Wall clock time and date at job start Mon Mar 30 2020 04:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47094 * 2 1 4 4 H 1.08997 * 109.47333 * 305.36724 * 3 2 1 5 5 C 1.50699 * 109.46997 * 185.35937 * 3 2 1 6 6 O 1.21283 * 120.00449 * 240.00317 * 5 3 2 7 7 N 1.34778 * 119.99623 * 60.00628 * 5 3 2 8 8 C 1.37100 * 120.00115 * 179.72096 * 7 5 3 9 9 H 1.07996 * 119.99912 * 0.27429 * 8 7 5 10 10 C 1.38950 * 120.00232 * 180.27620 * 8 7 5 11 11 N 1.31410 * 119.99951 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00024 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47211 * 89.99850 * 12 10 8 14 14 H 1.48498 * 109.47404 * 209.99989 * 12 10 8 15 15 H 1.48498 * 109.47007 * 330.00070 * 12 10 8 16 16 C 1.50708 * 109.46585 * 65.36897 * 3 2 1 17 17 C 1.41370 * 128.00962 * 63.87163 * 16 3 2 18 18 C 1.50699 * 126.80640 * 359.97438 * 17 16 3 19 19 N 1.30176 * 106.39678 * 179.97438 * 17 16 3 20 20 O 1.20927 * 111.60419 * 0.02562 * 19 17 16 21 21 C 1.34042 * 111.56254 * 359.75984 * 20 19 17 22 22 C 1.50699 * 126.77390 * 180.28870 * 21 20 19 23 23 H 1.09007 * 109.47199 * 59.99375 * 1 2 3 24 24 H 1.09005 * 109.47693 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47574 * 299.99680 * 1 2 3 26 26 H 1.08997 * 109.46750 * 240.00680 * 2 1 3 27 27 H 1.08994 * 109.46986 * 120.00779 * 2 1 3 28 28 H 0.97006 * 120.00134 * 359.97438 * 7 5 3 29 29 H 0.97006 * 119.99940 * 180.02562 * 11 10 8 30 30 H 1.09003 * 109.47479 * 95.35847 * 18 17 16 31 31 H 1.09001 * 109.47388 * 215.36474 * 18 17 16 32 32 H 1.09006 * 109.46761 * 335.36102 * 18 17 16 33 33 H 1.09000 * 109.47567 * 264.95820 * 22 21 20 34 34 H 1.09007 * 109.47382 * 24.96389 * 22 21 20 35 35 H 1.09000 * 109.47094 * 144.96016 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6003 1.9834 -0.8380 5 6 3.5411 1.4446 -0.1327 6 8 4.2261 1.9419 0.7359 7 7 4.1224 0.8937 -1.2167 8 6 5.4878 0.9006 -1.3403 9 1 6.0978 1.3435 -0.5669 10 6 6.0870 0.3378 -2.4606 11 7 7.3957 0.3440 -2.5787 12 14 5.0320 -0.4288 -3.7980 13 1 4.6863 0.6032 -4.8083 14 1 5.7845 -1.5293 -4.4522 15 1 3.7866 -0.9698 -3.1969 16 6 1.6490 2.1134 1.2916 17 6 2.0619 1.7846 2.6031 18 6 2.9977 0.6732 3.0031 19 7 1.4734 2.6321 3.3969 20 8 0.7800 3.4096 2.7830 21 6 0.8245 3.1741 1.4642 22 6 0.0991 3.9377 0.3864 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3635 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8932 -0.5137 -0.8900 27 1 1.8932 -0.5139 0.8899 28 1 3.5746 0.4956 -1.9113 29 1 7.8140 -0.0485 -3.3610 30 1 4.0092 1.0675 3.1011 31 1 2.6773 0.2539 3.9568 32 1 2.9836 -0.1057 2.2406 33 1 -0.8373 3.4322 0.1504 34 1 -0.1117 4.9484 0.7362 35 1 0.7216 3.9850 -0.5071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337543315.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:08 Heat of formation + Delta-G solvation = 10.257467 kcal Electronic energy + Delta-G solvation = -19220.138303 eV Core-core repulsion = 16221.302607 eV Total energy + Delta-G solvation = -2998.835696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.55661 -38.90680 -35.71387 -34.07034 -33.53802 -32.66705 -31.58171 -28.62019 -28.18919 -27.01617 -24.60838 -22.56124 -21.14148 -19.83216 -19.25452 -18.41657 -17.32908 -16.41133 -15.96674 -15.09723 -14.87308 -14.23718 -13.71368 -13.59140 -13.29303 -13.20073 -13.00015 -12.77069 -12.65972 -12.43899 -12.15008 -12.04040 -11.93837 -11.62482 -11.29878 -11.05088 -10.85969 -10.64082 -10.33236 -10.01024 -9.60704 -9.38140 -8.90798 -8.43637 -8.22230 -6.35351 -3.86857 1.78071 2.62647 2.98211 3.02802 3.11842 3.41502 3.66067 4.05955 4.44171 4.67095 4.76626 5.00788 5.03180 5.19560 5.27082 5.29857 5.40631 5.44364 5.53855 5.62692 5.75711 5.88261 5.91165 5.97729 6.02947 6.06557 6.17500 6.23476 6.33109 6.37164 6.67682 7.52385 8.09673 8.54480 8.65843 8.90349 9.37727 9.77217 10.77635 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.027625 B = 0.006781 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.344206 B = 4128.493740 C = 4431.780646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.027 4.027 4 H 0.093 0.907 5 C 0.455 3.545 6 O -0.565 6.565 7 N -0.586 5.586 8 C -0.305 4.305 9 H 0.120 0.880 10 C 0.043 3.957 11 N -0.880 5.880 12 Si 0.876 3.124 13 H -0.270 1.270 14 H -0.276 1.276 15 H -0.268 1.268 16 C -0.154 4.154 17 C 0.059 3.941 18 C -0.070 4.070 19 N -0.381 5.381 20 O 0.088 5.912 21 C -0.047 4.047 22 C -0.070 4.070 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.370 0.630 29 H 0.274 0.726 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.175 0.376 1.861 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.049 4.049 4 H 0.112 0.888 5 C 0.240 3.760 6 O -0.447 6.447 7 N -0.225 5.225 8 C -0.434 4.434 9 H 0.137 0.863 10 C -0.160 4.160 11 N -0.519 5.519 12 Si 0.703 3.297 13 H -0.196 1.196 14 H -0.201 1.201 15 H -0.194 1.194 16 C -0.158 4.158 17 C -0.100 4.100 18 C -0.127 4.127 19 N -0.089 5.089 20 O 0.025 5.975 21 C -0.110 4.110 22 C -0.127 4.127 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.203 0.797 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.502 0.851 3.641 15.946 hybrid contribution -0.396 -0.870 -1.993 2.210 sum -15.898 -0.019 1.648 15.983 Atomic orbital electron populations 1.21770 0.95442 1.01535 1.01773 1.21615 0.96100 0.94594 1.03232 1.19605 0.95504 0.96437 0.93400 0.88850 1.19529 0.88149 0.84230 0.84075 1.90569 1.64310 1.48700 1.41103 1.42201 1.07794 1.53067 1.19406 1.19434 0.79947 1.36739 1.07273 0.86253 1.25033 0.95678 0.97679 0.97652 1.69620 1.08318 1.44496 1.29512 0.86720 0.80351 0.80020 0.82636 1.19571 1.20104 1.19384 1.20299 1.01082 0.98863 0.95593 1.23245 0.98737 0.98364 0.89643 1.20194 0.97741 0.93850 1.00938 1.73750 1.09707 1.04580 1.20910 1.84735 1.51629 1.44752 1.16390 1.24038 1.02276 0.98550 0.86127 1.20271 0.99533 0.99346 0.93556 0.92628 0.92644 0.92810 0.90992 0.90932 0.79654 0.91571 0.89208 0.91820 0.90383 0.89819 0.90137 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.73 37.16 0.36 -1.27 16 2 C -0.12 -1.64 5.30 -26.73 -0.14 -1.78 16 3 C -0.03 -0.44 2.46 -92.92 -0.23 -0.67 16 4 H 0.09 1.31 7.24 -51.93 -0.38 0.93 16 5 C 0.45 9.93 6.80 -10.99 -0.07 9.85 16 6 O -0.56 -14.56 13.57 5.55 0.08 -14.49 16 7 N -0.59 -13.43 4.95 -10.97 -0.05 -13.48 16 8 C -0.31 -8.39 10.16 -14.93 -0.15 -8.54 16 9 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 10 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 11 N -0.88 -25.26 13.96 55.50 0.77 -24.48 16 12 Si 0.88 18.81 27.74 -169.99 -4.71 14.10 16 13 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 15 H -0.27 -5.18 6.52 56.52 0.37 -4.82 16 16 C -0.15 -2.60 3.53 -104.42 -0.37 -2.97 16 17 C 0.06 1.07 6.66 -82.10 -0.55 0.53 16 18 C -0.07 -1.19 9.01 36.01 0.32 -0.87 16 19 N -0.38 -6.97 12.07 33.42 0.40 -6.57 16 20 O 0.09 1.44 11.20 17.17 0.19 1.64 16 21 C -0.05 -0.69 7.49 -35.30 -0.26 -0.95 16 22 C -0.07 -0.68 10.11 36.01 0.36 -0.32 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.62 7.39 -51.93 -0.38 0.24 16 26 H 0.07 0.99 7.42 -51.93 -0.39 0.60 16 27 H 0.07 1.05 5.76 -51.93 -0.30 0.76 16 28 H 0.37 7.46 5.12 -40.82 -0.21 7.25 16 29 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.09 1.71 7.72 -51.93 -0.40 1.31 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.29 5.74 -51.93 -0.30 0.99 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.85 7.56 -51.93 -0.39 0.46 16 LS Contribution 291.31 15.07 4.39 4.39 Total: -1.00 -32.31 291.31 -4.17 -36.48 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.41 Total: 8.35 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -0.82 Total: -5.94 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 1.12 Total: -44.53 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.27 Total: -12.85 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.71 Total: 14.10 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.31 -4.17 -36.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337543315.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.738 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds