Wall clock time and date at job start Mon Mar 30 2020 03:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.86654 * 2 1 4 4 C 1.54098 * 109.88004 * 238.83532 * 2 1 3 5 5 C 1.55231 * 104.22792 * 242.61780 * 4 2 1 6 6 C 1.54996 * 101.90256 * 20.84633 * 5 4 2 7 7 H 1.09006 * 110.61478 * 81.56364 * 6 5 4 8 8 C 1.50698 * 110.62275 * 204.41190 * 6 5 4 9 9 O 1.21287 * 120.00104 * 112.82053 * 8 6 5 10 10 N 1.34773 * 119.99561 * 292.82389 * 8 6 5 11 11 C 1.37099 * 120.00056 * 180.02562 * 10 8 6 12 12 H 1.08001 * 119.99730 * 7.98792 * 11 10 8 13 13 C 1.38946 * 120.00431 * 187.99321 * 11 10 8 14 14 N 1.31415 * 119.99815 * 24.43301 * 13 11 10 15 15 Si 1.86800 * 120.00478 * 204.43038 * 13 11 10 16 16 H 1.48497 * 109.47052 * 89.99964 * 15 13 11 17 17 H 1.48498 * 109.47174 * 210.00089 * 15 13 11 18 18 H 1.48500 * 109.46774 * 330.00234 * 15 13 11 19 19 C 1.46508 * 120.00259 * 359.97438 * 10 8 6 20 20 C 1.47192 * 109.46809 * 91.91589 * 19 10 8 21 21 N 5.75941 * 120.47629 * 199.59007 * 2 1 3 22 22 O 1.43741 * 109.87463 * 121.00152 * 2 1 3 23 23 H 1.08994 * 109.47384 * 300.44807 * 1 2 3 24 24 H 1.08998 * 109.47310 * 60.45716 * 1 2 3 25 25 H 1.09010 * 109.46941 * 180.44924 * 1 2 3 26 26 H 1.08996 * 109.46773 * 179.55257 * 3 2 1 27 27 H 1.09000 * 109.46739 * 299.54559 * 3 2 1 28 28 H 1.08996 * 109.47200 * 59.54885 * 3 2 1 29 29 H 1.09005 * 110.48862 * 1.28134 * 4 2 1 30 30 H 1.09003 * 110.48719 * 123.79699 * 4 2 1 31 31 H 1.09006 * 110.91806 * 262.75103 * 5 4 2 32 32 H 1.08997 * 111.07979 * 139.01689 * 5 4 2 33 33 H 0.97002 * 120.00140 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.46872 * 211.91385 * 19 10 8 35 35 H 1.08996 * 109.46972 * 331.91853 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0540 -0.7499 -1.2400 5 6 2.8346 -1.9571 -0.6542 6 6 2.2281 -2.0703 0.7677 7 1 1.2813 -2.6098 0.7392 8 6 3.1949 -2.7473 1.7047 9 8 3.6946 -2.1222 2.6161 10 7 3.5043 -4.0473 1.5299 11 6 4.3834 -4.6634 2.3826 12 1 4.7283 -4.1486 3.2672 13 6 4.8308 -5.9501 2.1089 14 7 4.8290 -6.3973 0.8732 15 14 5.4349 -7.0442 3.4972 16 1 4.2958 -7.8240 4.0443 17 1 6.4691 -7.9756 2.9792 18 1 6.0202 -6.2026 4.5716 19 6 2.9003 -4.8025 0.4293 20 6 3.7749 -4.7315 -0.7524 21 7 4.4511 -4.6764 -1.6643 22 8 2.0187 -0.6963 1.1587 23 1 -0.3634 0.5207 0.8859 24 1 -0.3634 0.5067 -0.8940 25 1 -0.3633 -1.0277 0.0081 26 1 3.1399 1.4314 0.0080 27 1 1.6968 1.9528 -0.8941 28 1 1.6836 1.9576 0.8859 29 1 1.2238 -1.0957 -1.8559 30 1 2.7179 -0.1096 -1.8209 31 1 3.9024 -1.7436 -0.6057 32 1 2.6462 -2.8628 -1.2307 33 1 5.1410 -7.2957 0.6820 34 1 2.7767 -5.8436 0.7279 35 1 1.9269 -4.3760 0.1871 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278391405.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:26 Heat of formation + Delta-G solvation = -59.434330 kcal Electronic energy + Delta-G solvation = -19380.204951 eV Core-core repulsion = 16378.347192 eV Total energy + Delta-G solvation = -3001.857759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.47279 -39.80319 -37.64879 -36.15359 -34.15774 -33.86304 -32.67649 -29.31338 -28.32588 -28.08693 -26.05037 -23.28505 -21.25965 -20.82515 -19.86101 -18.43600 -18.02744 -17.06432 -16.88819 -16.15664 -15.98925 -15.51165 -15.18048 -14.92871 -14.65554 -14.26020 -14.19582 -13.77169 -13.43067 -13.26079 -13.15688 -12.99225 -12.93113 -12.67257 -12.58158 -12.31965 -12.27635 -12.17640 -12.11891 -11.67838 -11.51219 -11.14670 -10.75976 -10.26715 -10.04900 -8.46728 -5.96767 1.35972 1.46806 1.56751 1.74725 1.96464 2.25856 2.32765 2.62969 2.93816 3.24722 3.54440 3.56801 3.79490 3.85495 4.02378 4.07244 4.17557 4.31545 4.49001 4.55178 4.73178 4.80960 4.87097 4.89272 4.92150 5.00212 5.04203 5.13091 5.31335 5.45210 5.45425 5.85840 6.10436 6.37998 7.02563 7.07095 7.28465 7.85615 8.56056 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.006864 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.702821 B = 4078.205133 C = 4595.990829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.077 3.923 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.140 4.140 6 C 0.075 3.925 7 H 0.120 0.880 8 C 0.446 3.554 9 O -0.612 6.612 10 N -0.448 5.448 11 C -0.348 4.348 12 H 0.080 0.920 13 C 0.011 3.989 14 N -0.886 5.886 15 Si 0.988 3.012 16 H -0.257 1.257 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.217 3.783 20 C 0.263 3.737 21 N -0.503 5.503 22 O -0.373 6.373 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.278 0.722 34 H 0.129 0.871 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.985 5.558 -5.613 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.039 3.961 3 C -0.199 4.199 4 C -0.171 4.171 5 C -0.179 4.179 6 C 0.014 3.986 7 H 0.137 0.863 8 C 0.236 3.764 9 O -0.497 6.497 10 N -0.168 5.168 11 C -0.475 4.475 12 H 0.098 0.902 13 C -0.192 4.192 14 N -0.524 5.524 15 Si 0.812 3.188 16 H -0.182 1.182 17 H -0.208 1.208 18 H -0.206 1.206 19 C 0.091 3.909 20 C -0.054 4.054 21 N -0.184 5.184 22 O -0.292 6.292 23 H 0.076 0.924 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.652 5.865 -6.392 13.738 hybrid contribution 0.838 -0.801 1.045 1.561 sum -9.814 5.064 -5.347 12.270 Atomic orbital electron populations 1.22236 0.92465 1.03222 1.03438 1.22550 0.95475 0.93510 0.84604 1.21923 1.00723 0.93737 1.03468 1.23133 1.00963 0.95503 0.97495 1.23198 0.99492 1.00907 0.94271 1.22879 0.97872 0.85362 0.92480 0.86265 1.20640 0.86456 0.81667 0.87668 1.90516 1.58181 1.64467 1.36563 1.43774 1.39680 1.07721 1.25647 1.19633 1.25327 0.98294 1.04255 0.90189 1.25830 0.96284 0.98137 0.98907 1.69908 1.45272 1.19172 1.18055 0.85014 0.78277 0.77569 0.77951 1.18179 1.20794 1.20594 1.19243 0.91559 1.01406 0.78734 1.29431 0.93216 0.90012 0.92761 1.80927 1.09700 1.12086 1.15721 1.89022 1.86359 1.19444 1.34395 0.92380 0.88878 0.91637 0.93870 0.88258 0.92282 0.87089 0.89596 0.94005 0.88839 0.91131 0.85370 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 8.61 71.98 0.62 -2.32 16 2 C 0.08 1.99 1.19 -10.42 -0.01 1.98 16 3 C -0.14 -3.27 8.68 71.98 0.62 -2.64 16 4 C -0.13 -3.11 6.29 31.73 0.20 -2.91 16 5 C -0.14 -4.50 5.20 32.04 0.17 -4.33 16 6 C 0.07 2.69 2.73 30.53 0.08 2.77 16 7 H 0.12 3.34 7.20 -2.38 -0.02 3.32 16 8 C 0.45 21.51 7.06 87.66 0.62 22.13 16 9 O -0.61 -35.87 16.16 15.18 0.25 -35.62 16 10 N -0.45 -21.24 2.59 -645.43 -1.67 -22.91 16 11 C -0.35 -18.57 9.43 84.04 0.79 -17.78 16 12 H 0.08 4.71 7.30 -2.91 -0.02 4.69 16 13 C 0.01 0.54 4.92 84.92 0.42 0.96 16 14 N -0.89 -43.24 9.02 21.66 0.20 -43.04 16 15 Si 0.99 40.14 29.62 68.60 2.03 42.17 16 16 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 17 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 19 C 0.22 8.21 4.75 84.57 0.40 8.61 16 20 C 0.26 11.08 10.37 89.43 0.93 12.01 16 21 N -0.50 -22.94 18.54 20.01 0.37 -22.56 16 22 O -0.37 -13.99 10.14 -130.75 -1.33 -15.31 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.16 8.13 -2.38 -0.02 1.14 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.11 1.86 7.70 -2.38 -0.02 1.84 16 30 H 0.09 1.86 7.70 -2.39 -0.02 1.85 16 31 H 0.04 1.64 8.05 -2.38 -0.02 1.62 16 32 H 0.09 2.78 5.35 -2.39 -0.01 2.77 16 33 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 34 H 0.13 4.94 6.39 -2.39 -0.02 4.92 16 35 H 0.13 3.57 5.92 -2.39 -0.01 3.56 16 Total: -1.00 -71.11 289.35 5.79 -65.33 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.10 Total: 13.48 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 4.84 Total: 18.48 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -1.10 Total: -88.52 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -1.08 Total: -50.94 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -71.11 5.79 -65.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278391405.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.892 kcal (2) G-P(sol) polarization free energy of solvation -71.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds