Wall clock time and date at job start Mon Mar 30 2020 04:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47173 * 2 1 4 4 C 1.53003 * 109.46839 * 240.00094 * 2 1 3 5 5 C 1.52990 * 109.47392 * 295.00265 * 4 2 1 6 6 H 1.08996 * 109.47648 * 56.37381 * 5 4 2 7 7 C 1.50700 * 109.47079 * 176.37913 * 5 4 2 8 8 H 1.08001 * 120.00362 * 94.94494 * 7 5 4 9 9 C 1.37873 * 119.99934 * 274.94067 * 7 5 4 10 10 N 1.31519 * 120.00174 * 184.93891 * 9 7 5 11 11 Si 1.86800 * 120.00160 * 4.94104 * 9 7 5 12 12 H 1.48497 * 109.47279 * 84.79932 * 11 9 7 13 13 H 1.48498 * 109.47573 * 204.80700 * 11 9 7 14 14 H 1.48510 * 109.47043 * 324.80540 * 11 9 7 15 15 N 1.46508 * 109.46919 * 296.37586 * 5 4 2 16 16 C 1.34769 * 119.99931 * 155.00457 * 15 5 4 17 17 O 1.21493 * 120.00481 * 359.97438 * 16 15 5 18 18 C 1.48335 * 120.00115 * 179.97438 * 16 15 5 19 19 C 1.42269 * 126.94133 * 179.97438 * 18 16 15 20 20 C 1.35309 * 103.92518 * 180.02562 * 19 18 16 21 21 O 1.34022 * 106.66863 * 359.97438 * 20 19 18 22 22 N 1.20906 * 111.84086 * 359.70933 * 21 20 19 23 23 H 1.09003 * 109.46739 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46842 * 299.99521 * 1 2 3 25 25 H 1.09001 * 109.46883 * 59.99567 * 1 2 3 26 26 H 1.08991 * 109.46924 * 120.00454 * 2 1 3 27 27 H 1.09007 * 109.46792 * 60.00089 * 3 2 1 28 28 H 1.08996 * 109.46873 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47282 * 300.00477 * 3 2 1 30 30 H 1.09008 * 109.46981 * 55.00350 * 4 2 1 31 31 H 1.09000 * 109.46706 * 174.99843 * 4 2 1 32 32 H 0.97005 * 120.00015 * 179.97438 * 10 9 7 33 33 H 0.96997 * 119.99596 * 334.99719 * 15 5 4 34 34 H 1.08008 * 128.03862 * 0.02562 * 19 18 16 35 35 H 1.08002 * 126.67232 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.5535 -2.2709 -1.0774 7 6 2.0596 -2.8859 -2.4586 8 1 3.0019 -3.4121 -2.4984 9 6 1.2448 -2.8462 -3.5701 10 7 1.5676 -3.5286 -4.6470 11 14 -0.3179 -1.8229 -3.5465 12 1 0.0049 -0.4181 -3.9036 13 1 -1.2853 -2.3737 -4.5293 14 1 -0.9156 -1.8633 -2.1877 15 7 2.2891 -2.8342 -0.0432 16 6 1.7413 -3.9285 0.5213 17 8 0.7050 -4.3851 0.0811 18 6 2.4036 -4.5757 1.6801 19 6 1.9583 -5.7282 2.3854 20 6 2.8988 -5.9085 3.3413 21 8 3.8017 -4.9310 3.1816 22 7 3.5197 -4.2050 2.2568 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6054 -0.2616 -2.1371 31 1 3.1263 -0.6443 -1.2952 32 1 0.9941 -3.5009 -5.4288 33 1 3.1163 -2.4695 0.3084 34 1 1.0748 -6.3214 2.2008 35 1 2.9183 -6.6886 4.0880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260271443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:39 Heat of formation + Delta-G solvation = 12.828885 kcal Electronic energy + Delta-G solvation = -18889.451952 eV Core-core repulsion = 15890.727761 eV Total energy + Delta-G solvation = -2998.724191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.93778 -38.96412 -36.59817 -33.76108 -33.66492 -32.35478 -31.61393 -29.09085 -26.82508 -25.16648 -24.54376 -22.81397 -21.19763 -20.00711 -19.21775 -18.26117 -17.61606 -17.02839 -16.41979 -15.30090 -14.59302 -14.42967 -14.17547 -13.73021 -13.64476 -13.35635 -13.20399 -12.75143 -12.18189 -11.80227 -11.68687 -11.51171 -11.43676 -11.17431 -10.86422 -10.38740 -10.26314 -10.16153 -9.93297 -9.77406 -9.69699 -9.57914 -9.35280 -8.58390 -7.96515 -6.11055 -4.11675 1.36222 1.89625 3.18891 3.27137 3.36710 3.39108 3.65263 3.85116 4.30783 4.39516 4.89956 5.14233 5.15178 5.33372 5.39135 5.42900 5.47898 5.65943 5.92216 5.97225 6.05608 6.10778 6.17481 6.35017 6.42216 6.44243 6.60647 6.74236 6.90580 7.11968 7.37019 7.62460 8.05824 8.33126 8.45222 8.91145 8.93437 9.50296 11.01833 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.007753 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.990894 B = 3610.629530 C = 4462.238229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.144 4.144 4 C -0.122 4.122 5 C 0.231 3.769 6 H 0.063 0.937 7 C -0.523 4.523 8 H 0.075 0.925 9 C 0.080 3.920 10 N -0.893 5.893 11 Si 0.867 3.133 12 H -0.273 1.273 13 H -0.288 1.288 14 H -0.255 1.255 15 N -0.688 5.688 16 C 0.587 3.413 17 O -0.522 6.522 18 C -0.015 4.015 19 C -0.186 4.186 20 C -0.071 4.071 21 O 0.112 5.888 22 N -0.337 5.337 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.265 0.735 33 H 0.391 0.609 34 H 0.179 0.821 35 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.381 1.567 15.369 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C -0.202 4.202 4 C -0.160 4.160 5 C 0.129 3.871 6 H 0.081 0.919 7 C -0.562 4.562 8 H 0.093 0.907 9 C -0.123 4.123 10 N -0.530 5.530 11 Si 0.695 3.305 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.180 1.180 15 N -0.337 5.337 16 C 0.368 3.632 17 O -0.397 6.397 18 C -0.175 4.175 19 C -0.208 4.208 20 C -0.152 4.152 21 O 0.039 5.961 22 N -0.040 5.040 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.224 0.776 34 H 0.196 0.804 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.390 2.242 14.539 14.777 hybrid contribution -1.022 -0.083 -0.042 1.026 sum 0.368 2.159 14.498 14.662 Atomic orbital electron populations 1.21932 0.95957 1.02164 1.00676 1.21251 0.95659 0.95642 0.99639 1.21842 1.00701 0.96626 1.00987 1.22230 1.00989 0.96569 0.96227 1.19416 0.95076 0.88493 0.84121 0.91889 1.21193 1.06982 1.34064 0.93918 0.90729 1.24889 0.97261 0.94719 0.95443 1.69901 1.38723 1.40269 1.04146 0.87059 0.84030 0.80609 0.78846 1.19887 1.21388 1.17986 1.46147 1.26779 1.27812 1.32941 1.16797 0.84476 0.81155 0.80729 1.90775 1.23261 1.63142 1.62484 1.24097 0.94083 0.98305 1.01036 1.22812 1.03036 0.98542 0.96400 1.25964 0.90601 0.95858 1.02743 1.84775 1.42867 1.30567 1.37903 1.74155 1.15424 1.14505 0.99906 0.92090 0.93537 0.93103 0.91705 0.93502 0.92903 0.92947 0.91284 0.91939 0.92501 0.77621 0.80372 0.76290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.95 37.16 0.33 -2.20 16 2 C -0.10 -1.72 2.86 -90.62 -0.26 -1.98 16 3 C -0.14 -2.01 9.19 37.16 0.34 -1.66 16 4 C -0.12 -2.43 3.99 -26.73 -0.11 -2.53 16 5 C 0.23 5.43 1.38 -69.08 -0.10 5.33 16 6 H 0.06 1.60 3.42 -51.93 -0.18 1.43 16 7 C -0.52 -14.83 9.16 -34.44 -0.32 -15.15 16 8 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 10 N -0.89 -27.66 13.96 55.43 0.77 -26.89 16 11 Si 0.87 21.71 25.89 -169.99 -4.40 17.31 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.26 -6.21 6.14 56.52 0.35 -5.86 16 15 N -0.69 -14.53 4.38 -55.73 -0.24 -14.77 16 16 C 0.59 12.70 7.81 -12.11 -0.09 12.60 16 17 O -0.52 -13.16 16.61 5.37 0.09 -13.07 16 18 C -0.02 -0.26 7.19 -82.53 -0.59 -0.86 16 19 C -0.19 -2.50 10.99 -39.08 -0.43 -2.93 16 20 C -0.07 -0.69 12.28 29.69 0.36 -0.33 16 21 O 0.11 1.42 11.18 17.23 0.19 1.61 16 22 N -0.34 -5.35 11.84 33.29 0.39 -4.96 16 23 H 0.06 1.16 6.49 -51.93 -0.34 0.83 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 1.06 7.55 -51.93 -0.39 0.66 16 27 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.45 6.38 -51.92 -0.33 1.12 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.39 7.29 8.34 -40.82 -0.34 6.95 16 34 H 0.18 2.15 8.06 -52.48 -0.42 1.73 16 35 H 0.22 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 297.00 15.07 4.48 4.48 Total: -1.00 -33.64 297.00 -4.25 -37.89 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.57 Total: 5.86 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -0.95 Total: -7.46 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.92 Total: -46.62 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.28 Total: -11.46 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.40 Total: 17.31 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.64 -4.25 -37.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260271443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.719 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds