Wall clock time and date at job start Mon Mar 30 2020 03:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.52286 * 2 1 4 4 N 1.29940 * 126.28617 * 239.85313 * 3 2 1 5 5 O 1.21299 * 110.25396 * 180.02562 * 4 3 2 6 6 C 1.33644 * 109.80895 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.55345 * 180.26346 * 6 5 4 8 8 C 1.50697 * 109.46940 * 269.69479 * 7 6 5 9 9 H 1.07995 * 120.00585 * 359.97438 * 8 7 6 10 10 C 1.37886 * 119.99581 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00060 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99815 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47260 * 90.00002 * 12 10 8 14 14 H 1.48495 * 109.47057 * 210.00002 * 12 10 8 15 15 H 1.48500 * 109.47060 * 330.00025 * 12 10 8 16 16 N 1.31134 * 106.89611 * 0.02562 * 6 5 4 17 17 C 1.53174 * 109.52417 * 239.87223 * 2 1 3 18 18 C 1.53178 * 109.03611 * 297.01192 * 17 2 1 19 19 C 1.53094 * 109.16348 * 303.01841 * 18 17 2 20 20 O 1.42899 * 109.41293 * 57.60808 * 19 18 17 21 21 C 1.42899 * 114.10073 * 298.84117 * 20 19 18 22 22 H 1.09002 * 109.46734 * 60.00296 * 1 2 3 23 23 H 1.09002 * 109.46940 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47252 * 300.00099 * 1 2 3 25 25 H 1.09007 * 109.46611 * 29.69262 * 7 6 5 26 26 H 1.08999 * 109.47203 * 149.69394 * 7 6 5 27 27 H 0.97003 * 120.00100 * 179.97438 * 11 10 8 28 28 H 1.09001 * 109.54270 * 56.87767 * 17 2 1 29 29 H 1.09000 * 109.54616 * 177.05820 * 17 2 1 30 30 H 1.08997 * 109.52191 * 62.92544 * 18 17 2 31 31 H 1.08997 * 109.52187 * 183.11345 * 18 17 2 32 32 H 1.08997 * 109.47689 * 177.59186 * 19 18 17 33 33 H 1.09001 * 109.47990 * 297.61457 * 19 18 17 34 34 H 1.08993 * 109.48162 * 301.17519 * 21 20 19 35 35 H 1.09005 * 109.48634 * 181.13834 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 7 2.7864 1.9694 -0.9057 5 8 3.0178 3.1243 -0.6158 6 6 2.4159 3.4311 0.5373 7 6 2.4490 4.7637 1.2402 8 6 3.6157 4.8000 2.1934 9 1 4.2677 3.9436 2.2817 10 6 3.8507 5.9266 2.9528 11 7 3.0570 6.9696 2.8449 12 14 5.2964 5.9713 4.1348 13 1 6.4940 6.4979 3.4324 14 1 4.9690 6.8530 5.2840 15 1 5.5754 4.5986 4.6278 16 7 1.7867 2.3525 0.9376 17 6 2.0419 -0.7246 -1.2486 18 6 1.5891 -2.1871 -1.1985 19 6 2.0997 -2.8272 0.0951 20 8 1.6123 -2.0868 1.2159 21 6 2.0429 -0.7246 1.2473 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 2.5565 5.5603 0.5039 26 1 1.5217 4.9048 1.7954 27 1 3.2221 7.7621 3.3794 28 1 1.6347 -0.2472 -2.1399 29 1 3.1306 -0.6795 -1.2759 30 1 0.5003 -2.2322 -1.2222 31 1 1.9955 -2.7238 -2.0556 32 1 1.7443 -3.8558 0.1564 33 1 3.1896 -2.8183 0.0994 34 1 3.1320 -0.6880 1.2668 35 1 1.6466 -0.2384 2.1388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260459297.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:57 Heat of formation + Delta-G solvation = 0.215717 kcal Electronic energy + Delta-G solvation = -18779.403006 eV Core-core repulsion = 15780.131867 eV Total energy + Delta-G solvation = -2999.271139 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.79915 -39.85689 -35.83490 -34.46121 -33.43034 -32.11703 -31.30900 -28.50247 -27.10615 -25.27011 -24.44883 -23.86163 -22.17584 -21.10571 -18.88624 -17.51631 -16.95469 -16.34293 -16.05625 -15.89658 -15.14988 -14.99531 -14.70982 -13.86330 -13.41059 -13.10428 -12.80613 -12.51543 -12.42356 -12.10703 -11.85688 -11.58640 -11.39279 -11.14962 -11.08490 -10.82712 -10.78549 -10.75078 -10.49838 -10.24233 -10.06729 -9.91310 -9.51005 -8.93903 -8.63224 -6.26706 -4.32485 1.93957 2.94776 3.23048 3.29566 3.34159 3.65158 3.81842 4.15148 4.30911 4.37806 4.71013 4.77130 4.85482 5.01506 5.04102 5.13784 5.27267 5.47242 5.59744 5.61689 5.66141 5.77564 5.80473 5.84889 6.02117 6.06509 6.17759 6.32935 6.57291 6.67999 7.07217 7.10672 7.17794 7.66571 7.90138 8.67699 8.93455 9.32538 10.83715 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.034585 B = 0.005065 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.404210 B = 5526.826716 C = 5850.681863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.004 3.996 3 C 0.166 3.834 4 N -0.406 5.406 5 O 0.059 5.941 6 C 0.239 3.761 7 C 0.101 3.899 8 C -0.524 4.524 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.888 5.888 12 Si 0.906 3.094 13 H -0.277 1.277 14 H -0.283 1.283 15 H -0.272 1.272 16 N -0.504 5.504 17 C -0.108 4.108 18 C -0.155 4.155 19 C 0.055 3.945 20 O -0.374 6.374 21 C 0.078 3.922 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.268 0.732 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 -14.779 -6.295 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.002 3.998 3 C -0.107 4.107 4 N -0.119 5.119 5 O 0.005 5.995 6 C 0.021 3.979 7 C 0.062 3.938 8 C -0.563 4.563 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.525 5.525 12 Si 0.733 3.267 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.197 1.197 16 N -0.238 5.238 17 C -0.146 4.146 18 C -0.192 4.192 19 C -0.021 4.021 20 O -0.292 6.292 21 C 0.001 3.999 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.242 -15.314 -6.520 16.957 hybrid contribution 1.037 0.519 0.395 1.225 sum -2.205 -14.795 -6.126 16.164 Atomic orbital electron populations 1.21777 0.91821 1.02571 1.02771 1.19414 0.97266 0.85416 0.97679 1.25369 0.97342 0.98768 0.89213 1.74478 1.19843 0.93304 1.24257 1.85257 1.56525 1.21398 1.36360 1.30169 0.85540 0.99582 0.82643 1.18210 1.00723 0.80496 0.94367 1.20784 1.11307 1.01262 1.22927 0.92089 1.24921 0.96885 0.95019 0.96830 1.69920 1.37476 1.04566 1.40548 0.86356 0.81892 0.78278 0.80196 1.20277 1.20827 1.19671 1.71901 1.25513 0.99519 1.26818 1.21571 1.01459 0.94692 0.96877 1.22245 1.02406 0.95971 0.98619 1.22624 0.98208 0.95559 0.85751 1.87959 1.74164 1.22062 1.45061 1.22571 0.98596 0.81421 0.97342 0.92750 0.90964 0.91219 0.92429 0.91310 0.92244 0.90869 0.91203 0.90533 0.90635 0.88804 0.93185 0.92999 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.06 37.16 0.30 -1.48 16 2 C 0.00 0.07 0.74 -155.52 -0.12 -0.05 16 3 C 0.17 3.17 6.41 -156.38 -1.00 2.17 16 4 N -0.41 -8.18 11.47 30.90 0.35 -7.82 16 5 O 0.06 1.27 11.31 18.10 0.20 1.48 16 6 C 0.24 5.36 7.70 -13.06 -0.10 5.26 16 7 C 0.10 2.45 5.60 -29.04 -0.16 2.29 16 8 C -0.52 -13.99 9.09 -34.44 -0.31 -14.31 16 9 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 10 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 12 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 N -0.50 -10.84 11.55 -9.87 -0.11 -10.96 16 17 C -0.11 -1.38 4.32 -26.55 -0.11 -1.49 16 18 C -0.15 -1.51 5.77 -26.59 -0.15 -1.66 16 19 C 0.06 0.56 6.84 37.21 0.25 0.82 16 20 O -0.37 -4.95 10.19 -35.23 -0.36 -5.31 16 21 C 0.08 1.15 5.52 37.21 0.21 1.35 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.84 6.14 -51.93 -0.32 0.53 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16 26 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.95 8.13 -51.93 -0.42 0.52 16 30 H 0.08 0.72 6.62 -51.93 -0.34 0.37 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 292.56 15.07 4.41 4.41 Total: -1.00 -28.22 292.56 -5.94 -34.16 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.85 Total: -2.38 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.30 Total: -5.41 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.98 Total: -42.59 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.15 Total: -3.84 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.22 -5.94 -34.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459297.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.380 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds