Wall clock time and date at job start Mon Mar 30 2020 03:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47340 * 325.03194 * 3 2 1 5 5 C 1.37098 * 120.00299 * 264.13841 * 4 3 2 6 6 H 1.07995 * 120.00283 * 197.43266 * 5 4 3 7 7 C 1.38955 * 119.99603 * 17.44416 * 5 4 3 8 8 N 1.31410 * 120.00243 * 21.51150 * 7 5 4 9 9 Si 1.86807 * 119.99636 * 201.51926 * 7 5 4 10 10 H 1.48499 * 109.47140 * 59.99490 * 9 7 5 11 11 H 1.48493 * 109.46884 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46941 * 299.99863 * 9 7 5 13 13 C 1.34773 * 119.99703 * 84.14290 * 4 3 2 14 14 O 1.21297 * 120.00143 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00384 * 0.02562 * 13 4 3 16 16 O 1.42896 * 109.47302 * 180.02562 * 15 13 4 17 17 C 1.42905 * 113.99780 * 179.97438 * 16 15 13 18 18 C 1.52998 * 113.01191 * 311.63449 * 17 16 15 19 19 C 1.53940 * 113.73079 * 179.97438 * 17 16 15 20 20 N 1.47952 * 86.18101 * 269.36363 * 19 17 16 21 21 C 1.47966 * 90.76570 * 335.30917 * 20 19 17 22 22 H 4.40641 * 5.51356 * 179.97438 * 4 1 2 23 23 H 1.09009 * 109.47098 * 205.03577 * 3 2 1 24 24 H 1.09003 * 109.47365 * 85.03735 * 3 2 1 25 25 H 0.96997 * 119.99985 * 179.97438 * 8 7 5 26 26 H 1.09000 * 109.47367 * 59.99851 * 15 13 4 27 27 H 1.09004 * 109.46538 * 299.99971 * 15 13 4 28 28 H 1.09001 * 109.47241 * 288.36275 * 18 17 16 29 29 H 1.09001 * 109.47090 * 48.36188 * 18 17 16 30 30 H 1.09001 * 109.47196 * 168.36642 * 18 17 16 31 31 H 1.09000 * 113.75976 * 23.68396 * 19 17 16 32 32 H 1.09002 * 113.75671 * 155.04455 * 19 17 16 33 33 H 1.00896 * 111.00560 * 88.20283 * 20 19 17 34 34 H 1.08993 * 113.75887 * 270.37555 * 21 20 19 35 35 H 1.09000 * 113.85898 * 139.01956 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.1310 0.7916 5 6 3.4776 -0.9504 2.1067 6 1 4.0904 -1.6832 2.6105 7 6 3.0363 0.1753 2.7914 8 7 1.9847 0.8357 2.3614 9 14 3.9382 0.7500 4.3231 10 1 5.3467 1.0693 3.9776 11 1 3.2739 1.9636 4.8624 12 1 3.9112 -0.3258 5.3463 13 6 3.2477 -2.3495 0.2269 14 8 3.6520 -3.2866 0.8824 15 6 2.8716 -2.5479 -1.2188 16 8 3.0766 -3.9148 -1.5811 17 6 2.7476 -4.2116 -2.9398 18 6 1.3800 -3.6670 -3.3566 19 6 2.9713 -5.6855 -3.3236 20 7 4.3361 -5.2727 -3.7183 21 6 3.8745 -3.8838 -3.9359 22 1 -1.0499 -0.0001 0.0003 23 1 3.0089 0.9320 0.4349 24 1 3.0094 -0.0881 -1.0238 25 1 1.6765 1.6213 2.8396 26 1 3.4919 -1.9082 -1.8467 27 1 1.8224 -2.2883 -1.3601 28 1 0.5946 -4.2498 -2.8752 29 1 1.2963 -2.6236 -3.0527 30 1 1.2745 -3.7398 -4.4391 31 1 2.9474 -6.3689 -2.4747 32 1 2.3551 -6.0204 -4.1580 33 1 4.9703 -5.3244 -2.9353 34 1 3.5225 -3.6918 -4.9494 35 1 4.5712 -3.1263 -3.5771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300825595.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:17 Heat of formation + Delta-G solvation = 11.881050 kcal Electronic energy + Delta-G solvation = -18891.580407 eV Core-core repulsion = 15892.815115 eV Total energy + Delta-G solvation = -2998.765292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.39101 -40.36928 -37.44204 -36.76743 -34.08069 -33.07992 -31.14182 -29.65644 -28.12199 -27.07070 -26.15864 -24.73642 -21.34677 -20.74502 -19.73976 -18.52065 -18.18069 -17.55137 -16.98256 -16.85379 -16.41824 -15.85156 -15.71330 -15.35915 -14.81815 -14.68054 -14.12136 -14.05421 -13.74224 -13.58807 -13.52160 -12.98580 -12.81684 -12.79445 -12.53532 -12.26313 -12.15893 -11.50964 -11.22397 -11.10743 -10.80256 -10.64824 -10.34838 -9.89348 -9.52795 -8.36097 -5.97423 1.35933 1.42135 1.51255 1.77640 1.98367 2.28958 2.30950 2.41145 2.99513 3.01273 3.23583 3.47166 3.81853 3.89955 4.05224 4.07212 4.21076 4.28126 4.43852 4.61803 4.62833 4.65819 4.74667 4.87861 4.92674 5.02923 5.03239 5.22483 5.39205 5.43940 5.90105 6.10773 6.25563 6.43131 7.09417 7.10938 7.33572 7.90740 8.62216 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.032360 B = 0.005908 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.067108 B = 4738.533374 C = 5306.671987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.160 4.160 3 C 0.231 3.769 4 N -0.445 5.445 5 C -0.357 4.357 6 H 0.073 0.927 7 C 0.007 3.993 8 N -0.868 5.868 9 Si 0.985 3.015 10 H -0.266 1.266 11 H -0.270 1.270 12 H -0.281 1.281 13 C 0.434 3.566 14 O -0.621 6.621 15 C 0.071 3.929 16 O -0.369 6.369 17 C 0.024 3.976 18 C -0.172 4.172 19 C 0.038 3.962 20 N -0.663 5.663 21 C 0.002 3.998 22 H 0.234 0.766 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.274 0.726 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.337 0.663 34 H 0.130 0.870 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 -1.029 -13.277 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.161 4.161 3 C 0.108 3.892 4 N -0.164 5.164 5 C -0.484 4.484 6 H 0.091 0.909 7 C -0.197 4.197 8 N -0.505 5.505 9 Si 0.809 3.191 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.207 1.207 13 C 0.224 3.776 14 O -0.507 6.507 15 C -0.008 4.008 16 O -0.288 6.288 17 C -0.017 4.017 18 C -0.230 4.230 19 C -0.092 4.092 20 N -0.289 5.289 21 C -0.128 4.128 22 H 0.251 0.749 23 H 0.115 0.885 24 H 0.117 0.883 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.872 -1.780 -13.542 13.787 hybrid contribution -0.197 0.905 2.107 2.302 sum -2.069 -0.875 -11.435 11.654 Atomic orbital electron populations 1.25167 0.96347 1.00684 1.03469 1.23398 0.94941 1.00008 0.97758 1.18392 0.84788 0.91397 0.94582 1.43834 1.55867 1.06310 1.10424 1.19523 1.31972 1.08728 0.88165 0.90885 1.25970 0.95323 0.96700 1.01709 1.70157 1.19518 1.19119 1.41680 0.85128 0.78845 0.77601 0.77523 1.19071 1.19455 1.20675 1.20685 0.84133 0.82572 0.90232 1.90497 1.52315 1.41663 1.66270 1.22036 1.01700 0.84541 0.92513 1.88008 1.87267 1.25867 1.27642 1.24839 0.96324 0.98530 0.81986 1.22303 0.95282 1.01641 1.03763 1.23952 0.91512 0.93140 1.00598 1.65112 1.08674 1.13710 1.41437 1.24400 0.95908 0.91949 1.00572 0.74950 0.88466 0.88285 0.91551 0.89157 0.89781 0.91952 0.92058 0.88089 0.91248 0.84535 0.84903 0.85229 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.01 19.25 74.32 1.43 -7.58 16 2 C -0.16 -6.73 10.88 31.12 0.34 -6.39 16 3 C 0.23 9.80 4.91 84.57 0.42 10.21 16 4 N -0.45 -22.82 2.60 -645.41 -1.68 -24.50 16 5 C -0.36 -20.20 9.33 84.04 0.78 -19.41 16 6 H 0.07 4.49 7.38 -2.91 -0.02 4.47 16 7 C 0.01 0.37 4.87 84.93 0.41 0.78 16 8 N -0.87 -44.35 9.48 21.66 0.21 -44.15 16 9 Si 0.99 41.63 29.60 68.60 2.03 43.66 16 10 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 13 C 0.43 22.15 7.64 87.66 0.67 22.82 16 14 O -0.62 -37.69 16.15 15.95 0.26 -37.43 16 15 C 0.07 2.69 4.37 71.24 0.31 3.00 16 16 O -0.37 -13.88 9.85 -129.94 -1.28 -15.16 16 17 C 0.02 0.62 1.36 -10.15 -0.01 0.60 16 18 C -0.17 -3.58 8.94 71.98 0.64 -2.93 16 19 C 0.04 0.87 8.30 86.41 0.72 1.59 16 20 N -0.66 -16.39 8.55 -527.10 -4.51 -20.90 16 21 C 0.00 0.04 8.25 86.41 0.71 0.75 16 22 H 0.23 6.74 7.80 -4.42 -0.03 6.71 16 23 H 0.10 4.38 6.44 -2.38 -0.02 4.37 16 24 H 0.10 3.31 6.69 -2.39 -0.02 3.29 16 25 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 26 H 0.09 2.83 7.32 -2.39 -0.02 2.81 16 27 H 0.08 2.97 5.72 -2.39 -0.01 2.95 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.34 6.17 -2.39 -0.01 1.32 16 30 H 0.10 1.45 7.94 -2.39 -0.02 1.43 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.14 2.32 8.10 -2.39 -0.02 2.30 16 33 H 0.34 9.24 8.89 -89.70 -0.80 8.44 16 34 H 0.13 2.14 7.96 -2.39 -0.02 2.12 16 35 H 0.07 1.66 8.05 -2.39 -0.02 1.64 16 Total: -1.00 -71.07 298.69 1.75 -69.31 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.30 Total: 25.72 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 6.42 Total: 3.44 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -5.98 Total: -89.55 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -1.02 Total: -52.59 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -71.07 1.75 -69.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300825595.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.194 kcal (2) G-P(sol) polarization free energy of solvation -71.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds