Wall clock time and date at job start Mon Mar 30 2020 03:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41377 * 126.80113 * 2 1 4 4 C 1.35455 * 103.98513 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.77379 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.47043 * 90.00391 * 5 4 3 7 7 C 1.47012 * 110.99708 * 46.35979 * 6 5 4 8 8 C 1.53101 * 109.25518 * 182.39141 * 7 6 5 9 9 O 1.43016 * 109.26183 * 303.15238 * 8 7 6 10 10 C 1.43016 * 113.73536 * 58.67005 * 9 8 7 11 11 C 1.47007 * 110.99918 * 169.99781 * 6 5 4 12 12 H 1.09000 * 109.51104 * 297.53710 * 11 6 5 13 13 C 1.50698 * 109.51268 * 57.63253 * 11 6 5 14 14 H 1.08005 * 119.99468 * 359.97438 * 13 11 6 15 15 C 1.37870 * 120.00672 * 180.02562 * 13 11 6 16 16 N 1.31516 * 119.99891 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00491 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47102 * 59.99572 * 17 15 13 19 19 H 1.48499 * 109.47490 * 179.97438 * 17 15 13 20 20 H 1.48509 * 109.46738 * 299.99965 * 17 15 13 21 21 O 1.34038 * 106.44434 * 0.02562 * 4 3 2 22 22 N 1.20920 * 111.56958 * 359.70525 * 21 4 3 23 23 H 1.09001 * 109.46953 * 89.99949 * 1 2 3 24 24 H 1.09000 * 109.47318 * 209.99547 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.00177 * 1 2 3 26 26 H 1.08005 * 128.00705 * 359.96469 * 3 2 1 27 27 H 1.08997 * 109.46823 * 209.99841 * 5 4 3 28 28 H 1.08994 * 109.47735 * 330.00548 * 5 4 3 29 29 H 1.08994 * 109.51234 * 302.32629 * 7 6 5 30 30 H 1.08999 * 109.50690 * 62.46231 * 7 6 5 31 31 H 1.09002 * 109.50477 * 183.22051 * 8 7 6 32 32 H 1.08997 * 109.54027 * 63.11337 * 8 7 6 33 33 H 1.08998 * 109.50513 * 181.39709 * 10 9 8 34 34 H 1.08998 * 109.50569 * 61.26835 * 10 9 8 35 35 H 0.97002 * 120.00383 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6068 0.0006 5 6 4.9022 1.3696 0.0003 6 7 5.3243 1.6183 1.3853 7 6 5.2082 0.3990 2.1984 8 6 5.5999 0.7169 3.6439 9 8 6.9235 1.2584 3.6658 10 6 7.0722 2.4470 2.8845 11 6 6.6953 2.1467 1.4313 12 1 7.3842 1.4077 1.0221 13 6 6.7744 3.4129 0.6181 14 1 5.8946 3.7883 0.1165 15 6 7.9698 4.0918 0.5136 16 7 9.0412 3.6345 1.1241 17 14 8.0679 5.6610 -0.4950 18 1 7.1310 6.6683 0.0644 19 1 9.4531 6.1941 -0.4478 20 1 7.6972 5.3683 -1.9030 21 8 3.4538 -0.7253 0.0003 22 7 2.2869 -1.0423 0.0054 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 2.0709 2.1743 -0.0005 27 1 5.6661 0.7856 -0.5130 28 1 4.7652 2.3207 -0.5141 29 1 4.1796 0.0396 2.1708 30 1 5.8732 -0.3679 1.8014 31 1 5.5705 -0.1963 4.2382 32 1 4.9023 1.4441 4.0592 33 1 8.1075 2.7850 2.9297 34 1 6.4173 3.2249 3.2771 35 1 9.8822 4.1122 1.0509 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260294289.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:20 Heat of formation + Delta-G solvation = 3.875431 kcal Electronic energy + Delta-G solvation = -19092.851763 eV Core-core repulsion = 16093.739321 eV Total energy + Delta-G solvation = -2999.112442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.88536 -40.40335 -37.04294 -35.69420 -35.16691 -33.02787 -31.71153 -29.53077 -29.13396 -27.30129 -25.37150 -24.21724 -23.83768 -21.21393 -20.85299 -18.89928 -18.46988 -18.09176 -17.29057 -16.87568 -16.37288 -15.89326 -15.76037 -15.39110 -14.88098 -14.80104 -14.30502 -14.13667 -13.96201 -13.87886 -13.38325 -13.13816 -12.82563 -12.69327 -12.50987 -12.26551 -12.08610 -11.99686 -11.62082 -11.10243 -10.94031 -10.71059 -10.43196 -10.26850 -9.19373 -8.17179 -6.30082 0.43033 1.30113 1.48075 1.49220 1.56936 2.07267 2.41705 3.04744 3.11234 3.29589 3.32248 3.48460 4.05006 4.06409 4.23943 4.26706 4.35112 4.41431 4.58952 4.64237 4.68362 4.73374 4.77890 4.84715 4.91335 4.95670 5.00062 5.24596 5.30045 5.46199 5.64043 5.88864 6.13319 6.31289 6.54886 6.82059 7.26287 7.40138 8.90398 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023419 B = 0.006742 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.311229 B = 4151.814326 C = 5012.153217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.018 3.982 3 C -0.215 4.215 4 C -0.023 4.023 5 C 0.148 3.852 6 N -0.527 5.527 7 C 0.022 3.978 8 C 0.064 3.936 9 O -0.417 6.417 10 C 0.081 3.919 11 C 0.197 3.803 12 H -0.027 1.027 13 C -0.526 4.526 14 H 0.074 0.926 15 C 0.016 3.984 16 N -0.921 5.921 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.269 1.269 21 O 0.067 5.933 22 N -0.397 5.397 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.193 0.807 27 H 0.039 0.961 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.023 0.977 31 H 0.114 0.886 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.033 0.967 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.695 -3.185 -1.172 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.141 4.141 3 C -0.237 4.237 4 C -0.086 4.086 5 C 0.020 3.980 6 N -0.253 5.253 7 C -0.106 4.106 8 C -0.013 4.013 9 O -0.337 6.337 10 C 0.004 3.996 11 C 0.090 3.910 12 H -0.010 1.010 13 C -0.564 4.564 14 H 0.092 0.908 15 C -0.183 4.183 16 N -0.560 5.560 17 Si 0.791 3.209 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.194 1.194 21 O 0.006 5.994 22 N -0.108 5.108 23 H 0.113 0.887 24 H 0.097 0.903 25 H 0.121 0.879 26 H 0.210 0.790 27 H 0.057 0.943 28 H 0.135 0.865 29 H 0.098 0.902 30 H 0.041 0.959 31 H 0.132 0.868 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.052 0.948 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.842 -4.195 -0.834 14.487 hybrid contribution 0.956 0.941 -0.952 1.645 sum -12.885 -3.253 -1.786 13.409 Atomic orbital electron populations 1.20335 0.83110 1.04903 1.04595 1.24269 1.00666 0.88224 1.00925 1.22735 0.90168 1.02204 1.08616 1.24569 0.98970 0.83108 1.01954 1.20474 0.88065 0.98048 0.91453 1.62518 1.26313 1.27390 1.09096 1.22754 1.00594 0.91577 0.95696 1.22719 0.84270 0.99432 0.94875 1.87884 1.30541 1.44116 1.71128 1.22795 1.02256 0.84465 0.90052 1.19691 0.82710 0.94462 0.94165 1.00972 1.21263 0.96065 1.08161 1.30867 0.90813 1.25777 0.95086 1.00897 0.96580 1.69974 1.01040 1.40951 1.44013 0.85476 0.77019 0.79211 0.79159 1.19301 1.21359 1.19380 1.84802 1.22061 1.23664 1.68828 1.73812 0.89529 1.25458 1.21968 0.88686 0.90312 0.87913 0.79008 0.94255 0.86457 0.90163 0.95853 0.86814 0.92433 0.88426 0.94825 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.48 71.24 0.75 -0.41 16 2 C 0.02 0.47 7.33 43.58 0.32 0.79 16 3 C -0.22 -5.80 11.06 22.40 0.25 -5.55 16 4 C -0.02 -0.73 5.18 25.04 0.13 -0.60 16 5 C 0.15 5.43 5.29 85.55 0.45 5.89 16 6 N -0.53 -21.78 4.67 -878.95 -4.11 -25.89 16 7 C 0.02 0.84 5.11 86.32 0.44 1.28 16 8 C 0.06 2.31 7.01 72.02 0.50 2.81 16 9 O -0.42 -18.91 10.83 -148.98 -1.61 -20.52 16 10 C 0.08 4.00 6.02 72.02 0.43 4.43 16 11 C 0.20 9.74 1.93 44.18 0.09 9.83 16 12 H -0.03 -1.54 8.14 -2.39 -0.02 -1.56 16 13 C -0.53 -26.82 8.03 25.60 0.21 -26.61 16 14 H 0.07 3.58 6.56 -2.91 -0.02 3.57 16 15 C 0.02 0.85 5.31 84.65 0.45 1.30 16 16 N -0.92 -50.90 11.37 21.44 0.24 -50.65 16 17 Si 0.97 40.89 29.54 68.60 2.03 42.91 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 19 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 O 0.07 2.27 10.54 71.66 0.76 3.03 16 22 N -0.40 -12.58 12.07 -49.56 -0.60 -13.17 16 23 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.19 4.21 8.06 -2.91 -0.02 4.18 16 27 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 28 H 0.12 4.21 6.72 -2.39 -0.02 4.19 16 29 H 0.08 2.76 6.29 -2.39 -0.02 2.75 16 30 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.10 5.35 6.19 -2.39 -0.01 5.33 16 34 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -60.32 288.40 1.81 -58.51 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.09 Total: 12.63 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 4.01 Total: -6.85 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -4.46 Total: -89.72 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.86 Total: -17.50 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Total: -60.32 1.81 -58.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260294289.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.388 kcal (2) G-P(sol) polarization free energy of solvation -60.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds