Wall clock time and date at job start Mon Mar 30 2020 03:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00144 * 2 1 4 4 H 1.48499 * 109.46689 * 239.99844 * 3 2 1 5 5 H 1.48493 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47262 * 119.99757 * 3 2 1 7 7 C 1.38814 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00321 * 163.07536 * 7 2 1 9 9 N 1.36944 * 120.00013 * 343.07459 * 7 2 1 10 10 C 1.46924 * 120.63506 * 151.81159 * 9 7 2 11 11 C 1.53196 * 108.88893 * 126.20415 * 10 9 7 12 12 C 1.53230 * 109.19571 * 54.42410 * 11 10 9 13 13 C 1.52922 * 109.83155 * 298.99300 * 12 11 10 14 14 C 1.46933 * 120.63427 * 331.79155 * 9 7 2 15 15 C 1.53123 * 109.56591 * 59.41504 * 12 11 10 16 16 C 1.50608 * 109.17588 * 175.08641 * 15 12 11 17 17 O 1.21223 * 119.36153 * 151.02314 * 16 15 12 18 18 N 1.34135 * 121.27760 * 331.01902 * 16 15 12 19 19 C 1.34141 * 122.63299 * 0.60776 * 18 16 15 20 20 O 1.21220 * 119.36643 * 179.37965 * 19 18 16 21 21 C 1.50608 * 121.26851 * 359.40142 * 19 18 16 22 22 H 0.96995 * 119.99789 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.58721 * 246.06430 * 10 9 7 24 24 H 1.08999 * 109.58688 * 6.34782 * 10 9 7 25 25 H 1.09004 * 109.49049 * 174.52329 * 11 10 9 26 26 H 1.09004 * 109.49098 * 294.58312 * 11 10 9 27 27 H 1.09002 * 109.49006 * 301.13760 * 13 12 11 28 28 H 1.09005 * 109.50847 * 181.08306 * 13 12 11 29 29 H 1.09001 * 109.58951 * 353.51637 * 14 9 7 30 30 H 1.08997 * 109.58389 * 113.80339 * 14 9 7 31 31 H 1.08995 * 109.51669 * 294.97851 * 15 12 11 32 32 H 1.08997 * 109.51832 * 55.15944 * 15 12 11 33 33 H 0.97001 * 118.68234 * 180.62206 * 18 16 15 34 34 H 1.08998 * 109.51858 * 269.05434 * 21 19 18 35 35 H 1.08997 * 109.51967 * 148.86914 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2717 9 7 1.3701 -2.3623 0.3463 10 6 1.8136 -3.6530 -0.1978 11 6 2.0731 -4.6179 0.9634 12 6 0.8201 -4.6977 1.8418 13 6 0.5007 -3.3172 2.4167 14 6 0.2267 -2.3402 1.2690 15 6 -0.3629 -5.1910 1.0040 16 6 -1.5584 -5.3816 1.9000 17 8 -2.6724 -5.2470 1.4414 18 7 -1.4143 -5.6975 3.1956 19 6 -0.2135 -5.8505 3.7736 20 8 -0.1520 -6.1255 4.9526 21 6 1.0598 -5.6869 2.9860 22 1 -0.4849 0.8400 -0.0004 23 1 1.0388 -4.0617 -0.8465 24 1 2.7315 -3.5129 -0.7686 25 1 2.3086 -5.6065 0.5691 26 1 2.9111 -4.2543 1.5581 27 1 1.3488 -2.9619 3.0021 28 1 -0.3798 -3.3838 3.0557 29 1 0.0988 -1.3340 1.6682 30 1 -0.6768 -2.6404 0.7384 31 1 -0.5975 -4.4542 0.2359 32 1 -0.1053 -6.1398 0.5333 33 1 -2.2102 -5.8203 3.7362 34 1 1.3613 -6.6511 2.5767 35 1 1.8452 -5.3055 3.6385 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260966351.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:50 Heat of formation + Delta-G solvation = -58.535266 kcal Electronic energy + Delta-G solvation = -19639.352754 eV Core-core repulsion = 16637.533981 eV Total energy + Delta-G solvation = -3001.818773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.63705 -38.71301 -38.20135 -35.01937 -33.94128 -31.42111 -30.11701 -28.82689 -28.10489 -24.62298 -23.08974 -22.53372 -21.62218 -19.71589 -18.40161 -17.47554 -16.96342 -16.50138 -15.97567 -15.06287 -14.63215 -14.48647 -14.36471 -14.23804 -13.52096 -13.45673 -13.17143 -12.76458 -12.61112 -11.84446 -11.64247 -11.35410 -11.09299 -10.83115 -10.76467 -10.63320 -10.40399 -10.22503 -10.16767 -10.04341 -9.89687 -9.61298 -9.56254 -8.50655 -6.73449 -5.83905 -3.27308 1.60082 2.83359 2.93173 3.35669 3.42420 3.42781 4.12429 4.45062 4.62288 4.66114 4.80060 5.08822 5.33193 5.38143 5.42318 5.49806 5.64932 5.77711 5.91129 5.97606 6.06768 6.14614 6.27281 6.41253 6.43994 6.54800 6.68581 6.83637 6.92673 7.24085 7.43165 7.57930 7.74788 7.91396 8.39358 9.15164 9.78518 10.34189 11.24550 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.031291 B = 0.006639 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.608046 B = 4216.725158 C = 4366.260301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.141 3.859 11 C -0.120 4.120 12 C -0.052 4.052 13 C -0.140 4.140 14 C 0.170 3.830 15 C -0.138 4.138 16 C 0.531 3.469 17 O -0.505 6.505 18 N -0.677 5.677 19 C 0.533 3.467 20 O -0.516 6.516 21 C -0.136 4.136 22 H 0.255 0.745 23 H 0.021 0.979 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.023 0.977 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.407 0.593 34 H 0.107 0.893 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 -11.682 3.585 12.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.015 3.985 11 C -0.159 4.159 12 C -0.052 4.052 13 C -0.179 4.179 14 C 0.044 3.956 15 C -0.177 4.177 16 C 0.321 3.679 17 O -0.378 6.378 18 N -0.342 5.342 19 C 0.322 3.678 20 O -0.390 6.390 21 C -0.175 4.175 22 H 0.065 0.935 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.041 0.959 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.245 0.755 34 H 0.125 0.875 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.446 -11.552 3.789 12.243 hybrid contribution -0.028 0.828 0.334 0.893 sum 1.418 -10.725 4.123 11.577 Atomic orbital electron populations 1.70007 1.05267 1.25788 1.53411 1.25057 0.95264 0.98474 1.00659 0.86379 0.78934 0.83371 0.78132 1.20844 1.21641 1.21029 1.19122 0.92565 0.84761 1.42203 0.91635 1.44010 1.35863 1.01558 1.49816 1.20954 0.98001 0.86942 0.92614 1.22098 0.95475 0.99778 0.98540 1.20651 0.95675 0.95275 0.93628 1.22386 1.00511 0.94645 1.00353 1.20800 0.88874 0.98194 0.87740 1.22185 0.91702 1.05054 0.98768 1.21141 0.92051 0.73114 0.81606 1.90765 1.27113 1.46263 1.73643 1.44913 1.11004 1.65370 1.12916 1.21052 0.85660 0.73359 0.87692 1.90748 1.87594 1.44426 1.16223 1.22139 0.94399 1.02440 0.98547 0.93465 0.96104 0.92450 0.92321 0.91316 0.91458 0.93757 0.89295 0.95920 0.85435 0.87695 0.75473 0.87492 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 11.20 55.49 0.62 -24.86 16 2 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 3 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.26 -6.68 9.58 -15.06 -0.14 -6.83 16 8 H 0.07 1.67 7.88 -52.49 -0.41 1.25 16 9 N -0.59 -13.54 2.99 -172.31 -0.52 -14.05 16 10 C 0.14 2.56 6.05 -3.71 -0.02 2.53 16 11 C -0.12 -1.64 4.94 -26.51 -0.13 -1.77 16 12 C -0.05 -0.70 0.51 -154.29 -0.08 -0.78 16 13 C -0.14 -2.41 4.54 -26.67 -0.12 -2.53 16 14 C 0.17 3.76 4.84 -3.71 -0.02 3.74 16 15 C -0.14 -1.86 4.10 -27.86 -0.11 -1.97 16 16 C 0.53 7.78 6.89 -11.32 -0.08 7.71 16 17 O -0.51 -9.07 17.87 5.61 0.10 -8.97 16 18 N -0.68 -8.81 4.77 -11.74 -0.06 -8.87 16 19 C 0.53 7.05 6.85 -11.31 -0.08 6.97 16 20 O -0.52 -8.23 17.87 5.61 0.10 -8.13 16 21 C -0.14 -1.52 4.85 -27.85 -0.14 -1.66 16 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 23 H 0.02 0.38 6.84 -51.93 -0.36 0.02 16 24 H 0.06 1.03 7.93 -51.93 -0.41 0.62 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.04 0.75 6.47 -51.93 -0.34 0.41 16 29 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 30 H 0.02 0.54 6.63 -51.93 -0.34 0.19 16 31 H 0.13 2.08 5.08 -51.93 -0.26 1.81 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.41 4.86 8.79 -40.82 -0.36 4.50 16 34 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 276.54 15.07 4.17 4.17 Total: -1.00 -30.92 276.54 -6.09 -37.01 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.47 Total: 2.15 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.01 Total: 5.45 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.05 Total: -47.78 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.20 Total: -17.10 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.92 -6.09 -37.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966351.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.529 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds