Wall clock time and date at job start Mon Mar 30 2020 04:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30258 * 125.61867 * 2 1 4 4 C 1.34474 * 108.70072 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.16658 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.67029 * 0.02562 * 4 3 2 7 7 C 1.50697 * 126.44432 * 180.25867 * 6 4 3 8 8 N 1.46504 * 109.46925 * 89.71018 * 7 6 4 9 9 C 1.34776 * 119.99873 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00412 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99793 * 180.02562 * 9 8 7 12 12 C 1.52998 * 109.47094 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47094 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00007 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99605 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99575 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00395 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47259 * 90.00004 * 17 15 13 19 19 H 1.48505 * 109.47174 * 210.00050 * 17 15 13 20 20 H 1.48495 * 109.47074 * 329.99991 * 17 15 13 21 21 O 1.33964 * 125.61941 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.46932 * 269.97510 * 1 2 3 23 23 H 1.08994 * 109.47103 * 29.97476 * 1 2 3 24 24 H 1.09002 * 109.47223 * 149.98071 * 1 2 3 25 25 H 1.08997 * 109.47862 * 269.98311 * 5 4 3 26 26 H 1.09010 * 109.47022 * 29.98255 * 5 4 3 27 27 H 1.08995 * 109.47218 * 149.97465 * 5 4 3 28 28 H 1.08995 * 109.47419 * 209.71053 * 7 6 4 29 29 H 1.09002 * 109.47246 * 329.71470 * 7 6 4 30 30 H 0.96999 * 120.00097 * 0.02562 * 8 7 6 31 31 H 1.09000 * 109.47362 * 300.00238 * 11 9 8 32 32 H 1.09002 * 109.47045 * 60.00064 * 11 9 8 33 33 H 1.09000 * 109.47263 * 300.00363 * 12 11 9 34 34 H 1.09002 * 109.47069 * 60.00144 * 12 11 9 35 35 H 0.96999 * 120.00032 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0002 6 6 3.5698 -0.6756 -0.0015 7 6 4.7937 -1.5548 0.0031 8 7 5.1884 -1.8351 1.3858 9 6 6.2640 -2.6078 1.6361 10 8 6.9053 -3.0707 0.7168 11 6 6.6697 -2.8965 3.0585 12 6 7.9116 -3.7901 3.0633 13 6 8.3176 -4.0783 4.4856 14 1 7.7467 -3.6658 5.3044 15 6 9.4180 -4.8687 4.7417 16 7 9.7726 -5.1198 5.9830 17 14 10.4058 -5.5816 3.3256 18 1 11.4847 -4.6337 2.9480 19 1 11.0062 -6.8744 3.7423 20 1 9.5119 -5.8036 2.1608 21 8 2.2872 -1.0890 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3634 -0.8898 -0.5141 25 1 5.0476 1.7915 -1.0277 26 1 4.5130 2.5023 0.5141 27 1 5.5820 1.0792 0.5134 28 1 4.5703 -2.4913 -0.5079 29 1 5.6088 -1.0457 -0.5113 30 1 4.6753 -1.4652 2.1212 31 1 6.8933 -1.9602 3.5698 32 1 5.8543 -3.4055 3.5727 33 1 7.6875 -4.7264 2.5521 34 1 8.7270 -3.2815 2.5490 35 1 10.5465 -5.6761 6.1632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331241960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:05 Heat of formation + Delta-G solvation = -59.427800 kcal Electronic energy + Delta-G solvation = -17735.477988 eV Core-core repulsion = 14733.620513 eV Total energy + Delta-G solvation = -3001.857476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.48326 -40.73966 -36.54308 -36.17024 -35.51905 -33.75426 -33.22102 -30.47849 -29.78174 -27.80003 -25.36845 -23.11327 -22.84062 -21.76526 -21.27734 -19.27430 -18.10282 -18.04217 -17.32503 -16.85488 -16.67288 -16.21568 -15.61229 -15.08160 -14.76641 -14.70995 -14.47155 -14.26866 -13.98855 -13.85071 -13.58347 -13.47970 -13.39585 -12.92419 -12.88309 -12.11943 -11.96457 -11.96299 -11.75950 -11.65911 -11.39804 -10.96671 -10.77366 -10.25495 -9.70582 -8.30747 -6.33938 0.18626 1.34892 1.36846 1.45380 1.51679 1.54018 1.62483 2.31352 2.36086 2.98230 3.05139 3.50123 3.73285 3.94508 4.03673 4.30505 4.40537 4.48934 4.50347 4.60994 4.62620 4.68477 4.72080 4.88299 4.96557 4.99121 5.13047 5.21745 5.35555 5.38265 5.45546 5.61693 6.23648 6.43625 6.62501 6.72746 7.18977 7.31553 8.85010 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.042728 B = 0.003674 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.150109 B = 7619.588641 C = 7732.476013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.202 3.798 3 N -0.514 5.514 4 C 0.012 3.988 5 C -0.077 4.077 6 C -0.086 4.086 7 C 0.214 3.786 8 N -0.720 5.720 9 C 0.522 3.478 10 O -0.578 6.578 11 C -0.116 4.116 12 C 0.005 3.995 13 C -0.530 4.530 14 H 0.049 0.951 15 C 0.012 3.988 16 N -0.945 5.945 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.260 1.260 21 O -0.208 6.208 22 H 0.111 0.889 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.414 0.586 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.011 0.989 34 H 0.012 0.988 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.740 12.872 -13.920 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.004 4.004 3 N -0.245 5.245 4 C -0.109 4.109 5 C -0.134 4.134 6 C -0.139 4.139 7 C 0.091 3.909 8 N -0.374 5.374 9 C 0.311 3.689 10 O -0.457 6.457 11 C -0.156 4.156 12 C -0.033 4.033 13 C -0.568 4.568 14 H 0.067 0.933 15 C -0.186 4.186 16 N -0.586 5.586 17 Si 0.764 3.236 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.184 1.184 21 O -0.096 6.096 22 H 0.130 0.870 23 H 0.132 0.868 24 H 0.125 0.875 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.250 0.750 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.410 13.019 -14.485 26.800 hybrid contribution 0.671 -1.027 0.146 1.235 sum -17.739 11.992 -14.339 25.770 Atomic orbital electron populations 1.20597 0.77912 1.06657 1.06359 1.27365 0.98053 0.77944 0.97086 1.70457 1.02009 1.31121 1.20901 1.22015 0.94101 0.92329 1.02450 1.20294 0.91070 0.97918 1.04102 1.22935 0.83575 0.94725 1.12636 1.19442 0.89139 0.97720 0.84634 1.46013 1.30389 1.52551 1.08432 1.21155 0.79077 0.76529 0.92157 1.90657 1.54547 1.52577 1.47905 1.21507 0.99996 1.02593 0.91520 1.19235 0.94050 0.95296 0.94766 1.21440 1.12216 1.30652 0.92471 0.93277 1.25832 0.98441 0.96415 0.97870 1.70031 1.27937 1.39906 1.20690 0.85802 0.79315 0.78269 0.80174 1.19248 1.20529 1.18374 1.84411 1.16671 1.38306 1.70185 0.87046 0.86783 0.87471 0.89209 0.89905 0.89833 0.90290 0.87372 0.75005 0.87688 0.88077 0.97041 0.96924 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 71.24 0.75 0.28 16 2 C 0.20 3.80 8.34 88.34 0.74 4.54 16 3 N -0.51 -11.60 11.29 -291.98 -3.30 -14.90 16 4 C 0.01 0.25 7.11 41.26 0.29 0.54 16 5 C -0.08 -1.27 10.05 71.24 0.72 -0.55 16 6 C -0.09 -1.90 6.75 24.79 0.17 -1.73 16 7 C 0.21 4.85 5.83 85.63 0.50 5.35 16 8 N -0.72 -17.87 5.55 -466.79 -2.59 -20.46 16 9 C 0.52 17.71 7.83 87.66 0.69 18.39 16 10 O -0.58 -24.21 15.98 -3.02 -0.05 -24.26 16 11 C -0.12 -4.28 5.64 29.85 0.17 -4.11 16 12 C 0.00 0.22 3.33 29.85 0.10 0.32 16 13 C -0.53 -30.38 9.66 25.60 0.25 -30.13 16 14 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 15 C 0.01 0.71 5.47 84.65 0.46 1.17 16 16 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 17 Si 0.94 46.41 27.47 68.60 1.88 48.29 16 18 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 20 H -0.26 -12.67 6.54 99.48 0.65 -12.01 16 21 O -0.21 -4.60 10.78 -3.73 -0.04 -4.64 16 22 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 23 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.08 1.31 7.79 -2.39 -0.02 1.29 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.11 2.31 7.80 -2.39 -0.02 2.29 16 30 H 0.41 8.47 8.46 -92.71 -0.78 7.68 16 31 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 32 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 33 H 0.01 0.58 7.16 -2.39 -0.02 0.56 16 34 H 0.01 0.62 7.52 -2.39 -0.02 0.61 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -75.50 306.47 1.29 -74.21 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.26 Total: 6.54 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 4.83 Total: -5.93 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -5.59 Total: -94.22 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.09 Total: -28.90 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.29 kcal Total: -75.50 1.29 -74.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331241960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.785 kcal (2) G-P(sol) polarization free energy of solvation -75.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds