Wall clock time and date at job start Mon Mar 30 2020 03:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.54228 * 2 1 4 4 N 1.30275 * 126.28522 * 299.82176 * 3 2 1 5 5 N 1.28664 * 109.38075 * 179.73173 * 4 3 2 6 6 C 1.30269 * 109.38243 * 0.44376 * 5 4 3 7 7 C 1.50700 * 126.28474 * 179.82267 * 6 5 4 8 8 C 1.50702 * 109.46869 * 89.69268 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 O 1.34360 * 107.43540 * 359.56760 * 6 5 4 17 17 C 1.53174 * 109.61866 * 120.22693 * 2 1 3 18 18 C 1.53094 * 109.16520 * 176.89147 * 17 2 1 19 19 O 1.42899 * 109.41192 * 302.38663 * 18 17 2 20 20 C 1.42900 * 114.09728 * 61.16309 * 19 18 17 21 21 C 1.53101 * 109.41462 * 298.83680 * 20 19 18 22 22 H 1.08995 * 109.47029 * 59.99765 * 1 2 3 23 23 H 1.09003 * 109.46807 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46881 * 299.99635 * 1 2 3 25 25 H 1.09004 * 109.47210 * 329.69562 * 7 6 5 26 26 H 1.08994 * 109.47551 * 209.69214 * 7 6 5 27 27 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 28 28 H 1.09001 * 109.52055 * 296.79585 * 17 2 1 29 29 H 1.09000 * 109.52662 * 56.98167 * 17 2 1 30 30 H 1.09002 * 109.47846 * 182.40636 * 18 17 2 31 31 H 1.09000 * 109.47749 * 62.37321 * 18 17 2 32 32 H 1.09003 * 109.48373 * 178.85782 * 20 19 18 33 33 H 1.08995 * 109.49480 * 58.82486 * 20 19 18 34 34 H 1.09002 * 109.51684 * 297.70654 * 21 20 19 35 35 H 1.08999 * 109.57529 * 177.54500 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4201 0.0000 4 7 1.7998 2.3214 -0.9111 5 7 2.3823 3.4209 -0.5837 6 6 3.0158 3.2559 0.5426 7 6 3.8277 4.2965 1.2700 8 6 2.9366 5.0557 2.2191 9 1 1.8875 4.8091 2.2889 10 6 3.4621 6.0610 3.0029 11 7 4.7398 6.3611 2.9181 12 14 2.3592 6.9969 4.1848 13 1 0.9738 6.4707 4.0910 14 1 2.8609 6.8243 5.5719 15 1 2.3664 8.4393 3.8318 16 8 2.8077 1.9893 0.9397 17 6 2.0443 -0.7264 1.2467 18 6 3.5732 -0.7884 1.1973 19 8 3.9833 -1.4477 -0.0023 20 6 3.5714 -0.7877 -1.2009 21 6 2.0424 -0.7256 -1.2480 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.2625 4.9879 0.5482 26 1 4.6244 3.8086 1.8314 27 1 5.1094 7.0686 3.4693 28 1 1.7303 -0.1850 2.1391 29 1 1.6393 -1.7380 1.2719 30 1 3.9426 -1.3417 2.0608 31 1 3.9787 0.2233 1.2130 32 1 3.9395 -1.3405 -2.0653 33 1 3.9769 0.2239 -1.2168 34 1 1.6374 -1.7373 -1.2731 35 1 1.7261 -0.1843 -2.1396 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414340.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:44 Heat of formation + Delta-G solvation = -29.611214 kcal Electronic energy + Delta-G solvation = -19151.108964 eV Core-core repulsion = 16150.544432 eV Total energy + Delta-G solvation = -3000.564532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.55183 -39.62350 -35.59325 -35.41284 -33.64550 -31.25760 -31.04741 -28.63055 -27.81291 -24.22788 -23.95464 -23.41305 -22.51888 -21.26522 -19.67708 -17.09528 -16.71002 -16.14027 -15.96135 -15.76942 -15.16030 -14.87061 -14.71791 -14.31289 -13.34477 -12.94125 -12.74301 -12.43430 -12.25220 -12.11611 -12.08233 -11.76587 -11.66291 -11.39061 -11.23265 -10.99276 -10.89418 -10.69123 -10.45248 -10.31278 -10.02895 -9.83724 -9.59468 -8.66036 -8.60896 -6.28678 -4.34683 1.90188 2.90479 3.12916 3.19812 3.27862 3.33559 3.82407 4.18919 4.28323 4.49844 4.61046 4.77171 4.87242 5.07336 5.14581 5.30842 5.41170 5.45823 5.51219 5.55078 5.59168 5.66245 5.74474 5.80120 5.91562 5.99150 6.04269 6.09971 6.26408 6.52175 7.07451 7.12403 7.16087 7.64792 7.88335 8.65837 9.07811 9.30397 10.81659 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.031653 B = 0.005683 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.384176 B = 4926.214469 C = 5047.643356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.043 3.957 3 C 0.126 3.874 4 N -0.286 5.286 5 N -0.319 5.319 6 C 0.222 3.778 7 C 0.104 3.896 8 C -0.524 4.524 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.888 5.888 12 Si 0.907 3.093 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.279 1.279 16 O -0.225 6.225 17 C -0.148 4.148 18 C 0.053 3.947 19 O -0.382 6.382 20 C 0.059 3.941 21 C -0.141 4.141 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.268 0.732 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 -15.195 -3.876 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 C -0.086 4.086 4 N -0.132 5.132 5 N -0.164 5.164 6 C 0.013 3.987 7 C 0.065 3.935 8 C -0.563 4.563 9 H 0.079 0.921 10 C -0.138 4.138 11 N -0.525 5.525 12 Si 0.733 3.267 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.205 1.205 16 O -0.105 6.105 17 C -0.186 4.186 18 C -0.024 4.024 19 O -0.300 6.300 20 C -0.018 4.018 21 C -0.179 4.179 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.565 -14.654 -4.888 16.108 hybrid contribution -0.292 0.443 1.723 1.802 sum -4.857 -14.211 -3.166 15.349 Atomic orbital electron populations 1.21868 0.91447 1.02685 1.03541 1.19069 0.96420 0.83009 0.97362 1.27398 0.96141 0.98713 0.86379 1.74157 1.18922 0.96386 1.23776 1.74409 1.12108 1.16524 1.13405 1.29535 0.95995 0.81791 0.91410 1.18189 0.93156 0.87279 0.94841 1.20847 0.95311 1.18197 1.21929 0.92096 1.24942 0.95332 0.96541 0.96941 1.69935 1.11931 1.30722 1.39941 0.86293 0.80512 0.79624 0.80235 1.19595 1.20602 1.20490 1.84833 1.54334 1.25540 1.45839 1.22326 0.97440 1.01448 0.97388 1.22733 0.93372 0.98696 0.87596 1.87896 1.77215 1.51189 1.13732 1.22577 0.93533 0.97755 0.87954 1.22313 0.97045 1.01241 0.97282 0.91012 0.90994 0.91914 0.91189 0.92922 0.92273 0.89827 0.89589 0.88360 0.91969 0.88412 0.93471 0.89439 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.48 37.16 0.31 -1.24 16 2 C 0.04 0.57 0.76 -155.48 -0.12 0.45 16 3 C 0.13 2.29 5.11 -12.94 -0.07 2.22 16 4 N -0.29 -5.94 12.22 32.55 0.40 -5.55 16 5 N -0.32 -7.53 12.22 32.55 0.40 -7.14 16 6 C 0.22 5.18 7.67 -12.94 -0.10 5.08 16 7 C 0.10 2.62 5.60 -29.03 -0.16 2.46 16 8 C -0.52 -14.39 9.09 -34.44 -0.31 -14.70 16 9 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 10 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 12 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 13 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 O -0.23 -4.68 8.43 5.39 0.05 -4.63 16 17 C -0.15 -1.76 4.67 -26.59 -0.12 -1.89 16 18 C 0.05 0.69 6.58 37.21 0.24 0.94 16 19 O -0.38 -5.24 10.77 -35.23 -0.38 -5.62 16 20 C 0.06 0.74 6.62 37.21 0.25 0.99 16 21 C -0.14 -1.61 4.91 -26.59 -0.13 -1.74 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 26 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.98 5.89 -51.93 -0.31 0.67 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.71 7.38 -51.93 -0.38 0.33 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 291.61 15.07 4.39 4.39 Total: -1.00 -30.22 291.61 -4.61 -34.84 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.88 Total: -2.26 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.31 Total: -5.74 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 1.53 Total: -36.90 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.33 Total: -10.25 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.22 -4.61 -34.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414340.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.225 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds