Wall clock time and date at job start Mon Mar 30 2020 03:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99850 * 2 1 4 4 H 1.48494 * 109.47571 * 240.00279 * 3 2 1 5 5 H 1.48505 * 109.47330 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47123 * 119.99909 * 3 2 1 7 7 C 1.37878 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99747 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.54090 * 57.15676 * 9 7 2 11 11 C 1.54229 * 110.60402 * 180.02562 * 9 7 2 12 12 C 1.51312 * 103.69250 * 118.44318 * 11 9 7 13 13 O 1.21222 * 125.39990 * 180.02562 * 12 11 9 14 14 N 1.34227 * 109.01858 * 0.13197 * 12 11 9 15 15 C 1.46504 * 122.71133 * 179.97438 * 14 12 11 16 16 C 1.53116 * 109.52422 * 59.77142 * 15 14 12 17 17 C 1.53034 * 109.27474 * 182.50367 * 16 15 14 18 18 N 1.46851 * 109.57726 * 59.08500 * 17 16 15 19 19 C 1.46841 * 111.19520 * 298.28839 * 18 17 16 20 20 C 1.53048 * 109.52439 * 61.74172 * 19 18 17 21 21 C 1.33877 * 114.52459 * 359.85468 * 14 12 11 22 22 O 1.21225 * 125.39453 * 180.02562 * 21 14 12 23 23 H 0.96997 * 119.99888 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.60676 * 237.03726 * 11 9 7 25 25 H 1.09002 * 110.60629 * 359.84537 * 11 9 7 26 26 H 1.08999 * 109.51753 * 179.89836 * 15 14 12 27 27 H 1.09003 * 109.50147 * 302.38458 * 16 15 14 28 28 H 1.08999 * 109.50228 * 62.49684 * 16 15 14 29 29 H 1.09003 * 109.41478 * 299.06647 * 17 16 15 30 30 H 1.09005 * 109.45654 * 179.12616 * 17 16 15 31 31 H 1.00888 * 110.99758 * 62.38624 * 18 17 16 32 32 H 1.08998 * 109.46777 * 301.72773 * 19 18 17 33 33 H 1.08997 * 109.46333 * 181.75663 * 19 18 17 34 34 H 1.08999 * 109.50169 * 180.87897 * 20 19 18 35 35 H 1.08996 * 109.52831 * 60.77810 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5802 -2.5534 -0.8578 11 6 2.2300 -3.6910 -0.0005 12 6 1.9163 -4.4121 1.2921 13 8 2.4664 -5.4178 1.6866 14 7 0.9305 -3.7603 1.9285 15 6 0.3903 -4.2039 3.2161 16 6 1.5090 -4.2221 4.2614 17 6 0.9528 -4.7455 5.5875 18 7 0.4142 -6.0981 5.3956 19 6 -0.6934 -6.0966 4.4314 20 6 -0.1860 -5.6149 3.0702 21 6 0.4833 -2.6708 1.2919 22 8 -0.3981 -1.9386 1.6877 23 1 -0.4850 0.8400 0.0004 24 1 2.0445 -4.3397 -0.8566 25 1 3.2619 -3.3398 -0.0033 26 1 -0.3961 -3.5204 3.5360 27 1 2.3135 -4.8748 3.9222 28 1 1.8936 -3.2117 4.4004 29 1 0.1586 -4.0840 5.9336 30 1 1.7506 -4.7743 6.3298 31 1 1.1396 -6.7392 5.1119 32 1 -1.4799 -5.4288 4.7828 33 1 -1.0915 -7.1066 4.3340 34 1 -1.0117 -5.5991 2.3589 35 1 0.5908 -6.2901 2.7113 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260513339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:23 Heat of formation + Delta-G solvation = -70.273475 kcal Electronic energy + Delta-G solvation = -19494.184276 eV Core-core repulsion = 16491.856496 eV Total energy + Delta-G solvation = -3002.327780 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.09752 -38.21316 -37.47632 -34.67630 -33.78862 -31.98376 -30.81791 -29.44546 -26.11676 -23.94788 -23.28803 -22.88042 -21.40941 -20.06460 -18.66480 -16.89326 -16.66484 -15.73338 -15.42091 -14.81683 -14.65860 -14.59213 -14.24235 -13.82828 -13.44988 -13.03629 -12.97910 -12.57936 -12.49931 -12.19664 -12.15087 -11.87611 -11.16855 -11.03036 -10.89183 -10.76332 -10.67059 -10.62737 -10.16039 -9.57677 -9.30126 -8.87358 -8.81283 -8.58642 -8.36984 -6.17309 -4.30183 2.51555 3.21910 3.29179 3.29874 3.37489 3.85133 4.30092 4.33247 4.71909 4.96907 5.12194 5.15713 5.18799 5.28117 5.43731 5.46464 5.55035 5.72432 5.81259 5.86498 5.94383 5.99308 6.03420 6.03871 6.26193 6.27096 6.49031 6.68943 6.98165 7.15036 7.34369 7.66484 7.77383 7.98149 8.23657 8.67840 9.08357 9.35143 10.86693 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.031505 B = 0.006782 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.542436 B = 4127.446767 C = 4370.275576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.070 3.930 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.028 3.972 10 H 0.075 0.925 11 C -0.156 4.156 12 C 0.533 3.467 13 O -0.522 6.522 14 N -0.578 5.578 15 C 0.130 3.870 16 C -0.171 4.171 17 C 0.062 3.938 18 N -0.686 5.686 19 C 0.063 3.937 20 C -0.170 4.170 21 C 0.516 3.484 22 O -0.458 6.458 23 H 0.266 0.734 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.342 0.658 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 -8.821 5.359 10.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.007 3.993 10 H 0.092 0.908 11 C -0.195 4.195 12 C 0.324 3.676 13 O -0.399 6.399 14 N -0.323 5.323 15 C 0.028 3.972 16 C -0.211 4.211 17 C -0.068 4.068 18 N -0.314 5.314 19 C -0.068 4.068 20 C -0.210 4.210 21 C 0.306 3.694 22 O -0.325 6.325 23 H 0.076 0.924 24 H 0.114 0.886 25 H 0.126 0.874 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.159 0.841 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.010 -8.741 6.355 10.807 hybrid contribution 0.901 1.181 -0.797 1.686 sum 0.892 -7.560 5.558 9.426 Atomic orbital electron populations 1.70054 1.05753 1.27305 1.44037 1.25111 0.94964 0.99646 0.94151 0.86563 0.79595 0.82567 0.78806 1.19828 1.21036 1.20137 1.20696 0.92709 0.88302 1.55868 0.91312 1.19544 0.93409 0.93993 0.92356 0.90753 1.22651 1.03956 0.98449 0.94474 1.21122 0.77151 0.82442 0.86841 1.90596 1.53062 1.24196 1.72002 1.47515 1.35751 1.27999 1.20993 1.21157 0.96540 0.96091 0.83425 1.22640 0.99074 1.03134 0.96220 1.21974 0.99458 0.89840 0.95518 1.60708 1.13251 1.08693 1.48760 1.21970 0.94226 1.01571 0.89014 1.22640 1.01834 0.96868 0.99627 1.22610 0.81610 0.76952 0.88189 1.90649 1.28233 1.43323 1.70284 0.92396 0.88552 0.87350 0.88592 0.90199 0.91064 0.90814 0.90457 0.84067 0.90804 0.90475 0.91260 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.66 11.29 55.43 0.63 -23.04 16 2 C 0.07 1.86 5.31 -17.82 -0.09 1.77 16 3 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -13.75 8.54 -34.44 -0.29 -14.05 16 8 H 0.07 1.68 7.39 -52.49 -0.39 1.30 16 9 C 0.03 0.65 2.96 -91.98 -0.27 0.38 16 10 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 11 C -0.16 -2.91 6.65 -26.94 -0.18 -3.09 16 12 C 0.53 10.34 7.42 -10.93 -0.08 10.26 16 13 O -0.52 -10.38 14.81 5.61 0.08 -10.29 16 14 N -0.58 -11.58 2.49 -108.03 -0.27 -11.85 16 15 C 0.13 2.25 2.65 -67.81 -0.18 2.07 16 16 C -0.17 -2.64 5.38 -26.65 -0.14 -2.78 16 17 C 0.06 0.78 6.55 -3.83 -0.03 0.76 16 18 N -0.69 -8.34 6.87 -113.81 -0.78 -9.12 16 19 C 0.06 0.76 6.55 -3.83 -0.03 0.74 16 20 C -0.17 -2.50 5.38 -26.65 -0.14 -2.64 16 21 C 0.52 12.23 7.28 -11.09 -0.08 12.15 16 22 O -0.46 -12.38 15.18 5.61 0.09 -12.29 16 23 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 24 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 25 H 0.11 1.96 7.47 -51.93 -0.39 1.57 16 26 H 0.10 1.77 7.41 -51.93 -0.38 1.38 16 27 H 0.08 1.32 6.58 -51.93 -0.34 0.98 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.34 3.98 8.86 -39.30 -0.35 3.63 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.27 6.58 -51.93 -0.34 0.92 16 LS Contribution 283.89 15.07 4.28 4.28 Total: -1.00 -29.38 283.89 -7.23 -36.61 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.71 Total: 4.69 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -1.52 Total: 5.56 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.42 Total: -44.00 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.17 Total: -22.58 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.38 -7.23 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260513339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.663 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds