Wall clock time and date at job start Mon Mar 30 2020 04:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30258 * 125.61867 * 2 1 4 4 C 1.34474 * 108.70072 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.16658 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.67029 * 0.02562 * 4 3 2 7 7 C 1.50697 * 126.44432 * 180.25867 * 6 4 3 8 8 N 1.46504 * 109.46925 * 89.71018 * 7 6 4 9 9 C 1.34776 * 119.99873 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00412 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99793 * 180.02562 * 9 8 7 12 12 C 1.52998 * 109.47094 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47094 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00007 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99605 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99575 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00395 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47259 * 90.00004 * 17 15 13 19 19 H 1.48505 * 109.47174 * 210.00050 * 17 15 13 20 20 H 1.48495 * 109.47074 * 329.99991 * 17 15 13 21 21 O 1.33964 * 125.61941 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.46932 * 269.97510 * 1 2 3 23 23 H 1.08994 * 109.47103 * 29.97476 * 1 2 3 24 24 H 1.09002 * 109.47223 * 149.98071 * 1 2 3 25 25 H 1.08997 * 109.47862 * 269.98311 * 5 4 3 26 26 H 1.09010 * 109.47022 * 29.98255 * 5 4 3 27 27 H 1.08995 * 109.47218 * 149.97465 * 5 4 3 28 28 H 1.08995 * 109.47419 * 209.71053 * 7 6 4 29 29 H 1.09002 * 109.47246 * 329.71470 * 7 6 4 30 30 H 0.96999 * 120.00097 * 0.02562 * 8 7 6 31 31 H 1.09000 * 109.47362 * 300.00238 * 11 9 8 32 32 H 1.09002 * 109.47045 * 60.00064 * 11 9 8 33 33 H 1.09000 * 109.47263 * 300.00363 * 12 11 9 34 34 H 1.09002 * 109.47069 * 60.00144 * 12 11 9 35 35 H 0.96999 * 120.00032 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0002 6 6 3.5698 -0.6756 -0.0015 7 6 4.7937 -1.5548 0.0031 8 7 5.1884 -1.8351 1.3858 9 6 6.2640 -2.6078 1.6361 10 8 6.9053 -3.0707 0.7168 11 6 6.6697 -2.8965 3.0585 12 6 7.9116 -3.7901 3.0633 13 6 8.3176 -4.0783 4.4856 14 1 7.7467 -3.6658 5.3044 15 6 9.4180 -4.8687 4.7417 16 7 9.7726 -5.1198 5.9830 17 14 10.4058 -5.5816 3.3256 18 1 11.4847 -4.6337 2.9480 19 1 11.0062 -6.8744 3.7423 20 1 9.5119 -5.8036 2.1608 21 8 2.2872 -1.0890 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3634 -0.8898 -0.5141 25 1 5.0476 1.7915 -1.0277 26 1 4.5130 2.5023 0.5141 27 1 5.5820 1.0792 0.5134 28 1 4.5703 -2.4913 -0.5079 29 1 5.6088 -1.0457 -0.5113 30 1 4.6753 -1.4652 2.1212 31 1 6.8933 -1.9602 3.5698 32 1 5.8543 -3.4055 3.5727 33 1 7.6875 -4.7264 2.5521 34 1 8.7270 -3.2815 2.5490 35 1 10.5465 -5.6761 6.1632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331241960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:05 Heat of formation + Delta-G solvation = -32.032516 kcal Electronic energy + Delta-G solvation = -17734.290040 eV Core-core repulsion = 14733.620513 eV Total energy + Delta-G solvation = -3000.669527 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.65579 -39.34276 -35.55269 -35.14944 -33.50462 -32.83742 -31.34118 -29.77440 -28.73515 -26.13571 -24.32606 -22.03475 -21.36322 -20.89699 -19.81168 -17.48713 -17.20021 -16.74216 -15.95797 -15.68719 -15.47078 -14.65674 -14.19658 -13.94306 -13.65621 -13.54342 -13.40064 -13.17020 -13.04627 -12.95517 -12.57311 -12.26827 -12.20519 -11.44116 -11.16677 -10.97668 -10.80037 -10.19592 -10.07398 -9.81620 -9.49258 -9.20106 -9.06282 -8.81245 -8.51645 -6.03859 -4.02873 1.03022 2.27746 2.33309 3.02103 3.37297 3.43806 3.47441 3.54586 3.66418 4.34373 4.50077 4.51915 4.81982 4.96369 4.97270 5.11307 5.23727 5.31537 5.34921 5.42232 5.49420 5.55156 5.73904 5.81788 6.04296 6.06259 6.07401 6.39465 6.65535 7.33966 7.41291 7.43537 7.62825 7.77463 8.46223 8.55761 8.98998 9.58959 11.08972 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.042728 B = 0.003674 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.150109 B = 7619.588641 C = 7732.476013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.196 3.804 3 N -0.484 5.484 4 C 0.013 3.987 5 C -0.077 4.077 6 C -0.070 4.070 7 C 0.209 3.791 8 N -0.741 5.741 9 C 0.513 3.487 10 O -0.537 6.537 11 C -0.121 4.121 12 C 0.001 3.999 13 C -0.526 4.526 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.903 5.903 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.261 1.261 21 O -0.195 6.195 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.402 0.598 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.024 0.976 34 H 0.020 0.980 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.565 12.120 -12.698 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.011 4.011 3 N -0.215 5.215 4 C -0.108 4.108 5 C -0.134 4.134 6 C -0.123 4.123 7 C 0.085 3.915 8 N -0.396 5.396 9 C 0.302 3.698 10 O -0.413 6.413 11 C -0.161 4.161 12 C -0.036 4.036 13 C -0.564 4.564 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.542 5.542 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.185 1.185 21 O -0.082 6.082 22 H 0.113 0.887 23 H 0.119 0.881 24 H 0.108 0.892 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.236 0.764 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.193 12.228 -13.270 24.925 hybrid contribution 0.455 -0.875 -0.277 1.024 sum -16.739 11.353 -13.548 24.344 Atomic orbital electron populations 1.20286 0.81144 1.05171 1.04883 1.26320 0.96507 0.78693 0.99555 1.70405 1.01589 1.30268 1.19253 1.21632 0.93495 0.92044 1.03579 1.20212 0.91844 0.98148 1.03213 1.23124 0.83618 0.94820 1.10739 1.19454 0.88469 0.97658 0.85898 1.46289 1.31943 1.54321 1.07056 1.21610 0.78431 0.76277 0.93437 1.90667 1.52856 1.50583 1.47170 1.21686 1.01903 1.02695 0.89814 1.19379 0.91758 0.94770 0.97738 1.21108 1.12738 1.31435 0.91077 0.90929 1.24978 0.97052 0.95725 0.95508 1.69915 1.26970 1.38665 1.18677 0.86787 0.80701 0.78603 0.83408 1.20217 1.21442 1.18527 1.84410 1.16477 1.37559 1.69774 0.88714 0.88060 0.89224 0.90408 0.90295 0.90163 0.89834 0.88230 0.76427 0.89425 0.89471 0.95777 0.96189 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.20 2.03 8.34 -12.95 -0.11 1.92 16 3 N -0.48 -5.84 11.29 -7.36 -0.08 -5.93 16 4 C 0.01 0.15 7.11 -82.81 -0.59 -0.43 16 5 C -0.08 -0.70 10.05 36.01 0.36 -0.34 16 6 C -0.07 -0.82 6.75 -35.69 -0.24 -1.06 16 7 C 0.21 2.52 5.83 -5.19 -0.03 2.49 16 8 N -0.74 -9.86 5.55 -61.47 -0.34 -10.20 16 9 C 0.51 9.07 7.83 -10.98 -0.09 8.98 16 10 O -0.54 -11.50 15.98 5.56 0.09 -11.41 16 11 C -0.12 -2.30 5.64 -27.88 -0.16 -2.46 16 12 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 13 C -0.53 -14.98 9.66 -34.44 -0.33 -15.31 16 14 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 17 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 20 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 21 O -0.20 -2.31 10.78 5.36 0.06 -2.25 16 22 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 27 H 0.08 0.70 7.79 -51.93 -0.40 0.30 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.14 7.80 -51.93 -0.41 0.73 16 30 H 0.40 4.54 8.46 -40.82 -0.35 4.20 16 31 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 34 H 0.02 0.50 7.52 -51.93 -0.39 0.11 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -35.24 306.47 -5.43 -40.67 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -4.89 Total: -1.85 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -0.99 Total: -4.27 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.35 Total: -43.33 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.15 Total: -13.66 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.24 -5.43 -40.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331241960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.636 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds