Wall clock time and date at job start Mon Mar 30 2020 04:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47173 * 2 1 4 4 C 1.53003 * 109.46839 * 240.00094 * 2 1 3 5 5 C 1.52990 * 109.47392 * 295.00265 * 4 2 1 6 6 H 1.08996 * 109.47648 * 56.37381 * 5 4 2 7 7 C 1.50700 * 109.47079 * 176.37913 * 5 4 2 8 8 H 1.08001 * 120.00362 * 94.94494 * 7 5 4 9 9 C 1.37873 * 119.99934 * 274.94067 * 7 5 4 10 10 N 1.31519 * 120.00174 * 184.93891 * 9 7 5 11 11 Si 1.86800 * 120.00160 * 4.94104 * 9 7 5 12 12 H 1.48497 * 109.47279 * 84.79932 * 11 9 7 13 13 H 1.48498 * 109.47573 * 204.80700 * 11 9 7 14 14 H 1.48510 * 109.47043 * 324.80540 * 11 9 7 15 15 N 1.46508 * 109.46919 * 296.37586 * 5 4 2 16 16 C 1.34769 * 119.99931 * 155.00457 * 15 5 4 17 17 O 1.21493 * 120.00481 * 359.97438 * 16 15 5 18 18 C 1.48335 * 120.00115 * 179.97438 * 16 15 5 19 19 C 1.42269 * 126.94133 * 179.97438 * 18 16 15 20 20 C 1.35309 * 103.92518 * 180.02562 * 19 18 16 21 21 O 1.34022 * 106.66863 * 359.97438 * 20 19 18 22 22 N 1.20906 * 111.84086 * 359.70933 * 21 20 19 23 23 H 1.09003 * 109.46739 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46842 * 299.99521 * 1 2 3 25 25 H 1.09001 * 109.46883 * 59.99567 * 1 2 3 26 26 H 1.08991 * 109.46924 * 120.00454 * 2 1 3 27 27 H 1.09007 * 109.46792 * 60.00089 * 3 2 1 28 28 H 1.08996 * 109.46873 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47282 * 300.00477 * 3 2 1 30 30 H 1.09008 * 109.46981 * 55.00350 * 4 2 1 31 31 H 1.09000 * 109.46706 * 174.99843 * 4 2 1 32 32 H 0.97005 * 120.00015 * 179.97438 * 10 9 7 33 33 H 0.96997 * 119.99596 * 334.99719 * 15 5 4 34 34 H 1.08008 * 128.03862 * 0.02562 * 19 18 16 35 35 H 1.08002 * 126.67232 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.5535 -2.2709 -1.0774 7 6 2.0596 -2.8859 -2.4586 8 1 3.0019 -3.4121 -2.4984 9 6 1.2448 -2.8462 -3.5701 10 7 1.5676 -3.5286 -4.6470 11 14 -0.3179 -1.8229 -3.5465 12 1 0.0049 -0.4181 -3.9036 13 1 -1.2853 -2.3737 -4.5293 14 1 -0.9156 -1.8633 -2.1877 15 7 2.2891 -2.8342 -0.0432 16 6 1.7413 -3.9285 0.5213 17 8 0.7050 -4.3851 0.0811 18 6 2.4036 -4.5757 1.6801 19 6 1.9583 -5.7282 2.3854 20 6 2.8988 -5.9085 3.3413 21 8 3.8017 -4.9310 3.1816 22 7 3.5197 -4.2050 2.2568 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6054 -0.2616 -2.1371 31 1 3.1263 -0.6443 -1.2952 32 1 0.9941 -3.5009 -5.4288 33 1 3.1163 -2.4695 0.3084 34 1 1.0748 -6.3214 2.2008 35 1 2.9183 -6.6886 4.0880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260271443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:38 Heat of formation + Delta-G solvation = -12.212267 kcal Electronic energy + Delta-G solvation = -18890.537818 eV Core-core repulsion = 15890.727761 eV Total energy + Delta-G solvation = -2999.810057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.08733 -40.70019 -38.19122 -35.36230 -35.00669 -34.35701 -32.78698 -30.86624 -28.06179 -27.04980 -25.99688 -23.91315 -22.86473 -21.51504 -20.73281 -19.58302 -19.08834 -18.74893 -17.84845 -17.17212 -16.33262 -15.89703 -15.59047 -15.42233 -15.10532 -14.83401 -14.58992 -14.21901 -13.83201 -13.28397 -13.17162 -13.14388 -12.88581 -12.69059 -12.48843 -12.01617 -11.86016 -11.61284 -11.50206 -11.45834 -11.37805 -11.18464 -10.76900 -10.68780 -9.84052 -8.37929 -6.42586 0.18032 0.84625 1.24893 1.31218 1.39460 2.02997 2.23614 2.27200 2.42978 2.92605 3.07410 3.80111 3.98302 4.04402 4.08900 4.10382 4.31494 4.53697 4.66801 4.72405 4.77619 4.83174 4.93991 4.99500 5.01676 5.08818 5.14839 5.34400 5.44079 5.47220 5.51898 5.63301 6.18044 6.51836 6.62761 7.10987 7.19226 7.28724 8.78977 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.007753 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.990894 B = 3610.629530 C = 4462.238229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.139 4.139 4 C -0.115 4.115 5 C 0.238 3.762 6 H 0.047 0.953 7 C -0.528 4.528 8 H 0.029 0.971 9 C 0.022 3.978 10 N -0.943 5.943 11 Si 0.927 3.073 12 H -0.245 1.245 13 H -0.289 1.289 14 H -0.248 1.248 15 N -0.686 5.686 16 C 0.581 3.419 17 O -0.569 6.569 18 C -0.055 4.055 19 C -0.209 4.209 20 C -0.022 4.022 21 O 0.133 5.867 22 N -0.351 5.351 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.267 0.733 33 H 0.403 0.597 34 H 0.186 0.814 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 2.598 18.397 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.196 4.196 4 C -0.154 4.154 5 C 0.135 3.865 6 H 0.065 0.935 7 C -0.567 4.567 8 H 0.048 0.952 9 C -0.177 4.177 10 N -0.583 5.583 11 Si 0.750 3.250 12 H -0.169 1.169 13 H -0.215 1.215 14 H -0.172 1.172 15 N -0.335 5.335 16 C 0.366 3.634 17 O -0.448 6.448 18 C -0.213 4.213 19 C -0.232 4.232 20 C -0.103 4.103 21 O 0.054 5.946 22 N -0.050 5.050 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.238 0.762 34 H 0.203 0.797 35 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 1.478 3.324 17.570 17.943 hybrid contribution -0.904 -0.564 -0.847 1.361 sum 0.574 2.760 16.724 16.960 Atomic orbital electron populations 1.21945 0.96005 1.00690 1.02211 1.21193 0.95603 0.97305 0.97550 1.21789 1.01285 0.94308 1.02215 1.22068 1.01397 0.94004 0.97900 1.19181 0.94265 0.90449 0.82633 0.93540 1.21480 1.05198 1.33670 0.96308 0.95231 1.25756 1.00919 0.96036 0.94981 1.70050 1.40535 1.42561 1.05133 0.86109 0.79606 0.80204 0.79043 1.16929 1.21524 1.17222 1.45983 1.27162 1.28024 1.32315 1.17367 0.84006 0.80604 0.81447 1.90726 1.25361 1.64329 1.64363 1.23674 0.95762 1.00574 1.01271 1.23057 1.04779 0.97932 0.97440 1.26969 0.87295 0.94551 1.01452 1.84743 1.42948 1.30617 1.36255 1.74161 1.14768 1.15484 1.00604 0.95012 0.90674 0.92943 0.91401 0.91240 0.92038 0.92768 0.92222 0.91376 0.92379 0.76232 0.79669 0.69991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 8.95 71.98 0.64 -4.18 16 2 C -0.10 -3.08 2.86 -10.79 -0.03 -3.11 16 3 C -0.14 -3.40 9.19 71.98 0.66 -2.74 16 4 C -0.12 -4.55 3.99 30.59 0.12 -4.43 16 5 C 0.24 11.48 1.38 44.24 0.06 11.54 16 6 H 0.05 2.43 3.42 -2.39 -0.01 2.43 16 7 C -0.53 -31.40 9.16 25.60 0.23 -31.17 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 9 C 0.02 1.32 5.47 84.65 0.46 1.78 16 10 N -0.94 -61.02 13.96 21.45 0.30 -60.72 16 11 Si 0.93 45.76 25.89 68.60 1.78 47.53 16 12 H -0.25 -10.94 7.11 99.48 0.71 -10.23 16 13 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 14 H -0.25 -11.88 6.14 99.48 0.61 -11.27 16 15 N -0.69 -29.86 4.38 -448.53 -1.96 -31.82 16 16 C 0.58 26.06 7.81 86.93 0.68 26.74 16 17 O -0.57 -30.09 16.61 -3.69 -0.06 -30.15 16 18 C -0.06 -1.92 7.19 42.96 0.31 -1.61 16 19 C -0.21 -5.26 10.99 22.60 0.25 -5.01 16 20 C -0.02 -0.34 12.28 67.14 0.82 0.49 16 21 O 0.13 2.90 11.18 71.83 0.80 3.70 16 22 N -0.35 -10.66 11.84 -49.51 -0.59 -11.24 16 23 H 0.03 1.18 6.49 -2.39 -0.02 1.17 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 2.09 7.55 -2.39 -0.02 2.07 16 27 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 2.46 6.38 -2.38 -0.02 2.45 16 31 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.27 16.15 8.31 -92.70 -0.77 15.38 16 33 H 0.40 15.32 8.34 -92.71 -0.77 14.55 16 34 H 0.19 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.28 0.37 8.06 -2.91 -0.02 0.35 16 Total: -1.00 -79.41 297.00 4.72 -74.69 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.24 Total: 19.73 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 4.22 Total: -11.71 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -2.25 Total: -103.78 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.78 Total: 47.53 kcal Total: -79.41 4.72 -74.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260271443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.473 kcal (2) G-P(sol) polarization free energy of solvation -79.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds