Wall clock time and date at job start Mon Mar 30 2020 03:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 N 1.31126 * 126.55118 * 89.70576 * 10 9 7 12 12 C 1.34503 * 105.61299 * 179.91643 * 11 10 9 13 13 C 1.50697 * 126.28879 * 180.12916 * 12 11 10 14 14 C 1.53004 * 109.47057 * 270.24378 * 13 12 11 15 15 C 1.53179 * 109.54338 * 294.82079 * 14 13 12 16 16 C 1.53101 * 109.15773 * 183.24011 * 15 14 13 17 17 O 1.42910 * 109.48430 * 57.47670 * 16 15 14 18 18 C 1.42905 * 114.09646 * 298.88892 * 17 16 15 19 19 C 1.53093 * 109.41742 * 61.15673 * 18 17 16 20 20 N 1.29949 * 107.41984 * 0.35404 * 12 11 10 21 21 O 1.21299 * 110.25253 * 359.77689 * 20 12 11 22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 23 23 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 24 24 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 25 25 H 1.08999 * 109.46821 * 30.24103 * 13 12 11 26 26 H 1.08996 * 109.47269 * 150.23964 * 13 12 11 27 27 H 1.09006 * 109.54279 * 55.00194 * 14 13 12 28 28 H 1.08999 * 109.51779 * 303.06037 * 15 14 13 29 29 H 1.09004 * 109.51569 * 63.24727 * 15 14 13 30 30 H 1.08999 * 109.40756 * 297.49947 * 16 15 14 31 31 H 1.08990 * 109.49277 * 177.50614 * 16 15 14 32 32 H 1.09001 * 109.48036 * 301.17453 * 18 17 16 33 33 H 1.09001 * 109.49003 * 181.14812 * 18 17 16 34 34 H 1.08998 * 109.51800 * 182.48467 * 19 18 17 35 35 H 1.09000 * 109.57185 * 62.32622 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 7 2.7458 -4.2371 1.0380 12 6 3.5569 -5.1937 0.5522 13 6 4.3839 -6.1582 1.3626 14 6 5.7599 -5.5469 1.6344 15 6 6.5173 -5.3819 0.3132 16 6 7.9218 -4.8457 0.6028 17 8 8.5986 -5.7372 1.4913 18 6 7.9604 -5.8919 2.7606 19 6 6.5582 -6.4721 2.5579 20 7 3.5002 -5.1302 -0.7445 21 8 2.7436 -4.2469 -1.0890 22 1 -0.4849 0.8401 0.0041 23 1 0.6280 -2.5591 0.8866 24 1 0.6206 -2.5548 -0.8933 25 1 3.8826 -6.3601 2.3093 26 1 4.5029 -7.0893 0.8087 27 1 5.6390 -4.5733 2.1095 28 1 6.5932 -6.3478 -0.1861 29 1 5.9831 -4.6804 -0.3277 30 1 7.8456 -3.8611 1.0641 31 1 8.4809 -4.7681 -0.3296 32 1 7.8847 -4.9209 3.2501 33 1 8.5471 -6.5678 3.3827 34 1 6.0535 -6.5495 3.5209 35 1 6.6341 -7.4609 2.1058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260846941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:03 Heat of formation + Delta-G solvation = -6.658524 kcal Electronic energy + Delta-G solvation = -18412.247771 eV Core-core repulsion = 15412.678543 eV Total energy + Delta-G solvation = -2999.569228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.76569 -39.51178 -36.01795 -34.56069 -33.56668 -31.91307 -31.17208 -28.88945 -28.24720 -24.15183 -23.96961 -23.59899 -22.32336 -20.39953 -20.07349 -17.50286 -16.67562 -16.37241 -16.11163 -16.05765 -15.17189 -14.83085 -14.69104 -14.34828 -13.46980 -13.11895 -13.00157 -12.53765 -12.49112 -12.13186 -12.05945 -11.44209 -11.35904 -11.17919 -11.07958 -10.82507 -10.71204 -10.62724 -10.34673 -10.30102 -10.11316 -9.86040 -9.60372 -8.92462 -8.64630 -6.27824 -4.33432 1.95387 2.96042 3.20795 3.28766 3.33671 3.76845 3.78989 4.16643 4.30116 4.54332 4.70750 4.74346 4.83621 4.91196 5.10644 5.12830 5.26648 5.39610 5.52511 5.54619 5.59855 5.64177 5.77169 5.81889 5.94402 6.06622 6.14041 6.28200 6.59545 6.69850 7.07397 7.09904 7.16977 7.65737 7.89360 8.66980 8.95335 9.31558 10.82683 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.024807 B = 0.005121 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.450165 B = 5465.885848 C = 6096.268145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.100 3.900 10 C 0.238 3.762 11 N -0.508 5.508 12 C 0.160 3.840 13 C -0.016 4.016 14 C -0.085 4.085 15 C -0.150 4.150 16 C 0.061 3.939 17 O -0.386 6.386 18 C 0.061 3.939 19 C -0.148 4.148 20 N -0.408 5.408 21 O 0.058 5.942 22 H 0.267 0.733 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.996 -10.533 3.671 15.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.061 3.939 10 C 0.020 3.980 11 N -0.242 5.242 12 C -0.113 4.113 13 C -0.055 4.055 14 C -0.105 4.105 15 C -0.188 4.188 16 C -0.015 4.015 17 O -0.304 6.304 18 C -0.016 4.016 19 C -0.186 4.186 20 N -0.122 5.122 21 O 0.004 5.996 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.110 0.890 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.500 -11.105 3.517 16.369 hybrid contribution -0.090 1.211 0.020 1.215 sum 11.410 -9.894 3.537 15.511 Atomic orbital electron populations 1.69934 1.06034 1.27519 1.49016 1.24927 0.94988 0.99443 0.94343 0.86306 0.79974 0.82569 0.77879 1.19615 1.20579 1.20610 1.20821 0.93229 0.88843 1.53272 0.92071 1.18208 0.89906 0.84592 1.01170 1.30138 0.94397 0.94576 0.78929 1.71951 1.13369 1.09430 1.29471 1.25637 0.98847 0.98106 0.88749 1.19876 0.92568 0.94481 0.98554 1.21166 0.93173 0.99915 0.96237 1.22255 0.96090 1.02880 0.97558 1.22586 0.92815 0.92257 0.93854 1.87906 1.50400 1.66425 1.25709 1.22565 0.93136 1.00343 0.85575 1.22220 0.96254 0.99760 1.00322 1.74505 1.12883 1.09135 1.15686 1.85250 1.43087 1.34644 1.36642 0.92300 0.91382 0.92406 0.88980 0.89680 0.90251 0.90898 0.90623 0.93142 0.88849 0.93112 0.88903 0.90489 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.96 9.09 -34.44 -0.31 -14.27 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.10 2.44 5.60 -29.04 -0.16 2.28 16 10 C 0.24 5.34 7.70 -13.06 -0.10 5.24 16 11 N -0.51 -10.97 11.55 -9.87 -0.11 -11.08 16 12 C 0.16 2.99 6.70 -156.36 -1.05 1.94 16 13 C -0.02 -0.22 5.32 -27.88 -0.15 -0.37 16 14 C -0.09 -1.08 2.26 -90.43 -0.20 -1.29 16 15 C -0.15 -1.98 5.18 -26.59 -0.14 -2.12 16 16 C 0.06 0.74 6.84 37.21 0.25 1.00 16 17 O -0.39 -4.79 10.77 -35.23 -0.38 -5.17 16 18 C 0.06 0.61 6.84 37.21 0.25 0.86 16 19 C -0.15 -1.46 5.43 -26.59 -0.14 -1.61 16 20 N -0.41 -8.13 11.58 30.90 0.36 -7.77 16 21 O 0.06 1.24 11.31 18.12 0.20 1.44 16 22 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 23 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 24 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 25 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.18 7.04 -51.93 -0.37 0.81 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -28.71 296.57 -6.57 -35.29 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.98 Total: -2.34 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -1.85 Total: -6.66 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.98 Total: -42.63 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.17 Total: -3.73 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.71 -6.57 -35.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260846941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.628 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds