Wall clock time and date at job start Mon Mar 30 2020 04:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46934 * 2 1 4 4 C 1.53002 * 109.47179 * 119.99939 * 2 1 3 5 5 C 1.50697 * 109.47013 * 65.00186 * 4 2 1 6 6 N 1.32987 * 126.13921 * 270.30385 * 5 4 2 7 7 C 1.31641 * 109.92043 * 180.17389 * 6 5 4 8 8 O 1.35127 * 125.33763 * 179.81906 * 7 6 5 9 9 N 1.34879 * 109.33275 * 359.56125 * 7 6 5 10 10 H 0.97000 * 126.52996 * 180.28835 * 9 7 6 11 11 C 1.38325 * 126.13811 * 89.99765 * 5 4 2 12 12 C 1.40947 * 126.95639 * 359.97438 * 11 5 4 13 13 O 1.21494 * 119.99749 * 0.02562 * 12 11 5 14 14 C 1.50692 * 120.00299 * 180.02562 * 12 11 5 15 15 C 1.50700 * 109.47498 * 180.02562 * 14 12 11 16 16 H 1.07996 * 119.99458 * 359.97438 * 15 14 12 17 17 C 1.37874 * 120.00186 * 179.97438 * 15 14 12 18 18 N 1.31522 * 119.99961 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00168 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46912 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46939 * 120.00132 * 19 17 15 22 22 H 1.48496 * 109.47700 * 240.00515 * 19 17 15 23 23 H 1.08992 * 109.47208 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46982 * 300.00038 * 1 2 3 25 25 H 1.09001 * 109.47130 * 59.99867 * 1 2 3 26 26 H 1.09002 * 109.46982 * 239.99962 * 2 1 3 27 27 H 1.09001 * 109.46930 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47321 * 300.00016 * 3 2 1 29 29 H 1.08994 * 109.47169 * 60.00416 * 3 2 1 30 30 H 1.08994 * 109.47257 * 304.99867 * 4 2 1 31 31 H 1.09000 * 109.47012 * 185.00113 * 4 2 1 32 32 H 0.96700 * 114.00294 * 269.70053 * 8 7 6 33 33 H 1.09006 * 109.46754 * 300.00587 * 14 12 11 34 34 H 1.08995 * 109.47031 * 59.99923 * 14 12 11 35 35 H 0.97003 * 119.99592 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 -2.1733 1.1889 6 7 0.5137 -2.6973 1.6604 7 6 0.4960 -3.9951 1.4409 8 8 -0.5018 -4.8343 1.7959 9 7 1.6274 -4.3552 0.8010 10 1 1.8695 -5.2501 0.5156 11 6 2.3801 -3.1994 0.6278 12 6 3.6406 -3.0942 0.0060 13 8 4.1888 -2.0131 -0.0768 14 6 4.3084 -4.3226 -0.5562 15 6 5.6350 -3.9410 -1.1608 16 1 5.9616 -2.9119 -1.1404 17 6 6.4316 -4.9058 -1.7400 18 7 6.0335 -6.1591 -1.7653 19 14 8.0756 -4.4328 -2.4901 20 1 8.2889 -2.9715 -2.3338 21 1 9.1650 -5.1684 -1.7990 22 1 8.0803 -4.7825 -3.9333 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2617 2.1369 31 1 3.1263 -0.6443 1.2952 32 1 -0.3973 -5.2193 2.6768 33 1 4.4683 -5.0469 0.2426 34 1 3.6720 -4.7629 -1.3237 35 1 6.5939 -6.8378 -2.1731 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261159478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:14 Heat of formation + Delta-G solvation = -42.340949 kcal Electronic energy + Delta-G solvation = -18591.165625 eV Core-core repulsion = 15590.049090 eV Total energy + Delta-G solvation = -3001.116534 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.03533 -38.37913 -37.26151 -36.06308 -33.13440 -32.59953 -30.01047 -28.98439 -26.89683 -26.55336 -23.98178 -22.45605 -20.78105 -20.15494 -19.13346 -18.51157 -16.89937 -16.37379 -15.77502 -15.05799 -14.68241 -14.60698 -14.42453 -13.78621 -13.71782 -13.26155 -12.96287 -12.32742 -12.15256 -12.10446 -11.98786 -11.53908 -11.30516 -10.95426 -10.84445 -10.73940 -10.70660 -10.39257 -10.12616 -10.02037 -9.82247 -9.37637 -8.60316 -8.53084 -8.10076 -6.15144 -4.15503 1.27748 2.56698 2.88977 3.27687 3.35367 3.43194 3.66647 3.95683 4.38826 4.90880 5.08173 5.14817 5.19675 5.23672 5.28920 5.51450 5.78957 5.83012 5.95014 5.97660 6.04667 6.17378 6.27821 6.30940 6.50613 6.59217 6.62807 6.65717 6.83761 7.03027 7.16304 7.66809 7.85467 7.94647 8.12333 8.54495 8.94775 9.50398 10.97263 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.006438 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.054464 B = 4348.240809 C = 5532.283515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.143 4.143 4 C -0.038 4.038 5 C 0.104 3.896 6 N -0.489 5.489 7 C 0.393 3.607 8 O -0.444 6.444 9 N -0.538 5.538 10 H 0.429 0.571 11 C -0.089 4.089 12 C 0.416 3.584 13 O -0.447 6.447 14 C -0.025 4.025 15 C -0.513 4.513 16 H 0.076 0.924 17 C 0.056 3.944 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.403 0.597 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 5.273 6.763 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.200 4.200 4 C -0.076 4.076 5 C -0.031 4.031 6 N -0.220 5.220 7 C 0.092 3.908 8 O -0.245 6.245 9 N -0.155 5.155 10 H 0.269 0.731 11 C -0.203 4.203 12 C 0.294 3.706 13 O -0.322 6.322 14 C -0.062 4.062 15 C -0.551 4.551 16 H 0.094 0.906 17 C -0.145 4.145 18 N -0.541 5.541 19 Si 0.727 3.273 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.260 0.740 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.223 6.158 6.529 14.370 hybrid contribution 1.472 -1.493 -0.459 2.146 sum -9.750 4.665 6.069 12.396 Atomic orbital electron populations 1.21839 0.95308 1.02107 1.00798 1.20990 0.95577 0.95899 0.98122 1.21793 1.01484 0.95553 1.01202 1.20218 1.02502 0.86474 0.98416 1.21369 0.89041 0.96027 0.96688 1.70080 1.22564 1.04324 1.25003 1.20197 0.83655 0.87609 0.99326 1.84800 1.39700 1.60384 1.39624 1.43751 1.15444 1.11548 1.44807 0.73102 1.21364 0.99081 0.86016 1.13868 1.20750 0.81862 0.92839 0.75106 1.90457 1.63266 1.30376 1.48131 1.19583 0.97525 0.91670 0.97443 1.21179 1.01630 0.95636 1.36616 0.90552 1.25017 0.98670 0.94832 0.96007 1.69955 1.38069 1.00728 1.45331 0.86393 0.83182 0.78979 0.78720 1.19357 1.20970 1.20960 0.92336 0.92901 0.93488 0.90915 0.92197 0.92914 0.92965 0.90753 0.88436 0.74031 0.93381 0.93343 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.00 37.16 0.33 -1.59 16 2 C -0.09 -1.26 2.91 -90.62 -0.26 -1.52 16 3 C -0.14 -1.76 9.19 37.16 0.34 -1.42 16 4 C -0.04 -0.59 4.66 -27.88 -0.13 -0.71 16 5 C 0.10 1.78 5.65 -82.06 -0.46 1.32 16 6 N -0.49 -8.00 10.50 -10.52 -0.11 -8.11 16 7 C 0.39 5.72 9.40 -89.56 -0.84 4.88 16 8 O -0.44 -4.96 13.62 -17.08 -0.23 -5.19 16 9 N -0.54 -8.17 6.10 -11.94 -0.07 -8.24 16 10 H 0.43 5.69 8.78 -40.82 -0.36 5.33 16 11 C -0.09 -1.63 6.83 -83.55 -0.57 -2.20 16 12 C 0.42 8.98 6.92 -33.29 -0.23 8.74 16 13 O -0.45 -10.41 13.82 5.37 0.07 -10.33 16 14 C -0.03 -0.62 5.03 -29.04 -0.15 -0.76 16 15 C -0.51 -14.28 8.92 -34.44 -0.31 -14.59 16 16 H 0.08 2.19 6.75 -52.49 -0.35 1.83 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -25.72 13.29 55.43 0.74 -24.99 16 19 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.06 0.89 6.82 -51.93 -0.35 0.54 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.63 6.46 -51.93 -0.34 1.29 16 32 H 0.40 2.26 9.06 45.56 0.41 2.68 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 301.63 15.07 4.55 4.55 Total: -1.00 -32.06 301.63 -6.39 -38.45 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -3.93 Total: 3.77 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.37 Total: -6.41 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.55 Total: -41.34 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.16 Total: -15.52 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.06 -6.39 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261159478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.896 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds