Wall clock time and date at job start Mon Mar 30 2020 03:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35022 * 120.43788 * 2 1 4 4 C 1.50705 * 120.16140 * 359.95087 * 3 2 1 5 5 H 1.09002 * 109.46605 * 1.24651 * 4 3 2 6 6 C 1.53004 * 109.47003 * 121.24444 * 4 3 2 7 7 C 1.50695 * 109.47290 * 241.24805 * 4 3 2 8 8 H 1.08006 * 120.00274 * 359.97438 * 7 4 3 9 9 C 1.37875 * 119.99986 * 180.02562 * 7 4 3 10 10 N 1.31517 * 120.00053 * 359.97438 * 9 7 4 11 11 Si 1.86798 * 120.00257 * 180.02562 * 9 7 4 12 12 H 1.48504 * 109.47422 * 59.99223 * 11 9 7 13 13 H 1.48499 * 109.47504 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46833 * 299.99227 * 11 9 7 15 15 N 1.36837 * 119.68712 * 179.97438 * 3 2 1 16 16 C 1.46499 * 119.69383 * 179.97438 * 15 3 2 17 17 C 1.34543 * 120.61582 * 0.24436 * 15 3 2 18 18 O 1.21591 * 119.53505 * 179.74831 * 17 15 3 19 19 N 1.34603 * 120.93249 * 359.48839 * 17 15 3 20 20 C 1.46492 * 119.87092 * 180.25831 * 19 17 15 21 21 C 1.34845 * 120.26099 * 0.51485 * 19 17 15 22 22 O 1.21773 * 120.30512 * 179.71971 * 21 19 17 23 23 H 1.08997 * 109.47229 * 84.82916 * 1 2 3 24 24 H 1.09005 * 109.46606 * 204.82359 * 1 2 3 25 25 H 1.09000 * 109.47408 * 324.82010 * 1 2 3 26 26 H 1.08998 * 109.46579 * 180.02562 * 6 4 3 27 27 H 1.09003 * 109.46619 * 300.00143 * 6 4 3 28 28 H 1.08995 * 109.47009 * 59.99975 * 6 4 3 29 29 H 0.97003 * 120.00244 * 180.02562 * 10 9 7 30 30 H 1.08995 * 109.47422 * 90.44813 * 16 15 3 31 31 H 1.09003 * 109.46776 * 330.44460 * 16 15 3 32 32 H 1.08998 * 109.47023 * 210.45006 * 16 15 3 33 33 H 1.09002 * 109.47570 * 270.25627 * 20 19 17 34 34 H 1.09001 * 109.47409 * 30.25535 * 20 19 17 35 35 H 1.09001 * 109.47600 * 150.25749 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1910 1.1641 0.0000 4 6 1.4512 2.4771 -0.0011 5 1 0.3777 2.2892 0.0205 6 6 1.8518 3.2892 1.2322 7 6 1.8009 3.2497 -1.2468 8 1 2.4903 2.8320 -1.9657 9 6 1.2416 4.4903 -1.4683 10 7 0.4024 4.9991 -0.5928 11 14 1.6744 5.4477 -3.0127 12 1 1.2846 4.6595 -4.2095 13 1 0.9455 6.7415 -3.0138 14 1 3.1370 5.7032 -3.0431 15 7 3.5593 1.1462 0.0005 16 6 4.3016 2.4092 0.0000 17 6 4.2292 -0.0206 -0.0039 18 8 5.4451 -0.0135 -0.0080 19 7 3.5726 -1.1955 0.0014 20 6 4.3255 -2.4521 0.0021 21 6 2.2243 -1.2205 0.0008 22 8 1.6294 -2.2830 0.0004 23 1 -0.3633 0.0926 -1.0234 24 1 -0.3633 -0.9328 0.4315 25 1 -0.3634 0.8399 0.5921 26 1 1.3163 4.2386 1.2315 27 1 1.5988 2.7303 2.1331 28 1 2.9252 3.4770 1.2105 29 1 0.0086 5.8718 -0.7488 30 1 4.4922 2.7191 1.0274 31 1 3.7151 3.1750 -0.5077 32 1 5.2496 2.2732 -0.5204 33 1 4.5127 -2.7642 -1.0253 34 1 5.2754 -2.3063 0.5163 35 1 3.7486 -3.2211 0.5159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261009003.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:09 Heat of formation + Delta-G solvation = -51.657135 kcal Electronic energy + Delta-G solvation = -19656.069905 eV Core-core repulsion = 16654.549390 eV Total energy + Delta-G solvation = -3001.520515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.42793 -40.16202 -39.31080 -36.33393 -35.64801 -34.39711 -32.44204 -29.46370 -28.21572 -27.31194 -27.08270 -24.73269 -23.46545 -22.26082 -20.24395 -18.68252 -18.20975 -17.88433 -17.68704 -16.67369 -16.47682 -15.83625 -15.68083 -15.16685 -15.00087 -14.66827 -13.98902 -13.93670 -13.63720 -13.52704 -13.41215 -13.16532 -12.91464 -12.73157 -12.63904 -12.49487 -12.24935 -12.12016 -11.68888 -11.46837 -11.13938 -10.97707 -10.82460 -10.43513 -9.16421 -8.14559 -6.27975 0.13314 0.87691 1.00406 1.47669 1.51990 1.56305 2.02676 2.38219 2.48073 3.14165 3.47567 3.78892 4.17107 4.28148 4.37213 4.39079 4.48769 4.52816 4.57243 4.68359 4.82270 4.92613 4.98935 5.04287 5.07980 5.18470 5.25912 5.37917 5.45276 5.57058 5.78070 5.98639 6.14569 6.29917 6.41953 6.74033 6.86353 7.38570 8.88903 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.026456 B = 0.007875 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.097813 B = 3554.875723 C = 4002.617314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.320 4.320 3 C 0.249 3.751 4 C 0.065 3.935 5 H 0.060 0.940 6 C -0.145 4.145 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.038 3.962 10 N -0.898 5.898 11 Si 0.945 3.055 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.266 1.266 15 N -0.516 5.516 16 C 0.056 3.944 17 C 0.685 3.315 18 O -0.568 6.568 19 N -0.561 5.561 20 C 0.079 3.921 21 C 0.553 3.447 22 O -0.552 6.552 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.057 0.943 29 H 0.267 0.733 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.571 -4.881 1.927 6.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.328 4.328 3 C 0.142 3.858 4 C 0.046 3.954 5 H 0.078 0.922 6 C -0.203 4.203 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.164 4.164 10 N -0.535 5.535 11 Si 0.771 3.229 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.191 1.191 15 N -0.232 5.232 16 C -0.084 4.084 17 C 0.389 3.611 18 O -0.445 6.445 19 N -0.304 5.304 20 C -0.061 4.061 21 C 0.353 3.647 22 O -0.432 6.432 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.146 0.854 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.963 -5.276 1.974 7.508 hybrid contribution 0.076 0.512 -0.831 0.979 sum 5.040 -4.764 1.143 7.029 Atomic orbital electron populations 1.20189 0.87101 1.02440 1.02170 1.20271 0.99338 0.89483 1.23708 1.21609 0.81802 0.98865 0.83525 1.18275 0.95759 0.85237 0.96101 0.92198 1.22010 1.01687 1.01851 0.94748 1.20927 1.28294 1.02468 1.05078 0.92443 1.25431 0.94397 0.98017 0.98539 1.69934 1.29397 1.18373 1.35833 0.85801 0.78867 0.77878 0.80319 1.20566 1.21133 1.19100 1.44679 1.06021 1.07752 1.64796 1.22880 0.97780 0.83141 1.04611 1.16048 0.85571 0.80604 0.78879 1.90921 1.10994 1.86011 1.56565 1.46442 1.08708 1.08544 1.66723 1.22016 0.97185 0.82388 1.04553 1.17279 0.80666 0.90808 0.75936 1.90753 1.67862 1.32984 1.51639 0.92078 0.91439 0.90745 0.90627 0.95398 0.92460 0.92338 0.89864 0.85413 0.89748 0.90106 0.88432 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.14 9.09 71.24 0.65 -1.49 16 2 C -0.32 -12.22 5.89 -19.78 -0.12 -12.34 16 3 C 0.25 9.62 5.41 41.04 0.22 9.84 16 4 C 0.07 2.71 2.16 -12.28 -0.03 2.69 16 5 H 0.06 2.67 5.55 -2.39 -0.01 2.66 16 6 C -0.15 -5.70 8.70 71.98 0.63 -5.07 16 7 C -0.53 -23.96 6.07 25.60 0.16 -23.80 16 8 H 0.06 2.62 7.25 -2.91 -0.02 2.60 16 9 C 0.04 1.78 5.30 84.65 0.45 2.23 16 10 N -0.90 -43.74 11.32 21.45 0.24 -43.50 16 11 Si 0.95 37.85 29.54 68.60 2.03 39.88 16 12 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.29 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 15 N -0.52 -18.91 3.01 -665.66 -2.00 -20.92 16 16 C 0.06 1.83 8.28 127.77 1.06 2.89 16 17 C 0.69 25.21 8.12 179.18 1.45 26.66 16 18 O -0.57 -21.75 15.36 -4.00 -0.06 -21.81 16 19 N -0.56 -19.56 2.96 -806.45 -2.39 -21.95 16 20 C 0.08 2.12 10.12 127.77 1.29 3.41 16 21 C 0.55 21.13 7.43 85.05 0.63 21.76 16 22 O -0.55 -22.47 15.79 -4.58 -0.07 -22.54 16 23 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.07 2.24 7.52 -2.38 -0.02 2.23 16 25 H 0.07 2.52 6.36 -2.39 -0.02 2.51 16 26 H 0.08 3.33 6.07 -2.39 -0.01 3.31 16 27 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 2.05 4.44 -2.39 -0.01 2.04 16 29 H 0.27 12.59 8.31 -92.71 -0.77 11.82 16 30 H 0.08 2.44 7.01 -2.39 -0.02 2.42 16 31 H 0.13 4.63 3.94 -2.39 -0.01 4.62 16 32 H 0.08 2.62 7.38 -2.39 -0.02 2.60 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.10 2.39 7.40 -2.39 -0.02 2.38 16 35 H 0.10 2.44 7.42 -2.39 -0.02 2.43 16 Total: -1.00 -53.74 278.94 5.26 -48.48 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.12 Total: 15.59 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 6.40 Total: 26.77 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -4.15 Total: -86.36 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.13 Total: -44.35 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -53.74 5.26 -48.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009003.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.178 kcal (2) G-P(sol) polarization free energy of solvation -53.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds