Wall clock time and date at job start Mon Mar 30 2020 04:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46934 * 2 1 4 4 C 1.53002 * 109.47179 * 119.99939 * 2 1 3 5 5 C 1.50697 * 109.47013 * 65.00186 * 4 2 1 6 6 N 1.32987 * 126.13921 * 270.30385 * 5 4 2 7 7 C 1.31641 * 109.92043 * 180.17389 * 6 5 4 8 8 O 1.35127 * 125.33763 * 179.81906 * 7 6 5 9 9 N 1.34879 * 109.33275 * 359.56125 * 7 6 5 10 10 H 0.97000 * 126.52996 * 180.28835 * 9 7 6 11 11 C 1.38325 * 126.13811 * 89.99765 * 5 4 2 12 12 C 1.40947 * 126.95639 * 359.97438 * 11 5 4 13 13 O 1.21494 * 119.99749 * 0.02562 * 12 11 5 14 14 C 1.50692 * 120.00299 * 180.02562 * 12 11 5 15 15 C 1.50700 * 109.47498 * 180.02562 * 14 12 11 16 16 H 1.07996 * 119.99458 * 359.97438 * 15 14 12 17 17 C 1.37874 * 120.00186 * 179.97438 * 15 14 12 18 18 N 1.31522 * 119.99961 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00168 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46912 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46939 * 120.00132 * 19 17 15 22 22 H 1.48496 * 109.47700 * 240.00515 * 19 17 15 23 23 H 1.08992 * 109.47208 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46982 * 300.00038 * 1 2 3 25 25 H 1.09001 * 109.47130 * 59.99867 * 1 2 3 26 26 H 1.09002 * 109.46982 * 239.99962 * 2 1 3 27 27 H 1.09001 * 109.46930 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47321 * 300.00016 * 3 2 1 29 29 H 1.08994 * 109.47169 * 60.00416 * 3 2 1 30 30 H 1.08994 * 109.47257 * 304.99867 * 4 2 1 31 31 H 1.09000 * 109.47012 * 185.00113 * 4 2 1 32 32 H 0.96700 * 114.00294 * 269.70053 * 8 7 6 33 33 H 1.09006 * 109.46754 * 300.00587 * 14 12 11 34 34 H 1.08995 * 109.47031 * 59.99923 * 14 12 11 35 35 H 0.97003 * 119.99592 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 -2.1733 1.1889 6 7 0.5137 -2.6973 1.6604 7 6 0.4960 -3.9951 1.4409 8 8 -0.5018 -4.8343 1.7959 9 7 1.6274 -4.3552 0.8010 10 1 1.8695 -5.2501 0.5156 11 6 2.3801 -3.1994 0.6278 12 6 3.6406 -3.0942 0.0060 13 8 4.1888 -2.0131 -0.0768 14 6 4.3084 -4.3226 -0.5562 15 6 5.6350 -3.9410 -1.1608 16 1 5.9616 -2.9119 -1.1404 17 6 6.4316 -4.9058 -1.7400 18 7 6.0335 -6.1591 -1.7653 19 14 8.0756 -4.4328 -2.4901 20 1 8.2889 -2.9715 -2.3338 21 1 9.1650 -5.1684 -1.7990 22 1 8.0803 -4.7825 -3.9333 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2617 2.1369 31 1 3.1263 -0.6443 1.2952 32 1 -0.3973 -5.2193 2.6768 33 1 4.4683 -5.0469 0.2426 34 1 3.6720 -4.7629 -1.3237 35 1 6.5939 -6.8378 -2.1731 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261159478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:14 Heat of formation + Delta-G solvation = -66.602726 kcal Electronic energy + Delta-G solvation = -18592.217694 eV Core-core repulsion = 15590.049090 eV Total energy + Delta-G solvation = -3002.168604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.32762 -39.96093 -38.41295 -37.19648 -35.15497 -33.96398 -31.56920 -30.65712 -27.98702 -27.92394 -25.78759 -23.83625 -22.09136 -21.46558 -20.35881 -19.80459 -18.53326 -18.12387 -17.08869 -16.65191 -16.45835 -15.94868 -15.75124 -15.19331 -15.00522 -14.86284 -14.25772 -14.17252 -13.29718 -13.26979 -13.22720 -12.97755 -12.85432 -12.63730 -12.60467 -12.11948 -12.03835 -11.84073 -11.54326 -11.46140 -11.35094 -11.06418 -10.65530 -10.30232 -9.44363 -8.28287 -6.35637 -0.11967 1.37427 1.38256 1.39884 1.54019 1.61406 2.09753 2.38955 2.78933 3.07750 3.56116 3.74694 3.86494 4.06544 4.16066 4.38133 4.49328 4.74787 4.78562 4.86910 4.87683 4.99714 5.08063 5.09281 5.13449 5.18433 5.26643 5.43917 5.51525 5.53670 5.69624 5.82770 6.07666 6.62741 6.68382 6.76213 6.85337 7.33852 8.83918 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.006438 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.054464 B = 4348.240809 C = 5532.283515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 C -0.138 4.138 4 C -0.039 4.039 5 C 0.120 3.880 6 N -0.504 5.504 7 C 0.424 3.576 8 O -0.439 6.439 9 N -0.534 5.534 10 H 0.436 0.564 11 C -0.126 4.126 12 C 0.424 3.576 13 O -0.475 6.475 14 C -0.021 4.021 15 C -0.538 4.538 16 H 0.061 0.939 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.961 3.039 20 H -0.271 1.271 21 H -0.274 1.274 22 H -0.275 1.275 23 H 0.038 0.962 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.432 0.568 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 5.647 7.430 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 C -0.195 4.195 4 C -0.078 4.078 5 C -0.016 4.016 6 N -0.236 5.236 7 C 0.122 3.878 8 O -0.244 6.244 9 N -0.152 5.152 10 H 0.278 0.722 11 C -0.239 4.239 12 C 0.305 3.695 13 O -0.353 6.353 14 C -0.058 4.058 15 C -0.576 4.576 16 H 0.079 0.921 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.786 3.214 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.200 1.200 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.294 0.706 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.306 6.486 7.219 15.672 hybrid contribution 1.654 -1.688 -0.596 2.437 sum -10.653 4.798 6.623 13.430 Atomic orbital electron populations 1.21762 0.94125 1.01199 1.02164 1.20962 0.96469 0.96816 0.96225 1.21756 1.00802 0.94225 1.02763 1.20289 1.01677 0.86010 0.99794 1.21642 0.88757 0.96426 0.94778 1.70161 1.22239 1.05117 1.26042 1.20336 0.83032 0.87682 0.96703 1.84773 1.38026 1.59681 1.41917 1.43663 1.15366 1.11242 1.44907 0.72228 1.20736 0.98817 0.87744 1.16571 1.20380 0.82932 0.91364 0.74809 1.90437 1.64423 1.30683 1.49720 1.19445 0.96407 0.92940 0.96974 1.21439 1.03492 0.95133 1.37533 0.92111 1.25790 1.02015 0.94795 0.96275 1.70029 1.39332 1.01441 1.45791 0.85442 0.79174 0.78512 0.78245 1.19543 1.19900 1.20032 0.94293 0.91398 0.92238 0.93940 0.93283 0.91779 0.90953 0.88698 0.90074 0.70554 0.93903 0.94252 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.00 71.98 0.65 -2.76 16 2 C -0.09 -2.43 2.91 -10.79 -0.03 -2.46 16 3 C -0.14 -3.22 9.19 71.98 0.66 -2.56 16 4 C -0.04 -1.20 4.66 29.85 0.14 -1.06 16 5 C 0.12 4.06 5.65 42.40 0.24 4.30 16 6 N -0.50 -15.60 10.50 -300.67 -3.16 -18.75 16 7 C 0.42 11.46 9.40 179.98 1.69 13.15 16 8 O -0.44 -8.36 13.62 -84.03 -1.14 -9.50 16 9 N -0.53 -15.79 6.10 -303.48 -1.85 -17.64 16 10 H 0.44 11.33 8.78 -92.71 -0.81 10.52 16 11 C -0.13 -4.63 6.83 38.69 0.26 -4.37 16 12 C 0.42 18.95 6.92 26.35 0.18 19.13 16 13 O -0.48 -23.04 13.82 -3.70 -0.05 -23.09 16 14 C -0.02 -1.04 5.03 29.10 0.15 -0.89 16 15 C -0.54 -30.81 8.92 25.60 0.23 -30.58 16 16 H 0.06 3.60 6.75 -2.91 -0.02 3.59 16 17 C 0.01 0.55 5.46 84.65 0.46 1.01 16 18 N -0.93 -53.24 13.29 21.45 0.28 -52.96 16 19 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 H 0.04 1.13 6.82 -2.39 -0.02 1.11 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.08 2.75 6.46 -2.39 -0.02 2.74 16 32 H 0.43 3.17 9.06 -74.06 -0.67 2.50 16 33 H 0.04 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -68.95 301.63 0.38 -68.57 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -0.36 Total: 14.03 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 4.63 Total: -7.10 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -4.72 Total: -89.35 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -1.20 Total: -32.59 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -68.95 0.38 -68.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261159478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.965 kcal (2) G-P(sol) polarization free energy of solvation -68.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds