Wall clock time and date at job start Mon Mar 30 2020 03:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41377 * 126.80113 * 2 1 4 4 C 1.35455 * 103.98513 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.77379 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.47043 * 90.00391 * 5 4 3 7 7 C 1.47012 * 110.99708 * 46.35979 * 6 5 4 8 8 C 1.53101 * 109.25518 * 182.39141 * 7 6 5 9 9 O 1.43016 * 109.26183 * 303.15238 * 8 7 6 10 10 C 1.43016 * 113.73536 * 58.67005 * 9 8 7 11 11 C 1.47007 * 110.99918 * 169.99781 * 6 5 4 12 12 H 1.09000 * 109.51104 * 297.53710 * 11 6 5 13 13 C 1.50698 * 109.51268 * 57.63253 * 11 6 5 14 14 H 1.08005 * 119.99468 * 359.97438 * 13 11 6 15 15 C 1.37870 * 120.00672 * 180.02562 * 13 11 6 16 16 N 1.31516 * 119.99891 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00491 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47102 * 59.99572 * 17 15 13 19 19 H 1.48499 * 109.47490 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.46738 * 299.99965 * 17 15 13 21 21 O 1.34038 * 106.44434 * 0.02562 * 4 3 2 22 22 N 1.20920 * 111.56958 * 359.70525 * 21 4 3 23 23 H 1.09001 * 109.46953 * 89.99949 * 1 2 3 24 24 H 1.09000 * 109.47318 * 209.99547 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.00177 * 1 2 3 26 26 H 1.08005 * 128.00705 * 359.96469 * 3 2 1 27 27 H 1.08997 * 109.46823 * 209.99841 * 5 4 3 28 28 H 1.08994 * 109.47735 * 330.00548 * 5 4 3 29 29 H 1.08994 * 109.51234 * 302.32629 * 7 6 5 30 30 H 1.08999 * 109.50690 * 62.46231 * 7 6 5 31 31 H 1.09002 * 109.50477 * 183.22051 * 8 7 6 32 32 H 1.08997 * 109.54027 * 63.11337 * 8 7 6 33 33 H 1.08998 * 109.50513 * 181.39709 * 10 9 8 34 34 H 1.08998 * 109.50569 * 61.26835 * 10 9 8 35 35 H 0.97002 * 120.00383 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6068 0.0006 5 6 4.9022 1.3696 0.0003 6 7 5.3243 1.6183 1.3853 7 6 5.2082 0.3990 2.1984 8 6 5.5999 0.7169 3.6439 9 8 6.9235 1.2584 3.6658 10 6 7.0722 2.4470 2.8845 11 6 6.6953 2.1467 1.4313 12 1 7.3842 1.4077 1.0221 13 6 6.7744 3.4129 0.6181 14 1 5.8946 3.7883 0.1165 15 6 7.9698 4.0918 0.5136 16 7 9.0412 3.6345 1.1241 17 14 8.0679 5.6610 -0.4950 18 1 7.1310 6.6683 0.0644 19 1 9.4531 6.1941 -0.4478 20 1 7.6972 5.3683 -1.9030 21 8 3.4538 -0.7253 0.0003 22 7 2.2869 -1.0423 0.0054 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 2.0709 2.1743 -0.0005 27 1 5.6661 0.7856 -0.5130 28 1 4.7652 2.3207 -0.5141 29 1 4.1796 0.0396 2.1708 30 1 5.8732 -0.3679 1.8014 31 1 5.5705 -0.1963 4.2382 32 1 4.9023 1.4441 4.0592 33 1 8.1075 2.7850 2.9297 34 1 6.4173 3.2249 3.2771 35 1 9.8822 4.1122 1.0509 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260294289.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:21 Heat of formation + Delta-G solvation = 22.551204 kcal Electronic energy + Delta-G solvation = -19092.041921 eV Core-core repulsion = 16093.739321 eV Total energy + Delta-G solvation = -2998.302600 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.67937 -38.68467 -35.38784 -34.57829 -33.28740 -31.62236 -29.93961 -28.59676 -27.56418 -25.43002 -23.77166 -22.79190 -22.30689 -19.80110 -19.30116 -17.50067 -16.93704 -16.57249 -15.53356 -15.22463 -14.71723 -14.36647 -14.15261 -13.66729 -13.42556 -13.37908 -13.21001 -12.97195 -12.90952 -12.20188 -12.05480 -11.72335 -11.07054 -10.95889 -10.85944 -10.75863 -10.41133 -10.30307 -9.88576 -9.80447 -9.33754 -9.07412 -8.75547 -8.46163 -7.46290 -6.20398 -4.26348 1.69643 2.42839 3.23149 3.29152 3.30530 3.36090 4.26395 4.33648 4.64459 4.72257 4.88087 5.14254 5.28063 5.37992 5.41946 5.50219 5.62703 5.75342 5.77466 5.85485 5.88778 6.14763 6.20149 6.22956 6.32551 6.40680 6.60661 6.77334 7.14209 7.36438 7.57631 7.71460 8.02476 8.05481 8.39438 8.48220 8.79066 9.39942 10.87438 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023419 B = 0.006742 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.311229 B = 4151.814326 C = 5012.153217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.010 3.990 3 C -0.226 4.226 4 C -0.007 4.007 5 C 0.142 3.858 6 N -0.526 5.526 7 C 0.017 3.983 8 C 0.070 3.930 9 O -0.402 6.402 10 C 0.070 3.930 11 C 0.189 3.811 12 H 0.014 0.986 13 C -0.516 4.516 14 H 0.067 0.933 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.902 3.098 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.276 1.276 21 O 0.089 5.911 22 N -0.376 5.376 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.170 0.830 27 H 0.053 0.947 28 H 0.116 0.884 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.125 0.875 34 H 0.035 0.965 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 -3.804 -0.906 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.149 4.149 3 C -0.249 4.249 4 C -0.070 4.070 5 C 0.014 3.986 6 N -0.253 5.253 7 C -0.112 4.112 8 C -0.008 4.008 9 O -0.322 6.322 10 C -0.007 4.007 11 C 0.083 3.917 12 H 0.031 0.969 13 C -0.554 4.554 14 H 0.085 0.915 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.730 3.270 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 O 0.025 5.975 22 N -0.083 5.083 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.188 0.812 27 H 0.071 0.929 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.143 0.857 34 H 0.054 0.946 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.402 -4.805 -0.568 12.386 hybrid contribution 0.295 1.216 -1.047 1.631 sum -11.107 -3.589 -1.615 11.784 Atomic orbital electron populations 1.20110 0.86323 1.03477 1.03000 1.23575 0.98788 0.89230 1.03308 1.22382 0.91036 1.00975 1.10496 1.24876 0.99236 0.82927 1.00008 1.20632 0.87275 0.97788 0.92890 1.62568 1.28870 1.26362 1.07482 1.22756 0.99987 0.92589 0.95821 1.22411 0.85939 0.97918 0.94555 1.87923 1.28006 1.44739 1.71483 1.23141 1.03913 0.83820 0.89777 1.19949 0.81639 0.95577 0.94526 0.96853 1.20983 0.95753 1.07880 1.30816 0.91488 1.24978 0.95432 0.97933 0.95614 1.69828 1.00587 1.39649 1.42764 0.86487 0.77198 0.82919 0.80442 1.20054 1.21172 1.20151 1.84820 1.21396 1.23509 1.67790 1.73798 0.89537 1.24380 1.20585 0.90492 0.90897 0.90158 0.81224 0.92860 0.86661 0.91820 0.94623 0.90168 0.93477 0.85749 0.94643 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.48 36.01 0.38 -0.33 16 2 C 0.01 0.14 7.33 -82.10 -0.60 -0.46 16 3 C -0.23 -3.34 11.06 -39.38 -0.44 -3.78 16 4 C -0.01 -0.11 5.18 -35.30 -0.18 -0.30 16 5 C 0.14 2.62 5.29 -4.97 -0.03 2.59 16 6 N -0.53 -10.88 4.67 -229.17 -1.07 -11.95 16 7 C 0.02 0.33 5.11 -3.71 -0.02 0.31 16 8 C 0.07 1.30 7.01 37.21 0.26 1.56 16 9 O -0.40 -9.08 10.83 -35.23 -0.38 -9.46 16 10 C 0.07 1.68 6.02 37.21 0.22 1.90 16 11 C 0.19 4.57 1.93 -68.75 -0.13 4.44 16 12 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 13 C -0.52 -13.06 8.03 -34.44 -0.28 -13.33 16 14 H 0.07 1.65 6.56 -52.48 -0.34 1.30 16 15 C 0.06 1.63 5.31 -17.82 -0.09 1.53 16 16 N -0.89 -24.01 11.37 55.43 0.63 -23.38 16 17 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 O 0.09 1.53 10.54 17.18 0.18 1.71 16 22 N -0.38 -6.24 12.07 33.42 0.40 -5.84 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.17 2.16 8.06 -52.48 -0.42 1.74 16 27 H 0.05 1.00 8.08 -51.93 -0.42 0.59 16 28 H 0.12 2.09 6.72 -51.93 -0.35 1.74 16 29 H 0.06 1.14 6.29 -51.93 -0.33 0.81 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.12 3.27 6.19 -51.93 -0.32 2.95 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 288.40 15.07 4.35 4.35 Total: -1.00 -27.84 288.40 -6.52 -34.36 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.70 Total: 1.09 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.91 Total: -5.87 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.04 Total: -41.17 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.20 Total: -7.74 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.84 -6.52 -34.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260294289.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.912 kcal (2) G-P(sol) polarization free energy of solvation -27.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds