Wall clock time and date at job start Mon Mar 30 2020 03:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00144 * 2 1 4 4 H 1.48499 * 109.46689 * 239.99844 * 3 2 1 5 5 H 1.48493 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47262 * 119.99757 * 3 2 1 7 7 C 1.38814 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00321 * 163.07536 * 7 2 1 9 9 N 1.36944 * 120.00013 * 343.07459 * 7 2 1 10 10 C 1.46924 * 120.63506 * 151.81159 * 9 7 2 11 11 C 1.53196 * 108.88893 * 126.20415 * 10 9 7 12 12 C 1.53230 * 109.19571 * 54.42410 * 11 10 9 13 13 C 1.52922 * 109.83155 * 298.99300 * 12 11 10 14 14 C 1.46933 * 120.63427 * 331.79155 * 9 7 2 15 15 C 1.53123 * 109.56591 * 59.41504 * 12 11 10 16 16 C 1.50608 * 109.17588 * 175.08641 * 15 12 11 17 17 O 1.21223 * 119.36153 * 151.02314 * 16 15 12 18 18 N 1.34135 * 121.27760 * 331.01902 * 16 15 12 19 19 C 1.34141 * 122.63299 * 0.60776 * 18 16 15 20 20 O 1.21220 * 119.36643 * 179.37965 * 19 18 16 21 21 C 1.50608 * 121.26851 * 359.40142 * 19 18 16 22 22 H 0.96995 * 119.99789 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.58721 * 246.06430 * 10 9 7 24 24 H 1.08999 * 109.58688 * 6.34782 * 10 9 7 25 25 H 1.09004 * 109.49049 * 174.52329 * 11 10 9 26 26 H 1.09004 * 109.49098 * 294.58312 * 11 10 9 27 27 H 1.09002 * 109.49006 * 301.13760 * 13 12 11 28 28 H 1.09005 * 109.50847 * 181.08306 * 13 12 11 29 29 H 1.09001 * 109.58951 * 353.51637 * 14 9 7 30 30 H 1.08997 * 109.58389 * 113.80339 * 14 9 7 31 31 H 1.08995 * 109.51669 * 294.97851 * 15 12 11 32 32 H 1.08997 * 109.51832 * 55.15944 * 15 12 11 33 33 H 0.97001 * 118.68234 * 180.62206 * 18 16 15 34 34 H 1.08998 * 109.51858 * 269.05434 * 21 19 18 35 35 H 1.08997 * 109.51967 * 148.86914 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2717 9 7 1.3701 -2.3623 0.3463 10 6 1.8136 -3.6530 -0.1978 11 6 2.0731 -4.6179 0.9634 12 6 0.8201 -4.6977 1.8418 13 6 0.5007 -3.3172 2.4167 14 6 0.2267 -2.3402 1.2690 15 6 -0.3629 -5.1910 1.0040 16 6 -1.5584 -5.3816 1.9000 17 8 -2.6724 -5.2470 1.4414 18 7 -1.4143 -5.6975 3.1956 19 6 -0.2135 -5.8505 3.7736 20 8 -0.1520 -6.1255 4.9526 21 6 1.0598 -5.6869 2.9860 22 1 -0.4849 0.8400 -0.0004 23 1 1.0388 -4.0617 -0.8465 24 1 2.7315 -3.5129 -0.7686 25 1 2.3086 -5.6065 0.5691 26 1 2.9111 -4.2543 1.5581 27 1 1.3488 -2.9619 3.0021 28 1 -0.3798 -3.3838 3.0557 29 1 0.0988 -1.3340 1.6682 30 1 -0.6768 -2.6404 0.7384 31 1 -0.5975 -4.4542 0.2359 32 1 -0.1053 -6.1398 0.5333 33 1 -2.2102 -5.8203 3.7362 34 1 1.3613 -6.6511 2.5767 35 1 1.8452 -5.3055 3.6385 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966351.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:50 Heat of formation + Delta-G solvation = -80.975777 kcal Electronic energy + Delta-G solvation = -19640.325847 eV Core-core repulsion = 16637.533981 eV Total energy + Delta-G solvation = -3002.791866 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.77719 -39.89987 -39.56023 -36.44364 -35.34470 -33.14387 -31.62010 -29.92698 -29.54725 -26.34222 -24.23400 -23.99050 -23.13411 -20.99153 -19.62320 -18.89224 -18.25646 -17.86858 -17.18413 -16.80610 -15.99660 -15.75433 -15.63949 -15.43370 -15.10696 -14.96282 -14.63259 -14.04124 -14.00809 -13.26138 -13.05246 -12.79640 -12.53206 -12.49136 -12.38824 -12.06372 -11.87557 -11.80493 -11.59828 -11.33053 -11.19960 -11.12000 -10.92362 -10.48474 -8.61914 -7.84682 -5.29076 0.48834 1.47753 1.49986 1.56142 1.74377 1.87866 2.53333 3.07877 3.29383 3.55133 3.56609 3.67844 3.76392 4.05347 4.24758 4.51181 4.57787 4.61964 4.73060 4.76795 4.86344 4.90013 5.02595 5.07093 5.20056 5.24459 5.32034 5.43655 5.57088 5.68637 5.78733 5.85126 6.34935 6.42429 6.81934 7.18389 7.92093 8.41523 9.21004 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.031291 B = 0.006639 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.608046 B = 4216.725158 C = 4366.260301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.300 1.300 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.071 0.929 9 N -0.608 5.608 10 C 0.132 3.868 11 C -0.106 4.106 12 C -0.042 4.042 13 C -0.129 4.129 14 C 0.180 3.820 15 C -0.134 4.134 16 C 0.537 3.463 17 O -0.546 6.546 18 N -0.673 5.673 19 C 0.536 3.464 20 O -0.542 6.542 21 C -0.124 4.124 22 H 0.247 0.753 23 H 0.024 0.976 24 H 0.057 0.943 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.043 0.957 30 H -0.003 1.003 31 H 0.096 0.904 32 H 0.151 0.849 33 H 0.410 0.590 34 H 0.154 0.846 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 -14.060 3.887 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.227 1.227 6 H -0.205 1.205 7 C -0.388 4.388 8 H 0.089 0.911 9 N -0.332 5.332 10 C 0.007 3.993 11 C -0.144 4.144 12 C -0.043 4.043 13 C -0.168 4.168 14 C 0.054 3.946 15 C -0.173 4.173 16 C 0.328 3.672 17 O -0.421 6.421 18 N -0.336 5.336 19 C 0.328 3.672 20 O -0.418 6.418 21 C -0.163 4.163 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.127 0.873 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.115 0.885 32 H 0.168 0.832 33 H 0.249 0.751 34 H 0.171 0.829 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.603 -13.966 4.099 14.995 hybrid contribution -0.697 1.538 0.215 1.702 sum 2.907 -12.428 4.314 13.473 Atomic orbital electron populations 1.70178 1.06710 1.25655 1.55778 1.25769 0.95890 1.01484 1.01697 0.85428 0.77563 0.79641 0.78366 1.19945 1.22679 1.20523 1.19511 0.92935 0.86068 1.40245 0.91140 1.44270 1.35661 1.02691 1.50538 1.21213 0.97764 0.85655 0.94642 1.21978 0.95043 1.00897 0.96503 1.20530 0.95783 0.93421 0.94555 1.22183 1.00346 0.96066 0.98220 1.20487 0.88138 0.97074 0.88942 1.22180 0.90906 1.06389 0.97818 1.21367 0.91820 0.72033 0.81961 1.90758 1.28682 1.48247 1.74431 1.44883 1.11602 1.64711 1.12449 1.21471 0.86045 0.72318 0.87404 1.90756 1.87814 1.45797 1.17415 1.22158 0.93220 1.03739 0.97140 0.94426 0.95851 0.92462 0.87288 0.91127 0.91656 0.93929 0.93832 0.98475 0.88549 0.83188 0.75117 0.82890 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.36 11.20 21.65 0.24 -55.12 16 2 C -0.05 -2.92 4.92 84.86 0.42 -2.51 16 3 Si 0.96 44.31 29.59 68.60 2.03 46.34 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.26 -13.46 9.58 84.03 0.81 -12.66 16 8 H 0.07 3.55 7.88 -2.91 -0.02 3.52 16 9 N -0.61 -27.94 2.99 -699.06 -2.09 -30.04 16 10 C 0.13 4.49 6.05 86.36 0.52 5.02 16 11 C -0.11 -2.40 4.94 30.74 0.15 -2.25 16 12 C -0.04 -1.00 0.51 -52.04 -0.03 -1.03 16 13 C -0.13 -4.33 4.54 30.63 0.14 -4.19 16 14 C 0.18 8.20 4.84 86.36 0.42 8.62 16 15 C -0.13 -3.25 4.10 29.86 0.12 -3.12 16 16 C 0.54 14.97 6.89 87.73 0.60 15.58 16 17 O -0.55 -19.61 17.87 -2.85 -0.05 -19.66 16 18 N -0.67 -16.25 4.77 -428.61 -2.05 -18.30 16 19 C 0.54 12.50 6.85 87.73 0.60 13.10 16 20 O -0.54 -15.88 17.87 -2.84 -0.05 -15.93 16 21 C -0.12 -2.14 4.85 29.87 0.14 -1.99 16 22 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 23 H 0.02 0.80 6.84 -2.39 -0.02 0.78 16 24 H 0.06 1.93 7.93 -2.39 -0.02 1.91 16 25 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.04 1.42 6.47 -2.38 -0.02 1.41 16 29 H 0.04 2.36 6.06 -2.39 -0.01 2.35 16 30 H 0.00 -0.14 6.63 -2.39 -0.02 -0.15 16 31 H 0.10 3.07 5.08 -2.39 -0.01 3.06 16 32 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.41 9.36 8.79 -92.71 -0.81 8.55 16 34 H 0.15 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -70.99 276.54 2.23 -68.75 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.30 Total: 9.38 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 3.90 Total: 14.56 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -3.90 Total: -103.46 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.10 Total: -35.59 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -70.99 2.23 -68.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966351.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.222 kcal (2) G-P(sol) polarization free energy of solvation -70.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds