Wall clock time and date at job start Mon Mar 30 2020 04:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47018 * 131.01283 * 3 2 1 5 5 C 1.37095 * 120.00383 * 263.14051 * 4 3 2 6 6 H 1.08000 * 120.00192 * 200.13634 * 5 4 3 7 7 C 1.38956 * 119.99650 * 20.14159 * 5 4 3 8 8 N 1.31404 * 120.00126 * 9.25554 * 7 5 4 9 9 Si 1.86797 * 119.99643 * 189.25599 * 7 5 4 10 10 H 1.48504 * 109.47390 * 60.00411 * 9 7 5 11 11 H 1.48501 * 109.46736 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47651 * 299.99636 * 9 7 5 13 13 C 1.34779 * 119.99469 * 83.14978 * 4 3 2 14 14 O 1.21285 * 120.00357 * 5.68942 * 13 4 3 15 15 C 1.50705 * 119.99435 * 185.69148 * 13 4 3 16 16 C 1.53000 * 110.45990 * 55.10451 * 15 13 4 17 17 C 1.54479 * 110.51305 * 292.49458 * 15 13 4 18 18 O 1.44427 * 104.80611 * 265.33917 * 17 15 13 19 19 C 1.44424 * 105.27260 * 319.48850 * 18 17 15 20 20 C 1.54481 * 104.80585 * 40.51141 * 19 18 17 21 21 H 1.08997 * 110.51056 * 94.66675 * 20 19 18 22 22 N 1.46902 * 110.51182 * 217.37765 * 20 19 18 23 23 H 4.40639 * 5.51498 * 180.02562 * 4 1 2 24 24 H 1.09002 * 109.46916 * 251.01984 * 3 2 1 25 25 H 1.09000 * 109.47029 * 11.01707 * 3 2 1 26 26 H 0.96998 * 120.00108 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.47096 * 64.68505 * 16 15 13 28 28 H 1.08999 * 109.47336 * 184.68465 * 16 15 13 29 29 H 1.08996 * 109.46825 * 304.68981 * 16 15 13 30 30 H 1.09003 * 110.36995 * 24.17255 * 17 15 13 31 31 H 1.08996 * 110.37304 * 146.49976 * 17 15 13 32 32 H 1.08995 * 110.37317 * 159.34796 * 19 18 17 33 33 H 1.09008 * 110.36967 * 281.56871 * 19 18 17 34 34 H 1.00902 * 110.99533 * 294.64485 * 22 20 19 35 35 H 1.00901 * 110.99966 * 58.59698 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9073 -1.0422 5 6 3.4963 0.4111 -2.2678 6 1 4.1441 0.9860 -2.9130 7 6 3.0300 -0.8313 -2.6798 8 7 2.1028 -1.4492 -1.9832 9 14 3.7212 -1.6230 -4.2241 10 1 5.1840 -1.8236 -4.0654 11 1 3.0632 -2.9360 -4.4441 12 1 3.4662 -0.7395 -5.3901 13 6 3.2266 2.2291 -0.7960 14 8 3.0054 2.6556 0.3176 15 6 3.6051 3.1772 -1.9047 16 6 2.6577 3.0138 -3.0949 17 6 5.0683 2.9430 -2.3413 18 8 5.8380 3.8995 -1.5807 19 6 5.0518 5.1110 -1.5862 20 6 3.5940 4.6363 -1.3965 21 1 3.3147 4.6719 -0.3435 22 7 2.6773 5.4547 -2.2014 23 1 -1.0502 0.0000 0.0003 24 1 3.0091 0.3351 0.9718 25 1 3.0097 -1.0079 -0.1964 26 1 1.7776 -2.3167 -2.2706 27 1 1.6503 3.3078 -2.8004 28 1 2.9948 3.6452 -3.9170 29 1 2.6532 1.9719 -3.4152 30 1 5.3788 1.9268 -2.0981 31 1 5.1800 3.1293 -3.4094 32 1 5.3496 5.7603 -0.7630 33 1 5.1625 5.6309 -2.5378 34 1 2.6644 6.4096 -1.8756 35 1 2.9174 5.4099 -3.1804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300877620.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:20 Heat of formation + Delta-G solvation = -17.606932 kcal Electronic energy + Delta-G solvation = -19847.770622 eV Core-core repulsion = 16847.726635 eV Total energy + Delta-G solvation = -3000.043987 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.76175 -39.48162 -37.05453 -35.64608 -33.97006 -33.59134 -32.36326 -28.54226 -28.25005 -27.22924 -26.67431 -24.02938 -22.16311 -20.42946 -19.69593 -18.68529 -17.69611 -17.32268 -16.86675 -16.42311 -16.20310 -16.08902 -15.72676 -15.37957 -14.79632 -14.24969 -14.10728 -13.83874 -13.78297 -13.37978 -13.17209 -12.90395 -12.70773 -12.63770 -12.19380 -12.09896 -11.82881 -11.49427 -11.22802 -11.16387 -10.88345 -10.56330 -10.16023 -9.78960 -9.58585 -8.19465 -5.89408 1.46395 1.52303 1.60036 1.86742 2.12476 2.34847 2.41724 2.97135 3.07566 3.17106 3.54854 3.76491 3.86956 3.96558 4.05068 4.21778 4.25095 4.50251 4.64537 4.69860 4.78036 4.82869 5.00859 5.04853 5.14152 5.23906 5.40334 5.44234 5.58225 5.80993 5.81928 6.23814 6.41941 6.68373 7.10615 7.14276 7.55414 7.96216 8.78028 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.020738 B = 0.009815 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.857609 B = 2851.969183 C = 3559.019302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.140 4.140 3 C 0.239 3.761 4 N -0.445 5.445 5 C -0.349 4.349 6 H 0.123 0.877 7 C -0.004 4.004 8 N -0.886 5.886 9 Si 0.983 3.017 10 H -0.266 1.266 11 H -0.290 1.290 12 H -0.260 1.260 13 C 0.464 3.536 14 O -0.635 6.635 15 C -0.085 4.085 16 C -0.123 4.123 17 C 0.055 3.945 18 O -0.395 6.395 19 C 0.017 3.983 20 C 0.075 3.925 21 H 0.080 0.920 22 N -0.831 5.831 23 H 0.235 0.765 24 H 0.052 0.948 25 H 0.110 0.890 26 H 0.268 0.732 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.353 0.647 35 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.309 7.599 -5.846 10.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.142 4.142 3 C 0.117 3.883 4 N -0.162 5.162 5 C -0.476 4.476 6 H 0.141 0.859 7 C -0.207 4.207 8 N -0.523 5.523 9 Si 0.807 3.193 10 H -0.190 1.190 11 H -0.216 1.216 12 H -0.184 1.184 13 C 0.254 3.746 14 O -0.523 6.523 15 C -0.089 4.089 16 C -0.181 4.181 17 C -0.022 4.022 18 O -0.313 6.313 19 C -0.062 4.062 20 C -0.038 4.038 21 H 0.098 0.902 22 N -0.364 5.364 23 H 0.251 0.749 24 H 0.070 0.930 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.168 0.832 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.760 7.061 -4.961 9.060 hybrid contribution 0.414 -0.296 -0.570 0.764 sum 3.174 6.765 -5.531 9.296 Atomic orbital electron populations 1.25126 0.96377 1.03330 1.03465 1.23575 0.95172 0.97876 0.97552 1.18070 0.84515 0.96089 0.89668 1.43761 1.55526 1.04205 1.12708 1.20117 1.29396 1.03664 0.94394 0.85940 1.26149 0.95171 0.97737 1.01622 1.70150 1.26243 1.15809 1.40124 0.85117 0.78503 0.77407 0.78252 1.19042 1.21624 1.18403 1.20555 0.81494 0.83141 0.89408 1.90459 1.58210 1.77549 1.26114 1.21697 0.97692 0.93851 0.95659 1.21708 0.97654 1.03812 0.94897 1.23751 0.87742 0.94101 0.96600 1.89091 1.44086 1.23203 1.74942 1.24475 0.90622 0.88080 1.02999 1.22621 0.91038 0.91222 0.98886 0.90233 1.58722 1.54832 1.15559 1.07290 0.74876 0.93007 0.87275 0.92164 0.93649 0.89920 0.90631 0.89161 0.88808 0.88361 0.89709 0.83227 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.13 19.25 74.32 1.43 -10.70 16 2 C -0.14 -7.17 11.66 31.13 0.36 -6.80 16 3 C 0.24 12.24 5.09 84.57 0.43 12.67 16 4 N -0.45 -22.39 2.61 -645.41 -1.68 -24.07 16 5 C -0.35 -16.41 6.28 84.04 0.53 -15.89 16 6 H 0.12 5.19 4.14 -2.91 -0.01 5.18 16 7 C 0.00 -0.20 5.15 84.93 0.44 0.24 16 8 N -0.89 -44.71 8.99 21.66 0.19 -44.52 16 9 Si 0.98 37.07 29.56 68.60 2.03 39.10 16 10 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 11 H -0.29 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 13 C 0.46 22.94 6.37 87.66 0.56 23.50 16 14 O -0.63 -35.31 14.95 -3.04 -0.05 -35.36 16 15 C -0.09 -3.27 0.69 -51.91 -0.04 -3.31 16 16 C -0.12 -4.36 7.10 71.98 0.51 -3.85 16 17 C 0.05 1.91 5.47 72.48 0.40 2.30 16 18 O -0.39 -13.99 11.65 -148.98 -1.74 -15.72 16 19 C 0.02 0.47 7.34 72.49 0.53 1.01 16 20 C 0.08 2.51 3.84 45.93 0.18 2.69 16 21 H 0.08 3.28 6.50 -2.39 -0.02 3.27 16 22 N -0.83 -21.50 8.14 -164.46 -1.34 -22.84 16 23 H 0.23 8.38 7.80 -4.41 -0.03 8.34 16 24 H 0.05 2.66 7.56 -2.39 -0.02 2.64 16 25 H 0.11 5.66 6.16 -2.39 -0.01 5.64 16 26 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 27 H 0.04 1.76 7.78 -2.39 -0.02 1.74 16 28 H 0.08 2.20 6.91 -2.39 -0.02 2.18 16 29 H 0.08 3.01 5.01 -2.39 -0.01 3.00 16 30 H 0.09 3.50 6.07 -2.39 -0.01 3.49 16 31 H 0.09 2.62 7.80 -2.39 -0.02 2.60 16 32 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.08 1.80 8.00 -2.38 -0.02 1.78 16 34 H 0.35 7.18 9.08 -89.69 -0.81 6.36 16 35 H 0.35 7.47 7.25 -89.69 -0.65 6.82 16 Total: -1.00 -64.19 281.94 2.42 -61.77 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -0.33 Total: 39.78 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 5.33 Total: 1.87 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -2.83 Total: -91.43 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -1.78 Total: -51.08 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -64.19 2.42 -61.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300877620.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.161 kcal (2) G-P(sol) polarization free energy of solvation -64.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds