Wall clock time and date at job start Mon Mar 30 2020 04:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35452 * 128.00543 * 2 1 4 4 O 1.34038 * 106.44351 * 180.23605 * 3 2 1 5 5 N 1.20917 * 111.57226 * 359.74749 * 4 3 2 6 6 C 1.30179 * 111.60076 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.80057 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.46909 * 90.02975 * 7 6 5 9 9 C 1.47018 * 110.99949 * 293.62939 * 8 7 6 10 10 C 1.53091 * 109.26046 * 177.61119 * 9 8 7 11 11 O 1.43015 * 109.26132 * 56.85088 * 10 9 8 12 12 C 1.43019 * 113.73789 * 301.33167 * 11 10 9 13 13 C 1.47015 * 111.00025 * 170.00249 * 8 7 6 14 14 H 1.09002 * 109.50921 * 62.45295 * 13 8 7 15 15 C 1.50705 * 109.54016 * 302.34195 * 13 8 7 16 16 H 1.07996 * 119.99492 * 0.11326 * 15 13 8 17 17 C 1.37875 * 120.00165 * 180.10685 * 15 13 8 18 18 N 1.31520 * 119.99873 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00002 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47040 * 90.00544 * 19 17 15 21 21 H 1.48507 * 109.46777 * 210.00147 * 19 17 15 22 22 H 1.48499 * 109.47130 * 330.00085 * 19 17 15 23 23 H 1.09000 * 109.46860 * 270.16442 * 1 2 3 24 24 H 1.09003 * 109.47500 * 30.16528 * 1 2 3 25 25 H 1.08998 * 109.47093 * 150.16667 * 1 2 3 26 26 H 1.08001 * 126.77587 * 359.96001 * 3 2 1 27 27 H 1.08992 * 109.47108 * 330.02741 * 7 6 5 28 28 H 1.09001 * 109.46892 * 210.02376 * 7 6 5 29 29 H 1.09008 * 109.50418 * 57.67149 * 9 8 7 30 30 H 1.09004 * 109.54409 * 297.57420 * 9 8 7 31 31 H 1.09004 * 109.50597 * 296.91615 * 10 9 8 32 32 H 1.09002 * 109.50802 * 176.78885 * 10 9 8 33 33 H 1.09005 * 109.50538 * 298.73550 * 12 11 10 34 34 H 1.08997 * 109.54429 * 178.62382 * 12 11 10 35 35 H 0.96994 * 120.00041 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5876 0.5747 -0.0053 5 7 3.5879 -0.6345 -0.0034 6 6 2.3776 -1.1139 0.0027 7 6 1.9828 -2.5683 0.0062 8 7 1.8602 -3.0390 1.3923 9 6 3.1663 -3.0365 2.0670 10 6 2.9839 -3.4757 3.5222 11 8 2.3617 -4.7630 3.5520 12 6 1.0872 -4.8016 2.9042 13 6 1.2505 -4.3759 1.4427 14 1 1.8929 -5.0886 0.9256 15 6 -0.1002 -4.3394 0.7753 16 1 -0.4693 -3.4162 0.3535 17 6 -0.8646 -5.4845 0.7031 18 7 -0.4153 -6.6086 1.2171 19 14 -2.5385 -5.4394 -0.1248 20 1 -2.3849 -5.7490 -1.5690 21 1 -3.4296 -6.4466 0.5053 22 1 -3.1317 -4.0870 0.0313 23 1 -0.3633 0.0029 1.0277 24 1 -0.3634 0.8885 -0.5164 25 1 -0.3633 -0.8915 -0.5112 26 1 2.0576 2.1094 -0.0006 27 1 2.7443 -3.1527 -0.5100 28 1 1.0265 -2.6863 -0.5035 29 1 3.5880 -2.0316 2.0402 30 1 3.8400 -3.7274 1.5600 31 1 2.3540 -2.7549 4.0437 32 1 3.9568 -3.5302 4.0107 33 1 0.4022 -4.1193 3.4077 34 1 0.6876 -5.8149 2.9457 35 1 -0.9532 -7.4142 1.1666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260308319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:22 Heat of formation + Delta-G solvation = 22.954222 kcal Electronic energy + Delta-G solvation = -19333.757421 eV Core-core repulsion = 16335.472298 eV Total energy + Delta-G solvation = -2998.285123 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.63250 -38.62750 -35.68321 -34.07021 -33.07305 -31.77824 -29.88195 -28.15112 -27.63136 -25.47698 -23.93114 -22.32343 -21.26353 -20.65241 -19.27329 -17.35387 -17.14780 -16.57727 -15.54605 -15.13616 -14.73463 -14.55631 -13.98811 -13.66890 -13.39730 -13.16294 -13.05389 -12.89200 -12.35814 -12.11367 -11.75270 -11.61829 -11.06162 -10.91720 -10.73298 -10.69549 -10.37342 -10.23222 -9.80699 -9.66280 -9.13369 -9.09740 -8.73178 -8.43151 -7.39033 -6.18277 -4.23504 1.75288 2.52814 3.21949 3.29577 3.31692 3.52815 4.27624 4.49941 4.81608 4.87223 4.97381 5.15973 5.17497 5.46911 5.68618 5.75345 5.84088 5.85413 5.93480 5.98786 6.10437 6.22366 6.30047 6.33014 6.46295 6.57354 6.65752 6.84414 7.21527 7.43551 7.61506 7.78521 8.08541 8.12211 8.44683 8.58767 8.82365 9.42088 10.89701 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.008399 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.511778 B = 3333.065480 C = 4424.897174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.178 4.178 3 C -0.085 4.085 4 O 0.090 5.910 5 N -0.370 5.370 6 C 0.040 3.960 7 C 0.136 3.864 8 N -0.524 5.524 9 C 0.019 3.981 10 C 0.070 3.930 11 O -0.403 6.403 12 C 0.070 3.930 13 C 0.189 3.811 14 H 0.011 0.989 15 C -0.512 4.512 16 H 0.068 0.932 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.272 1.272 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.210 0.790 27 H 0.039 0.961 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.124 0.876 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.310 12.060 -1.187 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.182 4.182 3 C -0.166 4.166 4 O 0.026 5.974 5 N -0.076 5.076 6 C -0.119 4.119 7 C 0.007 3.993 8 N -0.251 5.251 9 C -0.110 4.110 10 C -0.008 4.008 11 O -0.322 6.322 12 C -0.006 4.006 13 C 0.083 3.917 14 H 0.028 0.972 15 C -0.550 4.550 16 H 0.086 0.914 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.728 3.272 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.226 0.774 27 H 0.057 0.943 28 H 0.129 0.871 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.142 0.858 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.243 11.460 -0.830 11.939 hybrid contribution -1.276 -0.079 -0.987 1.615 sum 1.967 11.381 -1.817 11.692 Atomic orbital electron populations 1.20084 0.87392 1.02705 1.03055 1.21345 0.98803 0.91478 1.06582 1.25630 0.83562 1.00813 1.06629 1.84768 1.29015 1.15818 1.67831 1.73834 1.22820 0.91056 1.19907 1.23753 0.87877 0.99263 1.01009 1.20358 1.02002 0.84899 0.92022 1.62246 1.20017 1.29645 1.13195 1.22725 0.91831 1.00178 0.96251 1.22412 0.97161 0.86543 0.94690 1.87912 1.36278 1.29489 1.78571 1.23128 0.81544 1.04013 0.91915 1.19883 0.94876 0.82708 0.94239 0.97180 1.21027 1.01101 0.95799 1.37102 0.91401 1.24989 0.98480 0.95246 0.95362 1.69842 1.37939 1.00191 1.44911 0.86454 0.83339 0.78034 0.79406 1.20618 1.21071 1.19658 0.90535 0.91850 0.90458 0.77352 0.94308 0.87080 0.91476 0.95115 0.93624 0.90273 0.94754 0.85806 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.37 36.01 0.37 -0.60 16 2 C -0.18 -2.65 6.32 -104.42 -0.66 -3.31 16 3 C -0.09 -1.04 12.26 29.74 0.36 -0.68 16 4 O 0.09 1.35 11.20 17.18 0.19 1.55 16 5 N -0.37 -6.55 11.32 33.42 0.38 -6.17 16 6 C 0.04 0.72 5.96 -82.10 -0.49 0.23 16 7 C 0.14 2.73 5.27 -4.98 -0.03 2.71 16 8 N -0.52 -11.47 4.52 -229.15 -1.04 -12.51 16 9 C 0.02 0.39 5.47 -3.71 -0.02 0.37 16 10 C 0.07 1.37 7.01 37.20 0.26 1.63 16 11 O -0.40 -9.40 10.83 -35.23 -0.38 -9.78 16 12 C 0.07 1.74 6.02 37.21 0.22 1.97 16 13 C 0.19 4.73 1.97 -68.75 -0.14 4.59 16 14 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 15 C -0.51 -13.19 7.81 -34.44 -0.27 -13.46 16 16 H 0.07 1.70 6.57 -52.49 -0.34 1.35 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -24.39 11.36 55.43 0.63 -23.76 16 19 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.10 7.65 -51.93 -0.40 0.70 16 26 H 0.21 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 28 H 0.11 2.28 5.56 -51.93 -0.29 1.99 16 29 H 0.07 1.30 6.66 -51.92 -0.35 0.95 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.12 3.33 6.17 -51.93 -0.32 3.01 16 35 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 287.94 15.07 4.34 4.34 Total: -1.00 -28.89 287.94 -6.01 -34.90 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.64 Total: 1.35 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.47 Total: -5.04 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -0.03 Total: -42.44 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.19 Total: -8.24 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.89 -6.01 -34.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.850 kcal (2) G-P(sol) polarization free energy of solvation -28.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds