Wall clock time and date at job start Mon Mar 30 2020 04:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46758 * 2 1 4 4 O 1.33493 * 126.82848 * 270.01727 * 3 2 1 5 5 N 1.20663 * 113.15437 * 179.97438 * 4 3 2 6 6 C 1.30011 * 112.30145 * 0.02562 * 5 4 3 7 7 C 1.50703 * 127.32988 * 179.97438 * 6 5 4 8 8 C 1.37356 * 126.83001 * 89.99918 * 3 2 1 9 9 C 1.47403 * 128.56722 * 359.97438 * 8 3 2 10 10 O 1.21610 * 119.99903 * 270.02149 * 9 8 3 11 11 N 1.34767 * 120.00137 * 90.01431 * 9 8 3 12 12 C 1.46502 * 120.00130 * 0.02562 * 11 9 8 13 13 C 1.46503 * 120.00180 * 180.02562 * 11 9 8 14 14 C 1.50703 * 109.47157 * 90.00136 * 13 11 9 15 15 H 1.08000 * 119.99743 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99790 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99457 * 179.97438 * 16 14 13 18 18 Si 1.86790 * 120.00295 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47645 * 89.99358 * 18 16 14 20 20 H 1.48504 * 109.47197 * 209.99923 * 18 16 14 21 21 H 1.48504 * 109.46918 * 329.99561 * 18 16 14 22 22 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47635 * 300.00403 * 1 2 3 24 24 H 1.09007 * 109.47032 * 60.00591 * 1 2 3 25 25 H 1.08999 * 109.47103 * 240.00131 * 2 1 3 26 26 H 1.08994 * 109.46792 * 119.99412 * 2 1 3 27 27 H 1.08996 * 109.46955 * 90.02599 * 7 6 5 28 28 H 1.09004 * 109.46954 * 210.02330 * 7 6 5 29 29 H 1.09001 * 109.47301 * 330.02242 * 7 6 5 30 30 H 1.09001 * 109.46981 * 90.00140 * 12 11 9 31 31 H 1.09000 * 109.47366 * 209.99342 * 12 11 9 32 32 H 1.09000 * 109.47383 * 329.99918 * 12 11 9 33 33 H 1.09005 * 109.47130 * 210.00378 * 13 11 9 34 34 H 1.09002 * 109.47119 * 330.00340 * 13 11 9 35 35 H 0.97000 * 119.99837 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2986 2.1754 -1.0685 5 7 2.6890 3.2809 -0.7833 6 6 2.7545 3.4646 0.5021 7 6 3.1953 4.7108 1.2259 8 6 2.3067 2.1972 1.0994 9 6 2.1823 1.8470 2.5258 10 8 1.1380 2.0535 3.1138 11 7 3.2258 1.2978 3.1783 12 6 4.4839 1.0493 2.4701 13 6 3.1020 0.9492 4.5959 14 6 2.6017 -0.4667 4.7232 15 1 2.3968 -1.0487 3.8368 16 6 2.4065 -1.0192 5.9713 17 7 1.9694 -2.2546 6.0823 18 14 2.7615 -0.0127 7.5043 19 1 1.5354 0.7201 7.9103 20 1 3.1844 -0.9173 8.6034 21 1 3.8470 0.9593 7.2178 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 2.3325 5.3535 1.4012 28 1 3.6442 4.4369 2.1807 29 1 3.9278 5.2434 0.6194 30 1 5.1272 1.9253 2.5540 31 1 4.9849 0.1873 2.9108 32 1 4.2760 0.8505 1.4188 33 1 4.0761 1.0351 5.0776 34 1 2.3977 1.6280 5.0768 35 1 1.8317 -2.6433 6.9603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330686075.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:56 Heat of formation + Delta-G solvation = 19.596558 kcal Electronic energy + Delta-G solvation = -19051.932213 eV Core-core repulsion = 16053.501490 eV Total energy + Delta-G solvation = -2998.430723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.71764 -39.02002 -34.99639 -34.65993 -34.40760 -32.55603 -30.28802 -28.84123 -28.43598 -26.17881 -24.54730 -23.58333 -22.02649 -20.03905 -18.84983 -17.65439 -17.12363 -16.97554 -16.01544 -15.53982 -14.97809 -14.42529 -14.04330 -13.67239 -13.39891 -13.24481 -12.98377 -12.88504 -12.55375 -12.43362 -12.32846 -12.07097 -11.58429 -11.51231 -11.38532 -11.01101 -10.75251 -10.59633 -10.22104 -9.82712 -9.64215 -9.44101 -9.09775 -8.64219 -7.83460 -6.14453 -4.13888 1.47904 2.05336 2.94208 3.04486 3.25596 3.31459 3.33598 3.76949 4.22864 4.34704 4.37604 4.92743 5.03794 5.17716 5.23015 5.26636 5.39940 5.45735 5.53746 5.56433 5.62846 5.80227 5.85957 5.92435 6.05809 6.07977 6.11081 6.31727 6.61000 6.85003 7.20316 7.53129 8.07861 8.33529 8.38758 8.77713 8.88235 9.45285 10.98657 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.006885 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.895732 B = 4065.910455 C = 4645.481910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.046 4.046 3 C 0.013 3.987 4 O 0.091 5.909 5 N -0.363 5.363 6 C 0.048 3.952 7 C -0.075 4.075 8 C -0.230 4.230 9 C 0.588 3.412 10 O -0.524 6.524 11 N -0.585 5.585 12 C 0.085 3.915 13 C 0.215 3.785 14 C -0.531 4.531 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.875 3.125 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.266 1.266 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.819 7.654 -11.289 14.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.084 4.084 3 C -0.050 4.050 4 O 0.030 5.970 5 N -0.070 5.070 6 C -0.114 4.114 7 C -0.132 4.132 8 C -0.238 4.238 9 C 0.373 3.627 10 O -0.401 6.401 11 N -0.316 5.316 12 C -0.059 4.059 13 C 0.095 3.905 14 C -0.570 4.570 15 H 0.094 0.906 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.702 3.298 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.190 1.190 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.109 0.891 26 H 0.123 0.877 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.498 8.357 -11.869 14.931 hybrid contribution 0.113 0.052 1.555 1.560 sum 3.612 8.409 -10.314 13.789 Atomic orbital electron populations 1.21767 0.92922 1.03085 1.02926 1.20265 0.97343 0.85628 1.05200 1.24682 0.99079 0.96261 0.84976 1.84476 1.61955 1.17425 1.33152 1.73554 1.17974 0.98854 1.16623 1.24708 1.00738 0.96824 0.89094 1.20180 1.02054 0.91433 0.99534 1.22181 1.10775 0.94830 0.95980 1.16833 0.84013 0.78383 0.83514 1.90796 1.27757 1.54138 1.67389 1.47787 1.11687 1.59414 1.12735 1.21648 0.86245 1.01271 0.96712 1.19749 0.97424 0.97334 0.75982 1.21283 1.45044 0.96153 0.94486 0.90647 1.24838 0.94384 0.94838 0.98810 1.69887 1.45538 1.13688 1.24221 0.86866 0.79404 0.80390 0.83150 1.19838 1.20986 1.19032 0.90935 0.91332 0.92399 0.89083 0.87749 0.89795 0.89869 0.90205 0.93535 0.90182 0.92458 0.94852 0.94355 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.89 37.16 0.37 -1.56 16 2 C -0.05 -0.61 6.38 -27.88 -0.18 -0.79 16 3 C 0.01 0.20 6.50 -34.63 -0.23 -0.03 16 4 O 0.09 1.36 11.06 18.65 0.21 1.57 16 5 N -0.36 -5.63 12.01 34.78 0.42 -5.21 16 6 C 0.05 0.74 7.59 -79.77 -0.61 0.14 16 7 C -0.07 -0.90 10.49 36.01 0.38 -0.52 16 8 C -0.23 -3.97 4.47 -102.89 -0.46 -4.43 16 9 C 0.59 12.26 7.46 -12.53 -0.09 12.17 16 10 O -0.52 -13.05 16.69 5.27 0.09 -12.96 16 11 N -0.59 -11.95 2.86 -184.24 -0.53 -12.47 16 12 C 0.09 1.34 10.26 59.85 0.61 1.96 16 13 C 0.22 5.12 4.23 -5.19 -0.02 5.10 16 14 C -0.53 -14.75 9.94 -34.44 -0.34 -15.10 16 15 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 18 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.10 1.57 8.11 -51.93 -0.42 1.14 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 32 H 0.06 0.83 6.65 -51.93 -0.35 0.48 16 33 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 34 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 305.79 15.07 4.61 4.61 Total: -1.00 -32.89 305.79 -4.65 -37.54 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.88 Total: -2.27 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -0.66 Total: -1.06 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.66 Total: -43.77 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.29 Total: -11.40 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.89 -4.65 -37.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330686075.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.138 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds