Wall clock time and date at job start Mon Mar 30 2020 04:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46758 * 2 1 4 4 O 1.33493 * 126.82848 * 270.01727 * 3 2 1 5 5 N 1.20663 * 113.15437 * 179.97438 * 4 3 2 6 6 C 1.30011 * 112.30145 * 0.02562 * 5 4 3 7 7 C 1.50703 * 127.32988 * 179.97438 * 6 5 4 8 8 C 1.37356 * 126.83001 * 89.99918 * 3 2 1 9 9 C 1.47403 * 128.56722 * 359.97438 * 8 3 2 10 10 O 1.21610 * 119.99903 * 270.02149 * 9 8 3 11 11 N 1.34767 * 120.00137 * 90.01431 * 9 8 3 12 12 C 1.46502 * 120.00130 * 0.02562 * 11 9 8 13 13 C 1.46503 * 120.00180 * 180.02562 * 11 9 8 14 14 C 1.50703 * 109.47157 * 90.00136 * 13 11 9 15 15 H 1.08000 * 119.99743 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99790 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99457 * 179.97438 * 16 14 13 18 18 Si 1.86790 * 120.00295 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47645 * 89.99358 * 18 16 14 20 20 H 1.48504 * 109.47197 * 209.99923 * 18 16 14 21 21 H 1.48504 * 109.46918 * 329.99561 * 18 16 14 22 22 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47635 * 300.00403 * 1 2 3 24 24 H 1.09007 * 109.47032 * 60.00591 * 1 2 3 25 25 H 1.08999 * 109.47103 * 240.00131 * 2 1 3 26 26 H 1.08994 * 109.46792 * 119.99412 * 2 1 3 27 27 H 1.08996 * 109.46955 * 90.02599 * 7 6 5 28 28 H 1.09004 * 109.46954 * 210.02330 * 7 6 5 29 29 H 1.09001 * 109.47301 * 330.02242 * 7 6 5 30 30 H 1.09001 * 109.46981 * 90.00140 * 12 11 9 31 31 H 1.09000 * 109.47366 * 209.99342 * 12 11 9 32 32 H 1.09000 * 109.47383 * 329.99918 * 12 11 9 33 33 H 1.09005 * 109.47130 * 210.00378 * 13 11 9 34 34 H 1.09002 * 109.47119 * 330.00340 * 13 11 9 35 35 H 0.97000 * 119.99837 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2986 2.1754 -1.0685 5 7 2.6890 3.2809 -0.7833 6 6 2.7545 3.4646 0.5021 7 6 3.1953 4.7108 1.2259 8 6 2.3067 2.1972 1.0994 9 6 2.1823 1.8470 2.5258 10 8 1.1380 2.0535 3.1138 11 7 3.2258 1.2978 3.1783 12 6 4.4839 1.0493 2.4701 13 6 3.1020 0.9492 4.5959 14 6 2.6017 -0.4667 4.7232 15 1 2.3968 -1.0487 3.8368 16 6 2.4065 -1.0192 5.9713 17 7 1.9694 -2.2546 6.0823 18 14 2.7615 -0.0127 7.5043 19 1 1.5354 0.7201 7.9103 20 1 3.1844 -0.9173 8.6034 21 1 3.8470 0.9593 7.2178 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 2.3325 5.3535 1.4012 28 1 3.6442 4.4369 2.1807 29 1 3.9278 5.2434 0.6194 30 1 5.1272 1.9253 2.5540 31 1 4.9849 0.1873 2.9108 32 1 4.2760 0.8505 1.4188 33 1 4.0761 1.0351 5.0776 34 1 2.3977 1.6280 5.0768 35 1 1.8317 -2.6433 6.9603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330686075.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:56 Heat of formation + Delta-G solvation = -2.007612 kcal Electronic energy + Delta-G solvation = -19052.869040 eV Core-core repulsion = 16053.501490 eV Total energy + Delta-G solvation = -2999.367550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.93567 -40.67294 -36.73039 -35.86734 -35.58669 -34.63208 -31.60288 -30.40631 -29.72507 -27.63022 -26.09621 -24.80266 -23.72126 -21.31857 -20.29221 -19.13715 -18.91644 -18.46434 -17.47910 -17.15895 -16.48764 -16.07830 -15.35132 -15.17609 -14.73667 -14.41982 -14.34306 -14.18539 -13.99054 -13.82751 -13.70994 -13.49134 -13.26820 -12.88341 -12.58186 -12.53855 -12.47022 -12.05961 -11.89788 -11.73901 -11.20562 -10.92195 -10.81810 -10.42371 -9.54409 -8.32820 -6.38171 0.23683 0.82862 1.34815 1.38679 1.40534 1.46442 1.72397 2.28070 2.32201 3.01239 3.06030 3.20541 3.61082 3.87851 4.07612 4.16821 4.23614 4.29317 4.45915 4.55605 4.56949 4.66321 4.74755 4.77178 4.84851 4.89335 4.90718 4.99096 5.08048 5.22631 5.42992 5.50245 6.21777 6.47893 6.62893 7.11490 7.12577 7.28101 8.83570 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.006885 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.895732 B = 4065.910455 C = 4645.481910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C 0.030 3.970 4 O 0.098 5.902 5 N -0.369 5.369 6 C 0.055 3.945 7 C -0.076 4.076 8 C -0.260 4.260 9 C 0.591 3.409 10 O -0.577 6.577 11 N -0.589 5.589 12 C 0.082 3.918 13 C 0.223 3.777 14 C -0.537 4.537 15 H 0.034 0.966 16 C 0.015 3.985 17 N -0.942 5.942 18 Si 0.942 3.058 19 H -0.277 1.277 20 H -0.276 1.276 21 H -0.236 1.236 22 H 0.088 0.912 23 H 0.031 0.969 24 H 0.077 0.923 25 H 0.131 0.869 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 9.094 -12.028 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.033 4.033 4 O 0.038 5.962 5 N -0.077 5.077 6 C -0.107 4.107 7 C -0.134 4.134 8 C -0.268 4.268 9 C 0.377 3.623 10 O -0.457 6.457 11 N -0.319 5.319 12 C -0.061 4.061 13 C 0.101 3.899 14 C -0.576 4.576 15 H 0.053 0.947 16 C -0.183 4.183 17 N -0.582 5.582 18 Si 0.765 3.235 19 H -0.203 1.203 20 H -0.201 1.201 21 H -0.159 1.159 22 H 0.107 0.893 23 H 0.050 0.950 24 H 0.096 0.904 25 H 0.149 0.851 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.114 9.798 -12.654 16.801 hybrid contribution -0.405 -0.460 1.675 1.784 sum 4.709 9.338 -10.979 15.162 Atomic orbital electron populations 1.21749 0.92694 1.03909 1.02036 1.20371 0.97426 0.84717 1.05958 1.24935 0.97220 0.96625 0.84536 1.84484 1.61780 1.17314 1.32616 1.73548 1.18585 0.99030 1.16530 1.25119 0.99707 0.96972 0.88894 1.20351 1.02995 0.90349 0.99674 1.21882 1.13787 0.96756 0.94343 1.17213 0.83082 0.77290 0.84695 1.90755 1.29692 1.56337 1.68941 1.47842 1.13308 1.58822 1.11889 1.21890 0.84552 1.02727 0.96883 1.19479 0.97771 0.94270 0.78370 1.21502 1.44959 0.97834 0.93278 0.94722 1.25781 0.94107 0.95935 1.02524 1.70033 1.47112 1.15728 1.25288 0.85793 0.79890 0.79228 0.78563 1.20268 1.20106 1.15872 0.89348 0.95020 0.90356 0.85105 0.90107 0.89065 0.89765 0.87689 0.90313 0.90273 0.91187 0.92433 0.95866 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.89 71.98 0.71 -3.00 16 2 C -0.05 -1.19 6.38 29.85 0.19 -1.00 16 3 C 0.03 0.89 6.50 25.48 0.17 1.05 16 4 O 0.10 2.71 11.06 76.98 0.85 3.56 16 5 N -0.37 -10.62 12.01 -44.78 -0.54 -11.16 16 6 C 0.06 1.60 7.59 45.16 0.34 1.94 16 7 C -0.08 -1.66 10.49 71.24 0.75 -0.91 16 8 C -0.26 -8.79 4.47 -18.75 -0.08 -8.88 16 9 C 0.59 24.86 7.46 86.66 0.65 25.50 16 10 O -0.58 -29.70 16.69 -4.06 -0.07 -29.77 16 11 N -0.59 -23.83 2.86 -855.06 -2.44 -26.27 16 12 C 0.08 2.43 10.26 127.77 1.31 3.74 16 13 C 0.22 10.51 4.23 85.63 0.36 10.87 16 14 C -0.54 -30.56 9.94 25.60 0.25 -30.30 16 15 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 16 C 0.02 0.86 5.47 84.65 0.46 1.33 16 17 N -0.94 -57.99 13.96 21.45 0.30 -57.69 16 18 Si 0.94 43.05 27.47 68.60 1.88 44.93 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 22 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.08 2.47 8.11 -2.39 -0.02 2.46 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 32 H 0.07 1.90 6.65 -2.39 -0.02 1.88 16 33 H 0.06 2.45 7.13 -2.38 -0.02 2.43 16 34 H 0.02 1.17 6.85 -2.39 -0.02 1.16 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -73.50 305.79 6.13 -67.37 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.03 Total: 8.68 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 5.11 Total: 0.34 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -2.68 Total: -95.11 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: 0.78 Total: -26.21 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.93 kcal Total: -73.50 6.13 -67.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330686075.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.362 kcal (2) G-P(sol) polarization free energy of solvation -73.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds