Wall clock time and date at job start Mon Mar 30 2020 03:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86807 * 120.00107 * 2 1 4 4 H 1.48499 * 109.46866 * 274.98872 * 3 2 1 5 5 H 1.48494 * 109.46821 * 34.99115 * 3 2 1 6 6 H 1.48497 * 109.47100 * 154.99098 * 3 2 1 7 7 C 1.40017 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99905 * 186.28241 * 7 2 1 9 9 C 1.41450 * 119.99721 * 6.27853 * 7 2 1 10 10 C 1.40406 * 119.79502 * 173.97294 * 9 7 2 11 11 C 1.39017 * 118.87915 * 180.29605 * 10 9 7 12 12 N 1.39254 * 120.78283 * 179.71400 * 11 10 9 13 13 C 1.46502 * 119.99956 * 179.71771 * 12 11 10 14 14 H 1.09003 * 109.47271 * 35.00130 * 13 12 11 15 15 C 1.52999 * 109.46962 * 274.99882 * 13 12 11 16 16 O 1.42892 * 109.47477 * 294.99960 * 15 13 12 17 17 C 1.52994 * 109.46970 * 154.99975 * 13 12 11 18 18 C 1.52998 * 109.47278 * 294.99915 * 17 13 12 19 19 O 1.42902 * 109.47604 * 180.02562 * 18 17 13 20 20 C 1.39711 * 118.43672 * 359.43527 * 11 10 9 21 21 C 1.38450 * 119.46795 * 0.28173 * 20 11 10 22 22 N 1.31527 * 121.11116 * 0.02562 * 21 20 11 23 23 H 0.97000 * 119.99873 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.55944 * 0.02562 * 10 9 7 25 25 H 0.96998 * 120.00214 * 359.72004 * 12 11 10 26 26 H 1.09006 * 109.47226 * 174.99821 * 15 13 12 27 27 H 1.09002 * 109.47304 * 55.00459 * 15 13 12 28 28 H 0.96694 * 114.00496 * 180.02562 * 16 15 13 29 29 H 1.08995 * 109.47302 * 54.99833 * 17 13 12 30 30 H 1.09006 * 109.47176 * 175.00170 * 17 13 12 31 31 H 1.09003 * 109.47225 * 300.00216 * 18 17 13 32 32 H 1.08997 * 109.47302 * 59.99702 * 18 17 13 33 33 H 0.96691 * 114.00190 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.26934 * 180.25158 * 20 11 10 35 35 H 1.08002 * 119.44549 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4957 2.6199 0.8029 6 1 3.5878 1.4120 0.5919 7 6 2.0076 -1.2126 -0.0005 8 1 3.0827 -1.2154 0.1018 9 6 1.3066 -2.4338 -0.1351 10 6 2.0192 -3.6369 -0.2626 11 6 1.3111 -4.8253 -0.3999 12 7 1.9776 -6.0404 -0.5352 13 6 1.2143 -7.2833 -0.6726 14 1 0.3060 -7.0906 -1.2437 15 6 0.8422 -7.8093 0.7151 16 8 2.0302 -8.1716 1.4216 17 6 2.0640 -8.3256 -1.4021 18 6 2.3315 -7.8547 -2.8330 19 8 3.1246 -8.8285 -3.5147 20 6 -0.0850 -4.7725 -0.3931 21 6 -0.7197 -3.5496 -0.2571 22 7 -0.0304 -2.4361 -0.1346 23 1 -0.4850 0.8401 0.0004 24 1 3.0992 -3.6385 -0.2585 25 1 2.9473 -6.0640 -0.5384 26 1 0.1998 -8.6839 0.6120 27 1 0.3130 -7.0332 1.2681 28 1 1.8697 -8.5146 2.3113 29 1 3.0114 -8.4531 -0.8785 30 1 1.5313 -9.2764 -1.4262 31 1 1.3841 -7.7272 -3.3567 32 1 2.8641 -6.9040 -2.8090 33 1 3.3331 -8.5954 -4.4297 34 1 -0.6645 -5.6783 -0.4936 35 1 -1.7989 -3.5092 -0.2514 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309550363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:25 Heat of formation + Delta-G solvation = -97.405914 kcal Electronic energy + Delta-G solvation = -18288.946119 eV Core-core repulsion = 15285.441789 eV Total energy + Delta-G solvation = -3003.504331 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36993 -38.95037 -37.60183 -36.43091 -35.21086 -33.23675 -31.78266 -29.74159 -28.76008 -27.42015 -24.12404 -23.51722 -22.87325 -21.29535 -19.50884 -18.41134 -18.35929 -17.49033 -16.91377 -16.61794 -16.10874 -15.89968 -15.57360 -15.55242 -14.77201 -14.66424 -14.22386 -14.01517 -13.94021 -13.32052 -12.99542 -12.82358 -12.75122 -12.54526 -12.30894 -12.10089 -11.95189 -11.56713 -11.36182 -10.98109 -10.88673 -10.85893 -9.50614 -9.38358 -8.31391 -8.23354 -6.48045 0.99412 1.41194 1.42396 1.55615 1.60473 2.25398 2.64087 2.91730 3.18611 3.45853 3.97674 4.06626 4.08820 4.25397 4.31040 4.44763 4.47355 4.56808 4.58929 4.74455 4.83942 4.91316 4.99875 5.11929 5.20022 5.24753 5.44610 5.72729 5.75268 5.92136 6.32146 6.64797 6.82511 6.84823 6.92505 6.98725 7.12789 8.34708 8.52615 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.028933 B = 0.004884 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.518391 B = 5731.959974 C = 6061.860044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.027 3.973 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.477 4.477 8 H 0.081 0.919 9 C 0.252 3.748 10 C -0.370 4.370 11 C 0.268 3.732 12 N -0.730 5.730 13 C 0.159 3.841 14 H 0.094 0.906 15 C 0.064 3.936 16 O -0.583 6.583 17 C -0.108 4.108 18 C 0.077 3.923 19 O -0.591 6.591 20 C -0.364 4.364 21 C 0.130 3.870 22 N -0.547 5.547 23 H 0.277 0.723 24 H 0.093 0.907 25 H 0.394 0.606 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.392 0.608 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.396 0.604 34 H 0.125 0.875 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.291 -13.215 -2.432 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.194 4.194 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.509 4.509 8 H 0.099 0.901 9 C 0.128 3.872 10 C -0.397 4.397 11 C 0.159 3.841 12 N -0.361 5.361 13 C 0.054 3.946 14 H 0.112 0.888 15 C -0.016 4.016 16 O -0.390 6.390 17 C -0.146 4.146 18 C -0.001 4.001 19 O -0.399 6.399 20 C -0.392 4.392 21 C -0.035 4.035 22 N -0.263 5.263 23 H 0.088 0.912 24 H 0.112 0.888 25 H 0.228 0.772 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.241 0.759 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.246 0.754 34 H 0.143 0.857 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.792 -12.518 -2.334 12.758 hybrid contribution 0.795 0.134 -0.013 0.807 sum 1.587 -12.383 -2.347 12.703 Atomic orbital electron populations 1.70255 1.08802 1.28837 1.30015 1.26960 0.95702 1.04366 0.92418 0.85164 0.79046 0.75982 0.79249 1.18850 1.19059 1.18120 1.19913 0.94812 0.90886 1.45240 0.90132 1.18739 0.88711 0.92494 0.87271 1.21221 0.98200 0.93006 1.27236 1.17686 0.91727 0.85318 0.89333 1.44450 1.07544 1.02450 1.81650 1.20989 0.95761 0.83358 0.94521 0.88790 1.22707 0.87129 0.98700 0.93036 1.86432 1.32619 1.86749 1.33228 1.21528 1.01114 0.98504 0.93499 1.22145 0.94333 0.90531 0.93077 1.86385 1.74060 1.48124 1.31344 1.21093 0.92439 0.98911 1.26733 1.22754 0.99565 0.88825 0.92357 1.68695 1.07753 1.28163 1.21672 0.91209 0.88843 0.77187 0.90476 0.94570 0.75934 0.91379 0.88917 0.92823 0.94397 0.75409 0.85747 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.29 11.49 21.84 0.25 -42.04 16 2 C 0.03 1.43 5.49 85.29 0.47 1.90 16 3 Si 0.99 39.57 29.56 68.60 2.03 41.59 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.48 -27.26 9.14 23.49 0.21 -27.05 16 8 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 9 C 0.25 14.63 6.54 40.18 0.26 14.89 16 10 C -0.37 -18.97 9.72 22.99 0.22 -18.75 16 11 C 0.27 11.69 6.67 38.51 0.26 11.95 16 12 N -0.73 -24.73 4.64 -318.55 -1.48 -26.21 16 13 C 0.16 4.17 2.08 44.99 0.09 4.26 16 14 H 0.09 2.41 6.54 -2.39 -0.02 2.40 16 15 C 0.06 1.50 6.83 71.98 0.49 2.00 16 16 O -0.58 -14.04 12.83 -148.98 -1.91 -15.95 16 17 C -0.11 -2.51 4.84 30.59 0.15 -2.37 16 18 C 0.08 1.77 6.93 71.98 0.50 2.26 16 19 O -0.59 -12.93 13.66 -148.98 -2.04 -14.97 16 20 C -0.36 -15.60 8.97 22.68 0.20 -15.39 16 21 C 0.13 6.37 11.17 84.79 0.95 7.31 16 22 N -0.55 -31.55 7.89 -189.37 -1.49 -33.04 16 23 H 0.28 13.93 8.29 -92.71 -0.77 13.16 16 24 H 0.09 4.62 8.06 -2.91 -0.02 4.60 16 25 H 0.39 13.18 8.63 -92.71 -0.80 12.38 16 26 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.04 1.01 7.85 -2.39 -0.02 0.99 16 28 H 0.39 6.01 9.12 -74.06 -0.68 5.33 16 29 H 0.07 1.78 7.73 -2.39 -0.02 1.76 16 30 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 0.97 7.75 -2.39 -0.02 0.95 16 33 H 0.40 5.14 9.12 -74.06 -0.68 4.47 16 34 H 0.12 4.40 6.36 -2.91 -0.02 4.38 16 35 H 0.14 5.82 8.06 -2.91 -0.02 5.80 16 Total: -1.00 -71.10 299.55 -1.85 -72.94 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: -1.02 Total: 36.65 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 3.81 Total: -18.98 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -2.72 Total: -101.29 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -3.95 Total: -30.91 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.59 kcal Total: -71.10 -1.85 -72.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309550363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.462 kcal (2) G-P(sol) polarization free energy of solvation -71.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds