Wall clock time and date at job start Mon Mar 30 2020 04:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31000 * 120.00093 * 2 1 4 4 C 1.50704 * 119.99732 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46689 * 125.00611 * 4 3 2 6 6 H 1.08995 * 110.65442 * 307.91094 * 5 4 3 7 7 N 1.47306 * 110.60312 * 70.82639 * 5 4 3 8 8 C 1.34527 * 106.62063 * 118.30179 * 7 5 4 9 9 O 1.21541 * 123.77005 * 180.20633 * 8 7 5 10 10 N 1.33786 * 112.45596 * 0.38758 * 8 7 5 11 11 C 1.46499 * 124.17708 * 179.86355 * 10 8 7 12 12 C 1.53004 * 109.47198 * 269.69577 * 11 10 8 13 13 C 1.50700 * 109.47208 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 C 1.34769 * 111.64911 * 359.59301 * 10 8 7 22 22 O 1.21231 * 127.15977 * 180.19909 * 21 10 8 23 23 H 1.08994 * 109.47359 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46688 * 299.99904 * 1 2 3 25 25 H 1.08999 * 109.47074 * 59.99363 * 1 2 3 26 26 H 1.08004 * 119.99714 * 180.02562 * 2 1 3 27 27 H 1.07995 * 120.00059 * 0.02562 * 3 2 1 28 28 H 1.08998 * 109.47374 * 5.00294 * 4 3 2 29 29 H 1.08997 * 109.46913 * 244.99939 * 4 3 2 30 30 H 0.97001 * 126.68774 * 298.55947 * 7 5 4 31 31 H 1.09000 * 109.47602 * 149.69524 * 11 10 8 32 32 H 1.08998 * 109.47492 * 29.69513 * 11 10 8 33 33 H 1.08994 * 109.47074 * 60.00190 * 12 11 10 34 34 H 1.08998 * 109.47285 * 300.00026 * 12 11 10 35 35 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6691 1.1344 -0.0006 5 6 4.1786 1.9622 -1.1822 6 1 3.7155 1.6311 -2.1117 7 7 3.9245 3.3958 -0.9586 8 6 5.1261 4.0002 -0.9332 9 8 5.2786 5.1938 -0.7625 10 7 6.1344 3.1409 -1.1207 11 6 7.5483 3.5237 -1.1439 12 6 7.9609 3.8647 -2.5773 13 6 9.4152 4.2590 -2.6011 14 1 9.9880 4.2653 -1.6855 15 6 10.0144 4.6117 -3.7916 16 7 9.3168 4.6044 -4.9065 17 14 11.8173 5.0998 -3.8213 18 1 12.2177 5.4308 -5.2124 19 1 12.0235 6.2852 -2.9509 20 1 12.6440 3.9708 -3.3242 21 6 5.6890 1.8789 -1.2798 22 8 6.3573 0.8843 -1.4633 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 2.0470 -0.9354 -0.0004 27 1 1.6221 2.0698 0.0004 28 1 4.0323 0.1107 -0.0906 29 1 4.0327 1.5685 0.9307 30 1 3.0596 3.8207 -0.8472 31 1 8.1551 2.6952 -0.7785 32 1 7.6997 4.3941 -0.5055 33 1 7.3542 4.6932 -2.9426 34 1 7.8096 2.9943 -3.2158 35 1 8.3807 4.3506 -4.8911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349133204.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:26 Heat of formation + Delta-G solvation = -71.318978 kcal Electronic energy + Delta-G solvation = -18233.978879 eV Core-core repulsion = 15231.605763 eV Total energy + Delta-G solvation = -3002.373116 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.52222 -39.76098 -37.92812 -37.09988 -36.17955 -35.03988 -31.97466 -31.46267 -28.09886 -26.78899 -24.83252 -24.24163 -22.97601 -21.57912 -20.19620 -19.31003 -19.00172 -18.11634 -17.49805 -16.70591 -16.57838 -15.95170 -15.65195 -15.34407 -15.16752 -15.12553 -14.84773 -14.63163 -14.21333 -13.94913 -13.63037 -12.89213 -12.77706 -12.64221 -12.52698 -12.20531 -12.15816 -11.94973 -11.92389 -11.28938 -11.04212 -10.76556 -10.61372 -10.54616 -9.85026 -8.77922 -6.49397 0.47614 1.12369 1.32532 1.52571 1.61850 1.80870 1.88138 2.13339 2.54954 2.85159 3.09495 3.58786 3.82865 3.98900 4.02189 4.24722 4.25750 4.32825 4.46568 4.53633 4.54504 4.69759 4.88465 4.90556 5.01197 5.09361 5.15607 5.23227 5.74635 5.80307 5.82042 5.92840 6.03467 6.06616 6.29448 6.43530 7.03701 7.34249 8.63021 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.045804 B = 0.004230 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.155760 B = 6617.333689 C = 6860.898862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.149 4.149 3 C -0.170 4.170 4 C -0.079 4.079 5 C 0.115 3.885 6 H 0.154 0.846 7 N -0.698 5.698 8 C 0.696 3.304 9 O -0.583 6.583 10 N -0.582 5.582 11 C 0.141 3.859 12 C 0.008 3.992 13 C -0.621 4.621 14 H 0.063 0.937 15 C -0.038 4.038 16 N -0.933 5.933 17 Si 1.124 2.876 18 H -0.283 1.283 19 H -0.266 1.266 20 H -0.264 1.264 21 C 0.514 3.486 22 O -0.498 6.498 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.453 0.547 31 H 0.091 0.909 32 H 0.086 0.914 33 H -0.014 1.014 34 H -0.012 1.012 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.854 -9.174 11.170 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C -0.188 4.188 4 C -0.117 4.117 5 C 0.007 3.993 6 H 0.171 0.829 7 N -0.364 5.364 8 C 0.397 3.603 9 O -0.460 6.460 10 N -0.326 5.326 11 C 0.020 3.980 12 C -0.030 4.030 13 C -0.659 4.659 14 H 0.081 0.919 15 C -0.235 4.235 16 N -0.570 5.570 17 Si 0.943 3.057 18 H -0.208 1.208 19 H -0.191 1.191 20 H -0.189 1.189 21 C 0.303 3.697 22 O -0.369 6.369 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.131 0.869 27 H 0.141 0.859 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.301 0.699 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.004 0.996 34 H 0.007 0.993 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.117 -8.601 10.179 20.913 hybrid contribution -1.514 -0.174 0.712 1.682 sum -17.631 -8.775 10.891 22.505 Atomic orbital electron populations 1.20906 0.92096 1.03051 1.02504 1.23137 0.97085 0.98077 0.98381 1.22551 0.93301 0.99315 1.03661 1.20826 0.95042 1.00445 0.95361 1.22202 0.89858 0.82790 1.04485 0.82856 1.45381 1.06908 1.07717 1.76369 1.16083 0.82250 0.84523 0.77492 1.90976 1.85155 1.13759 1.56071 1.46708 1.09592 1.10434 1.65888 1.21557 0.76087 1.01345 0.98988 1.19350 0.96804 0.94171 0.92632 1.22308 0.95958 1.50333 0.97318 0.91855 1.27626 1.10731 0.93539 0.91635 1.70924 1.09890 1.46559 1.29585 0.82878 0.68738 0.77605 0.76478 1.20803 1.19101 1.18917 1.21616 0.92221 0.81955 0.73956 1.90771 1.65693 1.34296 1.46180 0.91447 0.91172 0.91077 0.86937 0.85851 0.88504 0.89950 0.69906 0.89101 0.89610 0.99575 0.99345 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 10.17 71.24 0.72 -0.35 16 2 C -0.15 -1.59 9.87 25.65 0.25 -1.34 16 3 C -0.17 -1.92 9.05 25.65 0.23 -1.68 16 4 C -0.08 -1.18 5.40 29.85 0.16 -1.02 16 5 C 0.11 2.33 3.63 44.38 0.16 2.49 16 6 H 0.15 2.43 8.14 -2.39 -0.02 2.42 16 7 N -0.70 -15.33 6.13 -459.61 -2.82 -18.15 16 8 C 0.70 24.25 8.62 179.44 1.55 25.80 16 9 O -0.58 -25.20 17.48 -3.85 -0.07 -25.26 16 10 N -0.58 -21.88 2.60 -773.12 -2.01 -23.90 16 11 C 0.14 6.32 5.64 86.38 0.49 6.80 16 12 C 0.01 0.46 4.61 29.85 0.14 0.60 16 13 C -0.62 -36.72 9.11 25.60 0.23 -36.49 16 14 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 15 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 16 N -0.93 -60.03 13.65 21.45 0.29 -59.74 16 17 Si 1.12 51.18 29.90 68.60 2.05 53.23 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 21 C 0.51 16.69 7.65 87.94 0.67 17.36 16 22 O -0.50 -19.09 17.76 -2.88 -0.05 -19.14 16 23 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 25 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.11 1.16 7.84 -2.91 -0.02 1.14 16 27 H 0.12 1.09 8.05 -2.91 -0.02 1.07 16 28 H 0.10 1.45 7.79 -2.39 -0.02 1.43 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.45 6.84 8.96 -92.71 -0.83 6.01 16 31 H 0.09 3.91 8.00 -2.39 -0.02 3.89 16 32 H 0.09 3.83 7.85 -2.39 -0.02 3.81 16 33 H -0.01 -0.85 8.01 -2.39 -0.02 -0.87 16 34 H -0.01 -0.70 8.01 -2.39 -0.02 -0.72 16 35 H 0.25 16.58 7.22 -92.70 -0.67 15.91 16 Total: -1.00 -77.95 308.24 2.83 -75.13 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.36 Total: 7.46 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 5.07 Total: 10.37 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -4.54 Total: -101.78 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -0.12 Total: -44.40 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -77.95 2.83 -75.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349133204.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.808 kcal (2) G-P(sol) polarization free energy of solvation -77.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds