 21 C 0.17 3.60 13.23 130.48 1.73 5.33 16 22 N -0.51 -15.31 10.70 -304.06 -3.25 -18.56 16 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.03 1.31 7.53 -2.39 -0.02 1.30 16 25 H 0.05 2.23 5.78 -2.39 -0.01 2.22 16 26 H 0.04 1.85 3.27 -2.39 -0.01 1.84 16 27 H 0.05 2.10 7.22 -2.38 -0.02 2.08 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 2.11 7.60 -2.39 -0.02 2.09 16 30 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 31 H 0.41 12.91 8.54 -92.71 -0.79 12.12 16 32 H 0.14 2.27 8.11 -2.39 -0.02 2.25 16 33 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.25 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.28 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -75.55 286.21 2.41 -73.14 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.24 Total: 15.61 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.40 Total: -4.13 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -4.82 Total: -101.79 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.08 Total: -30.24 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.67 Total: 47.41 kcal Total: -75.55 2.41 -73.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260252191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.415 kcal (2) G-P(sol) polarization free energy of solvation -75.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds