Wall clock time and date at job start Mon Mar 30 2020 04:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35452 * 128.00543 * 2 1 4 4 O 1.34038 * 106.44351 * 180.23605 * 3 2 1 5 5 N 1.20917 * 111.57226 * 359.74749 * 4 3 2 6 6 C 1.30179 * 111.60076 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.80057 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.46909 * 90.02975 * 7 6 5 9 9 C 1.47018 * 110.99949 * 293.62939 * 8 7 6 10 10 C 1.53091 * 109.26046 * 177.61119 * 9 8 7 11 11 O 1.43015 * 109.26132 * 56.85088 * 10 9 8 12 12 C 1.43019 * 113.73789 * 301.33167 * 11 10 9 13 13 C 1.47015 * 111.00025 * 170.00249 * 8 7 6 14 14 H 1.09002 * 109.50921 * 62.45295 * 13 8 7 15 15 C 1.50705 * 109.54016 * 302.34195 * 13 8 7 16 16 H 1.07996 * 119.99492 * 0.11326 * 15 13 8 17 17 C 1.37875 * 120.00165 * 180.10685 * 15 13 8 18 18 N 1.31520 * 119.99873 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00002 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47040 * 90.00544 * 19 17 15 21 21 H 1.48507 * 109.46777 * 210.00147 * 19 17 15 22 22 H 1.48499 * 109.47130 * 330.00085 * 19 17 15 23 23 H 1.09000 * 109.46860 * 270.16442 * 1 2 3 24 24 H 1.09003 * 109.47500 * 30.16528 * 1 2 3 25 25 H 1.08998 * 109.47093 * 150.16667 * 1 2 3 26 26 H 1.08001 * 126.77587 * 359.96001 * 3 2 1 27 27 H 1.08992 * 109.47108 * 330.02741 * 7 6 5 28 28 H 1.09001 * 109.46892 * 210.02376 * 7 6 5 29 29 H 1.09008 * 109.50418 * 57.67149 * 9 8 7 30 30 H 1.09004 * 109.54409 * 297.57420 * 9 8 7 31 31 H 1.09004 * 109.50597 * 296.91615 * 10 9 8 32 32 H 1.09002 * 109.50802 * 176.78885 * 10 9 8 33 33 H 1.09005 * 109.50538 * 298.73550 * 12 11 10 34 34 H 1.08997 * 109.54429 * 178.62382 * 12 11 10 35 35 H 0.96994 * 120.00041 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5876 0.5747 -0.0053 5 7 3.5879 -0.6345 -0.0034 6 6 2.3776 -1.1139 0.0027 7 6 1.9828 -2.5683 0.0062 8 7 1.8602 -3.0390 1.3923 9 6 3.1663 -3.0365 2.0670 10 6 2.9839 -3.4757 3.5222 11 8 2.3617 -4.7630 3.5520 12 6 1.0872 -4.8016 2.9042 13 6 1.2505 -4.3759 1.4427 14 1 1.8929 -5.0886 0.9256 15 6 -0.1002 -4.3394 0.7753 16 1 -0.4693 -3.4162 0.3535 17 6 -0.8646 -5.4845 0.7031 18 7 -0.4153 -6.6086 1.2171 19 14 -2.5385 -5.4394 -0.1248 20 1 -2.3849 -5.7490 -1.5690 21 1 -3.4296 -6.4466 0.5053 22 1 -3.1317 -4.0870 0.0313 23 1 -0.3633 0.0029 1.0277 24 1 -0.3634 0.8885 -0.5164 25 1 -0.3633 -0.8915 -0.5112 26 1 2.0576 2.1094 -0.0006 27 1 2.7443 -3.1527 -0.5100 28 1 1.0265 -2.6863 -0.5035 29 1 3.5880 -2.0316 2.0402 30 1 3.8400 -3.7274 1.5600 31 1 2.3540 -2.7549 4.0437 32 1 3.9568 -3.5302 4.0107 33 1 0.4022 -4.1193 3.4077 34 1 0.6876 -5.8149 2.9457 35 1 -0.9532 -7.4142 1.1666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260308319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:22 Heat of formation + Delta-G solvation = 2.826152 kcal Electronic energy + Delta-G solvation = -19334.630240 eV Core-core repulsion = 16335.472298 eV Total energy + Delta-G solvation = -2999.157942 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.87293 -40.43225 -37.28702 -35.59242 -34.85455 -33.07913 -31.73402 -29.71641 -28.81992 -27.40544 -25.64560 -24.12951 -22.48447 -21.93747 -21.10517 -18.81203 -18.51683 -18.22902 -17.37120 -16.91362 -16.39227 -16.05705 -15.77167 -15.44730 -14.95427 -14.83755 -14.26393 -14.02203 -13.98378 -13.61067 -13.28835 -13.01095 -12.84651 -12.65935 -12.50592 -12.21194 -12.12553 -11.92763 -11.62374 -11.19083 -10.88112 -10.68094 -10.33693 -10.17120 -9.23352 -8.19428 -6.32164 0.66458 1.26158 1.44503 1.45774 1.56528 2.39443 2.53053 3.00332 3.03594 3.23827 3.39573 3.63729 4.03463 4.09997 4.20922 4.30489 4.33119 4.47727 4.54644 4.62061 4.73164 4.78100 4.82334 4.88597 4.96512 4.99707 5.09185 5.22791 5.42880 5.46415 5.62148 5.87935 6.13627 6.30317 6.52974 6.79963 7.37442 7.42306 8.88640 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.008399 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.511778 B = 3333.065480 C = 4424.897174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.199 4.199 3 C -0.050 4.050 4 O 0.098 5.902 5 N -0.395 5.395 6 C 0.012 3.988 7 C 0.143 3.857 8 N -0.523 5.523 9 C 0.023 3.977 10 C 0.066 3.934 11 O -0.417 6.417 12 C 0.082 3.918 13 C 0.196 3.804 14 H -0.035 1.035 15 C -0.522 4.522 16 H 0.073 0.927 17 C 0.014 3.986 18 N -0.922 5.922 19 Si 0.967 3.033 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.259 1.259 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.055 0.945 26 H 0.266 0.734 27 H 0.019 0.981 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.015 0.985 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.033 0.967 34 H 0.099 0.901 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.695 14.976 -1.270 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.203 4.203 3 C -0.131 4.131 4 O 0.032 5.968 5 N -0.100 5.100 6 C -0.145 4.145 7 C 0.014 3.986 8 N -0.249 5.249 9 C -0.105 4.105 10 C -0.011 4.011 11 O -0.337 6.337 12 C 0.006 3.994 13 C 0.089 3.911 14 H -0.017 1.017 15 C -0.560 4.560 16 H 0.091 0.909 17 C -0.185 4.185 18 N -0.561 5.561 19 Si 0.791 3.209 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.183 1.183 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.075 0.925 26 H 0.282 0.718 27 H 0.037 0.963 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.052 0.948 34 H 0.117 0.883 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.644 14.377 -0.912 14.647 hybrid contribution -0.978 -0.887 -0.965 1.636 sum 1.666 13.490 -1.877 13.722 Atomic orbital electron populations 1.20097 0.86269 1.03509 1.02970 1.21599 0.99756 0.91089 1.07890 1.26542 0.81470 1.02391 1.02715 1.84731 1.30471 1.14703 1.66927 1.73825 1.22946 0.92372 1.20820 1.23511 0.89191 0.98530 1.03302 1.20143 1.00893 0.86816 0.90713 1.62245 1.20901 1.27340 1.14421 1.22736 0.90778 1.00562 0.96464 1.22707 0.98797 0.85104 0.94476 1.87873 1.35606 1.31896 1.78300 1.22786 0.82328 1.02440 0.91891 1.19656 0.94226 0.83357 0.93826 1.01728 1.21263 1.01385 0.96149 1.37179 0.90882 1.25819 1.02110 0.94773 0.95843 1.69984 1.39340 1.00804 1.45970 0.85411 0.78775 0.78467 0.78200 1.20299 1.21001 1.18316 0.91035 0.88163 0.92548 0.71799 0.96281 0.88065 0.89996 0.96683 0.92525 0.86681 0.94824 0.88331 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.37 71.24 0.74 -0.95 16 2 C -0.20 -5.43 6.32 -19.73 -0.12 -5.55 16 3 C -0.05 -1.02 12.26 67.18 0.82 -0.19 16 4 O 0.10 2.66 11.20 71.66 0.80 3.46 16 5 N -0.39 -13.49 11.32 -49.57 -0.56 -14.05 16 6 C 0.01 0.44 5.96 43.58 0.26 0.70 16 7 C 0.14 5.93 5.27 85.56 0.45 6.38 16 8 N -0.52 -23.37 4.52 -878.91 -3.97 -27.34 16 9 C 0.02 0.95 5.47 86.31 0.47 1.42 16 10 C 0.07 2.52 7.01 72.01 0.50 3.03 16 11 O -0.42 -19.66 10.83 -148.98 -1.61 -21.28 16 12 C 0.08 4.21 6.02 72.02 0.43 4.64 16 13 C 0.20 10.22 1.97 44.18 0.09 10.31 16 14 H -0.03 -2.08 8.14 -2.39 -0.02 -2.10 16 15 C -0.52 -27.55 7.81 25.60 0.20 -27.35 16 16 H 0.07 3.70 6.57 -2.91 -0.02 3.69 16 17 C 0.01 0.75 5.30 84.65 0.45 1.19 16 18 N -0.92 -52.06 11.36 21.45 0.24 -51.82 16 19 Si 0.97 41.55 29.54 68.60 2.03 43.57 16 20 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 1.55 7.65 -2.39 -0.02 1.54 16 26 H 0.27 2.07 8.06 -2.91 -0.02 2.05 16 27 H 0.02 0.84 8.12 -2.39 -0.02 0.82 16 28 H 0.10 4.32 5.56 -2.39 -0.01 4.31 16 29 H 0.08 3.10 6.66 -2.38 -0.02 3.09 16 30 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.10 5.55 6.17 -2.39 -0.01 5.53 16 35 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -64.82 287.94 2.31 -62.51 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.09 Total: 11.32 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 4.29 Total: -6.37 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -4.29 Total: -93.22 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.81 Total: -17.82 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -64.82 2.31 -62.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.332 kcal (2) G-P(sol) polarization free energy of solvation -64.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds