Wall clock time and date at job start Mon Mar 30 2020 03:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99804 * 2 1 4 4 H 1.48496 * 109.47168 * 239.99986 * 3 2 1 5 5 H 1.48498 * 109.46727 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46680 * 120.00314 * 3 2 1 7 7 C 1.37878 * 120.00440 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00506 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47382 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47382 * 179.97438 * 10 9 7 12 12 C 1.34091 * 126.10078 * 85.02254 * 11 10 9 13 13 O 1.35112 * 107.27817 * 179.74349 * 12 11 10 14 14 C 1.34213 * 107.74651 * 0.38503 * 13 12 11 15 15 N 1.38157 * 125.71315 * 179.87184 * 14 13 12 16 16 C 1.47018 * 110.99916 * 359.69716 * 15 14 13 17 17 C 1.53095 * 109.29409 * 177.62695 * 16 15 14 18 18 O 1.43016 * 109.25799 * 56.82300 * 17 16 15 19 19 C 1.43015 * 113.74083 * 301.33083 * 18 17 16 20 20 C 1.47014 * 111.03977 * 236.03385 * 15 14 13 21 21 N 1.31050 * 108.57404 * 359.61054 * 14 13 12 22 22 H 0.96996 * 120.00431 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47045 * 60.00111 * 9 7 2 24 24 H 1.09006 * 109.47190 * 300.00803 * 9 7 2 25 25 H 1.09002 * 109.47413 * 60.00374 * 10 9 7 26 26 H 1.08997 * 109.47164 * 300.00476 * 10 9 7 27 27 H 1.07999 * 126.36292 * 0.02562 * 12 11 10 28 28 H 1.09002 * 109.50864 * 57.66931 * 16 15 14 29 29 H 1.09003 * 109.50425 * 297.58570 * 16 15 14 30 30 H 1.08994 * 109.50879 * 176.75852 * 17 16 15 31 31 H 1.09001 * 109.51139 * 296.84757 * 17 16 15 32 32 H 1.09007 * 109.50192 * 178.60261 * 19 18 17 33 33 H 1.08993 * 109.50392 * 298.68643 * 19 18 17 34 34 H 1.09006 * 109.46615 * 62.41411 * 20 15 14 35 35 H 1.08996 * 109.54154 * 302.33505 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 0.0001 12 6 1.0152 -5.6048 -1.0789 13 8 0.4138 -6.7340 -0.6446 14 6 0.5232 -6.7674 0.6927 15 7 0.0332 -7.7617 1.5173 16 6 -0.6477 -8.8053 0.7371 17 6 -1.1222 -9.9137 1.6805 18 8 -1.9697 -9.3482 2.6841 19 6 -1.3380 -8.3295 3.4641 20 6 -0.8657 -7.2050 2.5387 21 7 1.1776 -5.7019 1.0847 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8721 -3.6043 0.8895 26 1 2.8721 -3.6042 -0.8904 27 1 1.1005 -5.2788 -2.1050 28 1 0.0439 -9.2219 0.0048 29 1 -1.5060 -8.3732 0.2224 30 1 -1.6776 -10.6610 1.1139 31 1 -0.2596 -10.3829 2.1538 32 1 -2.0496 -7.9310 4.1873 33 1 -0.4823 -8.7522 3.9904 34 1 -1.7275 -6.7468 2.0534 35 1 -0.3339 -6.4530 3.1216 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260970415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:32 Heat of formation + Delta-G solvation = -42.348312 kcal Electronic energy + Delta-G solvation = -18246.393671 eV Core-core repulsion = 15245.276817 eV Total energy + Delta-G solvation = -3001.116854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.31223 -40.72376 -37.11802 -36.75479 -35.24691 -33.20262 -32.34458 -30.45270 -28.22100 -26.99249 -25.34920 -23.71548 -23.11887 -22.03257 -21.23836 -19.07735 -18.47937 -17.86719 -17.34738 -17.15793 -16.51795 -16.38692 -16.20521 -15.82987 -15.56577 -15.24576 -14.76115 -14.29919 -13.98287 -13.55641 -13.25473 -12.83396 -12.78386 -12.62646 -12.47500 -12.31331 -11.94228 -11.89347 -11.69882 -11.48370 -11.26885 -11.04047 -10.60839 -10.56151 -9.24731 -8.20345 -6.32710 0.40955 1.29380 1.41569 1.45243 1.52915 1.68134 2.29802 2.42249 2.81350 3.13055 3.51714 3.65374 3.77649 3.86579 3.95080 4.10984 4.12085 4.26731 4.45594 4.58469 4.67720 4.69688 4.74744 4.78201 4.83016 4.88409 4.94981 5.20900 5.31926 5.46887 5.62686 5.66888 5.80397 6.03117 6.19749 6.78051 6.83231 7.36970 8.91529 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.041241 B = 0.004059 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.777415 B = 6895.817531 C = 7253.995093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.040 3.960 10 C -0.022 4.022 11 C -0.006 4.006 12 C -0.083 4.083 13 O -0.226 6.226 14 C 0.352 3.648 15 N -0.421 5.421 16 C 0.009 3.991 17 C 0.069 3.931 18 O -0.395 6.395 19 C 0.073 3.927 20 C 0.020 3.980 21 N -0.515 5.515 22 H 0.264 0.736 23 H -0.003 1.003 24 H -0.022 1.022 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.247 0.753 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.135 0.865 31 H 0.077 0.923 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 -20.002 1.752 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.003 3.997 10 C -0.060 4.060 11 C -0.125 4.125 12 C -0.152 4.152 13 O -0.112 6.112 14 C 0.054 3.946 15 N -0.149 5.149 16 C -0.118 4.118 17 C -0.008 4.008 18 O -0.314 6.314 19 C -0.004 4.004 20 C -0.106 4.106 21 N -0.250 5.250 22 H 0.072 0.928 23 H 0.016 0.984 24 H -0.003 1.003 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.263 0.737 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.153 0.847 31 H 0.095 0.905 32 H 0.147 0.853 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.746 -20.085 2.605 20.328 hybrid contribution -0.229 1.480 -1.131 1.877 sum -1.975 -18.605 1.473 18.768 Atomic orbital electron populations 1.70109 1.07995 1.27906 1.51507 1.26012 0.95731 1.03509 0.94510 0.85446 0.78202 0.77727 0.79345 1.18658 1.20962 1.19289 1.21643 0.93809 0.91868 1.50884 0.91468 1.18880 0.93923 0.92331 0.94615 1.19943 0.96676 0.86874 1.02532 1.22065 1.03091 0.98895 0.88400 1.25073 1.03150 0.85028 1.01991 1.84490 1.62304 1.40772 1.23608 1.24039 0.98561 0.92940 0.79031 1.59449 1.37951 1.06633 1.10909 1.23149 0.98660 0.92599 0.97349 1.22886 0.95747 0.93439 0.88721 1.88006 1.40294 1.54082 1.49007 1.22818 0.99398 0.86121 0.92013 1.23165 0.94087 0.99839 0.93491 1.70629 1.17852 1.04825 1.31741 0.92765 0.98415 1.00326 0.92097 0.89124 0.73665 0.87322 0.92611 0.84712 0.90526 0.85256 0.90382 0.93465 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 13.29 21.45 0.28 -57.53 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.04 2.18 4.95 29.85 0.15 2.33 16 10 C -0.02 -0.98 5.69 29.85 0.17 -0.81 16 11 C -0.01 -0.23 6.36 41.17 0.26 0.03 16 12 C -0.08 -2.79 12.07 66.87 0.81 -1.98 16 13 O -0.23 -7.44 9.96 -9.77 -0.10 -7.54 16 14 C 0.35 12.13 7.44 179.08 1.33 13.46 16 15 N -0.42 -11.35 4.78 -818.26 -3.91 -15.26 16 16 C 0.01 0.18 5.04 86.31 0.43 0.61 16 17 C 0.07 0.99 7.01 72.01 0.50 1.49 16 18 O -0.40 -7.39 10.83 -148.98 -1.61 -9.00 16 19 C 0.07 1.28 7.01 72.01 0.50 1.78 16 20 C 0.02 0.50 5.55 86.31 0.48 0.98 16 21 N -0.52 -21.15 11.08 -301.93 -3.34 -24.49 16 22 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 23 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 24 H -0.02 -1.34 8.14 -2.38 -0.02 -1.36 16 25 H 0.06 2.72 8.14 -2.39 -0.02 2.71 16 26 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 27 H 0.25 6.33 8.06 -2.91 -0.02 6.30 16 28 H 0.11 1.91 8.06 -2.39 -0.02 1.89 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.13 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.09 2.63 7.95 -2.39 -0.02 2.61 16 Total: -1.00 -72.65 298.03 -0.25 -72.90 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.07 Total: 7.22 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 5.34 Total: -12.68 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -6.97 Total: -97.28 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -1.71 Total: -16.54 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -72.65 -0.25 -72.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260970415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.548 kcal (2) G-P(sol) polarization free energy of solvation -72.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds