Wall clock time and date at job start Mon Mar 30 2020 03:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47340 * 325.03194 * 3 2 1 5 5 C 1.37098 * 120.00299 * 264.13841 * 4 3 2 6 6 H 1.07995 * 120.00283 * 197.43266 * 5 4 3 7 7 C 1.38955 * 119.99603 * 17.44416 * 5 4 3 8 8 N 1.31410 * 120.00243 * 21.51150 * 7 5 4 9 9 Si 1.86807 * 119.99636 * 201.51926 * 7 5 4 10 10 H 1.48499 * 109.47140 * 59.99490 * 9 7 5 11 11 H 1.48493 * 109.46884 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46941 * 299.99863 * 9 7 5 13 13 C 1.34773 * 119.99703 * 84.14290 * 4 3 2 14 14 O 1.21297 * 120.00143 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00384 * 0.02562 * 13 4 3 16 16 O 1.42896 * 109.47302 * 180.02562 * 15 13 4 17 17 C 1.42905 * 113.99780 * 179.97438 * 16 15 13 18 18 C 1.52998 * 113.01191 * 311.63449 * 17 16 15 19 19 C 1.53940 * 113.73079 * 179.97438 * 17 16 15 20 20 N 1.47952 * 86.18101 * 269.36363 * 19 17 16 21 21 C 1.47966 * 90.76570 * 335.30917 * 20 19 17 22 22 H 4.40641 * 5.51356 * 179.97438 * 4 1 2 23 23 H 1.09009 * 109.47098 * 205.03577 * 3 2 1 24 24 H 1.09003 * 109.47365 * 85.03735 * 3 2 1 25 25 H 0.96997 * 119.99985 * 179.97438 * 8 7 5 26 26 H 1.09000 * 109.47367 * 59.99851 * 15 13 4 27 27 H 1.09004 * 109.46538 * 299.99971 * 15 13 4 28 28 H 1.09001 * 109.47241 * 288.36275 * 18 17 16 29 29 H 1.09001 * 109.47090 * 48.36188 * 18 17 16 30 30 H 1.09001 * 109.47196 * 168.36642 * 18 17 16 31 31 H 1.09000 * 113.75976 * 23.68396 * 19 17 16 32 32 H 1.09002 * 113.75671 * 155.04455 * 19 17 16 33 33 H 1.00896 * 111.00560 * 88.20283 * 20 19 17 34 34 H 1.08993 * 113.75887 * 270.37555 * 21 20 19 35 35 H 1.09000 * 113.85898 * 139.01956 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.1310 0.7916 5 6 3.4776 -0.9504 2.1067 6 1 4.0904 -1.6832 2.6105 7 6 3.0363 0.1753 2.7914 8 7 1.9847 0.8357 2.3614 9 14 3.9382 0.7500 4.3231 10 1 5.3467 1.0693 3.9776 11 1 3.2739 1.9636 4.8624 12 1 3.9112 -0.3258 5.3463 13 6 3.2477 -2.3495 0.2269 14 8 3.6520 -3.2866 0.8824 15 6 2.8716 -2.5479 -1.2188 16 8 3.0766 -3.9148 -1.5811 17 6 2.7476 -4.2116 -2.9398 18 6 1.3800 -3.6670 -3.3566 19 6 2.9713 -5.6855 -3.3236 20 7 4.3361 -5.2727 -3.7183 21 6 3.8745 -3.8838 -3.9359 22 1 -1.0499 -0.0001 0.0003 23 1 3.0089 0.9320 0.4349 24 1 3.0094 -0.0881 -1.0238 25 1 1.6765 1.6213 2.8396 26 1 3.4919 -1.9082 -1.8467 27 1 1.8224 -2.2883 -1.3601 28 1 0.5946 -4.2498 -2.8752 29 1 1.2963 -2.6236 -3.0527 30 1 1.2745 -3.7398 -4.4391 31 1 2.9474 -6.3689 -2.4747 32 1 2.3551 -6.0204 -4.1580 33 1 4.9703 -5.3244 -2.9353 34 1 3.5225 -3.6918 -4.9494 35 1 4.5712 -3.1263 -3.5771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300825595.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:17 Heat of formation + Delta-G solvation = 35.014138 kcal Electronic energy + Delta-G solvation = -18890.577281 eV Core-core repulsion = 15892.815115 eV Total energy + Delta-G solvation = -2997.762166 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23082 -38.60498 -35.95597 -34.99733 -32.20386 -31.29340 -30.15713 -28.01324 -26.42233 -26.05175 -24.41647 -23.62719 -19.95944 -19.20578 -17.96019 -16.95627 -16.66451 -16.07861 -15.57831 -15.33112 -14.84649 -14.31039 -14.18802 -14.01158 -13.46644 -13.34172 -12.75392 -12.43120 -12.31190 -12.22104 -11.85258 -11.72202 -11.62477 -11.17319 -11.02022 -10.58456 -10.39052 -10.37073 -9.57665 -9.44424 -9.29694 -8.97339 -8.53165 -8.40794 -7.93327 -6.38559 -3.91347 3.14324 3.21750 3.23331 3.40015 3.65108 3.85320 3.95405 4.03410 4.16944 4.36974 4.88822 4.97729 5.03947 5.19889 5.34854 5.41614 5.48408 5.53023 5.56524 5.63935 5.68882 5.80629 5.85310 5.93857 5.98377 6.15495 6.20081 6.65804 6.94008 7.20622 7.36982 7.51929 7.99210 8.37413 8.71739 9.07579 9.27745 9.83062 10.62430 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.032360 B = 0.005908 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.067108 B = 4738.533374 C = 5306.671987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.118 4.118 3 C 0.230 3.770 4 N -0.438 5.438 5 C -0.316 4.316 6 H 0.105 0.895 7 C 0.032 3.968 8 N -0.863 5.863 9 Si 0.924 3.076 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.452 3.548 14 O -0.564 6.564 15 C 0.051 3.949 16 O -0.335 6.335 17 C 0.039 3.961 18 C -0.176 4.176 19 C 0.034 3.966 20 N -0.657 5.657 21 C -0.006 4.006 22 H 0.200 0.800 23 H 0.113 0.887 24 H 0.060 0.940 25 H 0.270 0.730 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.346 0.654 34 H 0.101 0.899 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.189 -2.050 -11.614 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.119 4.119 3 C 0.106 3.894 4 N -0.158 5.158 5 C -0.443 4.443 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.501 5.501 9 Si 0.750 3.250 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.239 3.761 14 O -0.446 6.446 15 C -0.028 4.028 16 O -0.253 6.253 17 C -0.003 4.003 18 C -0.234 4.234 19 C -0.096 4.096 20 N -0.284 5.284 21 C -0.136 4.136 22 H 0.217 0.783 23 H 0.131 0.869 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.161 0.839 34 H 0.120 0.880 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.807 -2.839 -11.836 12.199 hybrid contribution -0.454 1.238 1.611 2.082 sum -1.261 -1.601 -10.225 10.426 Atomic orbital electron populations 1.24297 0.95388 1.02580 1.05234 1.23176 0.94360 0.98293 0.96111 1.18295 0.84344 0.93428 0.93284 1.43628 1.56380 1.05066 1.10743 1.19628 1.30281 1.07942 0.86412 0.87732 1.25298 0.95108 0.97560 0.99259 1.70074 1.19601 1.19387 1.40999 0.86035 0.79585 0.78149 0.81214 1.19823 1.20994 1.19793 1.19667 0.85141 0.83362 0.87902 1.90552 1.49829 1.39947 1.64286 1.22322 1.00862 0.83370 0.96263 1.88049 1.86660 1.26258 1.24340 1.24477 0.94537 0.97260 0.83985 1.22309 0.96961 1.02357 1.01819 1.23802 0.91538 0.94180 1.00072 1.65045 1.08457 1.12953 1.41921 1.24311 0.96961 0.92623 0.99745 0.78294 0.86919 0.92205 0.92000 0.92005 0.90892 0.91463 0.91545 0.91211 0.89904 0.87494 0.83902 0.88043 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.14 19.25 29.55 0.57 -4.57 16 2 C -0.12 -2.56 10.88 -37.13 -0.40 -2.96 16 3 C 0.23 4.94 4.91 -6.83 -0.03 4.91 16 4 N -0.44 -10.99 2.60 -117.93 -0.31 -11.30 16 5 C -0.32 -8.64 9.33 -14.93 -0.14 -8.78 16 6 H 0.10 3.02 7.38 -52.49 -0.39 2.64 16 7 C 0.03 0.83 4.87 -17.47 -0.08 0.74 16 8 N -0.86 -22.27 9.48 55.50 0.53 -21.75 16 9 Si 0.92 20.24 29.60 -169.99 -5.03 15.21 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 13 C 0.45 11.22 7.64 -10.99 -0.08 11.14 16 14 O -0.56 -16.28 16.15 -14.37 -0.23 -16.51 16 15 C 0.05 0.99 4.37 36.00 0.16 1.14 16 16 O -0.34 -6.33 9.85 -55.14 -0.54 -6.87 16 17 C 0.04 0.54 1.36 -89.69 -0.12 0.42 16 18 C -0.18 -2.09 8.94 37.16 0.33 -1.76 16 19 C 0.03 0.42 8.30 -2.77 -0.02 0.40 16 20 N -0.66 -8.58 8.55 -116.94 -1.00 -9.58 16 21 C -0.01 -0.07 8.25 -2.76 -0.02 -0.10 16 22 H 0.20 3.24 7.80 -54.10 -0.42 2.81 16 23 H 0.11 2.54 6.44 -51.92 -0.33 2.21 16 24 H 0.06 1.05 6.69 -51.93 -0.35 0.70 16 25 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 26 H 0.06 1.02 7.32 -51.93 -0.38 0.64 16 27 H 0.07 1.33 5.72 -51.93 -0.30 1.04 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.82 6.17 -51.93 -0.32 0.50 16 30 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.11 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.35 4.76 8.89 -39.29 -0.35 4.41 16 34 H 0.10 1.04 7.96 -51.93 -0.41 0.63 16 35 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 LS Contribution 298.69 15.07 4.50 4.50 Total: -1.00 -31.79 298.69 -6.42 -38.21 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.48 Total: 7.51 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 0.15 Total: 0.58 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: -0.78 Total: -42.63 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.77 Total: -23.38 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.79 -6.42 -38.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300825595.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.227 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds