Wall clock time and date at job start Mon Mar 30 2020 03:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37837 * 125.89704 * 2 1 4 4 C 1.47118 * 127.02466 * 359.97438 * 3 2 1 5 5 O 1.21552 * 119.99694 * 359.97438 * 4 3 2 6 6 O 1.34784 * 120.00116 * 179.71268 * 4 3 2 7 7 C 1.46736 * 105.95607 * 179.73501 * 3 2 1 8 8 C 1.34432 * 106.37306 * 0.25623 * 7 3 2 9 9 C 1.50700 * 125.46060 * 180.02562 * 8 7 3 10 10 N 1.46893 * 109.47454 * 94.97820 * 9 8 7 11 11 C 1.46896 * 111.00197 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.47257 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99612 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99972 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00047 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00221 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46939 * 89.99842 * 16 14 12 18 18 H 1.48500 * 109.46943 * 209.99910 * 16 14 12 19 19 H 1.48497 * 109.46834 * 329.99742 * 16 14 12 20 20 N 1.34624 * 125.89863 * 180.18512 * 2 1 3 21 21 C 1.46507 * 124.80964 * 0.02562 * 20 2 1 22 22 H 1.09006 * 109.46942 * 90.03015 * 1 2 3 23 23 H 1.09001 * 109.47399 * 210.02486 * 1 2 3 24 24 H 1.08996 * 109.47538 * 330.02503 * 1 2 3 25 25 H 0.96706 * 116.99765 * 179.97438 * 6 4 3 26 26 H 1.07998 * 126.81810 * 180.29613 * 7 3 2 27 27 H 1.09002 * 109.47092 * 214.97897 * 9 8 7 28 28 H 1.08998 * 109.46933 * 334.97511 * 9 8 7 29 29 H 1.00899 * 110.99732 * 303.95571 * 10 9 8 30 30 H 1.08994 * 109.47246 * 300.00126 * 11 10 9 31 31 H 1.09003 * 109.46909 * 60.00041 * 11 10 9 32 32 H 0.96996 * 120.00219 * 180.02562 * 15 14 12 33 33 H 1.09003 * 109.46823 * 270.31608 * 21 20 2 34 34 H 1.08997 * 109.47042 * 30.31234 * 21 20 2 35 35 H 1.09002 * 109.46991 * 150.31175 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1166 0.0000 4 6 1.8831 2.5229 -0.0005 5 8 0.6984 2.7946 -0.0015 6 8 2.8010 3.5099 0.0054 7 6 3.6945 0.6161 0.0065 8 6 3.6109 -0.7256 0.0041 9 6 4.7816 -1.6745 0.0094 10 7 5.0784 -2.0783 1.3902 11 6 6.2172 -3.0052 1.4344 12 6 6.4918 -3.3958 2.8638 13 1 5.8811 -2.9959 3.6597 14 6 7.5219 -4.2646 3.1553 15 7 7.7612 -4.6059 4.4026 16 14 8.5777 -4.9570 1.7786 17 1 9.7350 -4.0570 1.5419 18 1 9.0691 -6.3049 2.1617 19 1 7.7683 -5.0594 0.5378 20 7 2.2963 -1.0905 -0.0035 21 6 1.8123 -2.4733 -0.0085 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 2.4689 4.4182 0.0044 26 1 4.5978 1.2082 0.0128 27 1 4.5370 -2.5566 -0.5825 28 1 5.6526 -1.1793 -0.4196 29 1 5.2453 -1.2728 1.9745 30 1 5.9830 -3.8965 0.8524 31 1 7.0981 -2.5187 1.0155 32 1 8.4861 -5.2169 4.6078 33 1 1.6866 -2.8179 1.0179 34 1 0.8551 -2.5213 -0.5277 35 1 2.5351 -3.1094 -0.5195 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304385581.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:42 Heat of formation + Delta-G solvation = -48.717323 kcal Electronic energy + Delta-G solvation = -18045.654890 eV Core-core repulsion = 15044.261855 eV Total energy + Delta-G solvation = -3001.393035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.42749 -39.54413 -35.96131 -35.57998 -32.84010 -32.66778 -31.55067 -28.66351 -27.09017 -26.14940 -24.01327 -22.45438 -21.19758 -20.43554 -18.59578 -17.85946 -17.08871 -16.40248 -15.83362 -15.41165 -15.10020 -14.84282 -14.31415 -13.86802 -13.61395 -13.40739 -13.15044 -12.92397 -12.75131 -12.45592 -12.34805 -11.92930 -11.89248 -11.74492 -11.43631 -11.25892 -10.77816 -10.56082 -10.36291 -9.88970 -9.36636 -8.65986 -8.61220 -8.05722 -7.60119 -6.11091 -4.09940 1.51627 2.41102 2.72709 3.24031 3.31842 3.32763 3.36448 3.44996 4.36448 4.65241 4.75623 4.86242 5.03277 5.17820 5.20189 5.26318 5.41610 5.44008 5.53991 5.63295 5.73618 5.86878 5.88132 5.95990 6.26782 6.59387 6.64675 6.81864 6.91359 7.14806 7.23581 7.51022 7.77950 8.10190 8.20582 8.57242 8.96874 9.49996 11.02142 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.033080 B = 0.004354 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.217103 B = 6429.982093 C = 6777.307804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.115 3.885 3 C -0.238 4.238 4 C 0.562 3.438 5 O -0.539 6.539 6 O -0.513 6.513 7 C -0.143 4.143 8 C 0.030 3.970 9 C 0.119 3.881 10 N -0.677 5.677 11 C 0.164 3.836 12 C -0.518 4.518 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.268 1.268 20 N -0.420 5.420 21 C 0.068 3.932 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.407 0.593 26 H 0.149 0.851 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.341 0.659 30 H 0.026 0.974 31 H -0.018 1.018 32 H 0.264 0.736 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.963 9.248 -11.947 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.004 4.004 3 C -0.247 4.247 4 C 0.409 3.591 5 O -0.431 6.431 6 O -0.324 6.324 7 C -0.167 4.167 8 C -0.078 4.078 9 C -0.011 4.011 10 N -0.309 5.309 11 C 0.037 3.963 12 C -0.556 4.556 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.538 5.538 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.192 1.192 20 N -0.095 5.095 21 C -0.073 4.073 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.116 0.884 25 H 0.264 0.736 26 H 0.166 0.834 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.159 0.841 30 H 0.044 0.956 31 H 0.000 1.000 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.525 7.902 -11.826 18.952 hybrid contribution 1.272 0.700 -0.748 1.633 sum -11.253 8.602 -12.574 18.940 Atomic orbital electron populations 1.20570 0.87018 1.04303 1.03262 1.20472 0.93439 0.85038 1.01452 1.19137 0.93853 0.88296 1.23377 1.19834 0.82668 0.85375 0.71186 1.90822 1.18467 1.84708 1.49103 1.84623 1.42275 1.19255 1.86212 1.21801 0.95671 0.92372 1.06839 1.20339 0.84136 0.94408 1.08918 1.20438 0.91751 0.95350 0.93553 1.60575 1.44425 1.19889 1.05972 1.20029 0.86340 0.91434 0.98531 1.21026 1.15551 1.27680 0.91335 0.90290 1.24905 0.96994 0.95992 0.95379 1.69896 1.31114 1.34997 1.17750 0.86814 0.81006 0.78727 0.82848 1.20258 1.21134 1.19235 1.43455 1.05590 1.06312 1.54103 1.22140 1.00874 0.79748 1.04553 0.90469 0.91369 0.88372 0.73603 0.83379 0.90963 0.93487 0.84106 0.95589 1.00017 0.92572 0.89649 0.90092 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 9.28 36.00 0.33 -0.66 16 2 C 0.12 1.55 6.93 -81.52 -0.56 0.99 16 3 C -0.24 -3.51 6.33 -103.01 -0.65 -4.17 16 4 C 0.56 7.90 8.32 34.33 0.29 8.19 16 5 O -0.54 -8.27 15.66 -19.31 -0.30 -8.58 16 6 O -0.51 -5.82 13.33 -40.72 -0.54 -6.36 16 7 C -0.14 -2.12 10.89 -37.49 -0.41 -2.53 16 8 C 0.03 0.45 6.35 -81.89 -0.52 -0.07 16 9 C 0.12 1.89 5.78 -4.98 -0.03 1.86 16 10 N -0.68 -13.36 6.48 -116.34 -0.75 -14.12 16 11 C 0.16 3.82 4.51 -4.97 -0.02 3.80 16 12 C -0.52 -14.49 9.87 -34.44 -0.34 -14.83 16 13 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 16 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 20 N -0.42 -5.63 3.08 -115.00 -0.35 -5.99 16 21 C 0.07 0.71 10.39 59.85 0.62 1.33 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.58 7.60 -51.93 -0.39 0.19 16 24 H 0.10 1.15 6.51 -51.93 -0.34 0.81 16 25 H 0.41 2.56 9.11 45.56 0.42 2.97 16 26 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 27 H 0.07 1.08 7.09 -51.93 -0.37 0.71 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.34 6.80 8.71 -39.29 -0.34 6.46 16 30 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 31 H -0.02 -0.41 7.57 -51.93 -0.39 -0.80 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.61 7.51 -51.93 -0.39 0.22 16 35 H 0.09 0.93 6.98 -51.93 -0.36 0.56 16 LS Contribution 302.00 15.07 4.55 4.55 Total: -1.00 -33.37 302.00 -6.52 -39.89 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.83 Total: 4.93 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.39 Total: -4.21 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.33 Total: -46.60 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.85 Total: -14.94 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.37 -6.52 -39.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304385581.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.831 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds