Wall clock time and date at job start Mon Mar 30 2020 04:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47408 * 2 1 4 4 N 1.29932 * 125.36948 * 89.99562 * 3 2 1 5 5 C 1.36073 * 108.48912 * 179.97438 * 4 3 2 6 6 C 1.47323 * 126.45700 * 180.02562 * 5 4 3 7 7 O 1.21650 * 119.99895 * 174.67508 * 6 5 4 8 8 N 1.34773 * 120.00722 * 354.67995 * 6 5 4 9 9 C 1.36941 * 120.00667 * 184.14197 * 8 6 5 10 10 H 1.07995 * 119.99668 * 324.95786 * 9 8 6 11 11 C 1.38985 * 119.99967 * 144.94966 * 9 8 6 12 12 N 1.31405 * 120.00492 * 335.43419 * 11 9 8 13 13 Si 1.86799 * 119.99808 * 155.43238 * 11 9 8 14 14 H 1.48498 * 109.47370 * 89.99922 * 13 11 9 15 15 H 1.48509 * 109.47067 * 210.00184 * 13 11 9 16 16 H 1.48497 * 109.47113 * 329.99978 * 13 11 9 17 17 C 1.46502 * 119.99429 * 3.86369 * 8 6 5 18 18 C 1.53004 * 109.47176 * 83.75194 * 17 8 6 19 19 C 1.36190 * 107.08383 * 0.26527 * 5 4 3 20 20 C 1.50695 * 126.52842 * 179.73653 * 19 5 4 21 21 O 1.34053 * 125.37035 * 269.97967 * 3 2 1 22 22 H 1.08992 * 109.46876 * 299.99726 * 1 2 3 23 23 H 1.08997 * 109.46966 * 59.99994 * 1 2 3 24 24 H 1.08994 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47183 * 240.00398 * 2 1 3 26 26 H 1.08995 * 109.47449 * 120.00205 * 2 1 3 27 27 H 0.96994 * 120.00413 * 180.02562 * 12 11 9 28 28 H 1.08995 * 109.47243 * 203.75504 * 17 8 6 29 29 H 1.09000 * 109.47396 * 323.75520 * 17 8 6 30 30 H 1.09000 * 109.46691 * 59.99895 * 18 17 8 31 31 H 1.08996 * 109.47199 * 179.97438 * 18 17 8 32 32 H 1.09000 * 109.47028 * 299.99883 * 18 17 8 33 33 H 1.09005 * 109.47434 * 90.00544 * 20 19 5 34 34 H 1.09006 * 109.47150 * 210.00086 * 20 19 5 35 35 H 1.08994 * 109.47713 * 330.00241 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2831 2.1299 1.0595 5 6 2.7178 3.3573 0.6644 6 6 3.1124 4.4712 1.5441 7 8 3.5765 5.4889 1.0658 8 7 2.9593 4.3629 2.8787 9 6 3.2462 5.4285 3.6896 10 1 4.0597 6.0934 3.4399 11 6 2.4903 5.6542 4.8339 12 7 1.2602 5.1982 4.9094 13 14 3.2230 6.6058 6.2646 14 1 2.9403 8.0534 6.0929 15 1 2.6196 6.1309 7.5358 16 1 4.6916 6.3894 6.3027 17 6 2.4803 3.1070 3.4614 18 6 3.6570 2.1453 3.6384 19 6 2.7141 3.3637 -0.6975 20 6 3.1121 4.5107 -1.5901 21 8 2.2915 2.1522 -1.0931 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.7325 5.3561 5.7078 28 1 2.0252 3.3069 4.4314 29 1 1.7405 2.6578 2.7987 30 1 4.3967 2.5945 4.3011 31 1 3.3007 1.2111 4.0724 32 1 4.1120 1.9455 2.6683 33 1 4.1780 4.4475 -1.8097 34 1 2.5461 4.4606 -2.5203 35 1 2.9003 5.4538 -1.0863 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350079564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:07 Heat of formation + Delta-G solvation = -30.603225 kcal Electronic energy + Delta-G solvation = -19220.415838 eV Core-core repulsion = 16219.808290 eV Total energy + Delta-G solvation = -3000.607549 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.34141 -40.25643 -37.03450 -35.94588 -34.95346 -33.88259 -32.45514 -31.18661 -28.51083 -26.96907 -25.21032 -23.98598 -23.54567 -22.28551 -20.53388 -18.95394 -18.10492 -17.91069 -17.16485 -16.60285 -16.10354 -15.68372 -15.47089 -15.22570 -14.63176 -14.53601 -14.30283 -14.09997 -13.64212 -13.51793 -13.41235 -13.21581 -12.88564 -12.71242 -12.56057 -12.44677 -12.21192 -12.11606 -12.00467 -11.83038 -11.35151 -10.71277 -10.53103 -9.76101 -9.44266 -8.41659 -6.07319 0.19664 1.15767 1.39881 1.42492 1.54473 1.58443 2.24443 2.46253 2.85414 3.03907 3.15654 3.76280 3.95789 4.14609 4.29641 4.35101 4.44855 4.47793 4.59504 4.66244 4.72563 4.86693 4.93246 4.98907 5.06317 5.07599 5.19143 5.21053 5.33814 5.37733 5.43337 5.70026 6.14642 6.43279 6.68200 7.09146 7.38967 8.00249 8.61994 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.026540 B = 0.007167 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.763614 B = 3905.588786 C = 4555.050263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.020 4.020 3 C 0.184 3.816 4 N -0.470 5.470 5 C -0.077 4.077 6 C 0.507 3.493 7 O -0.618 6.618 8 N -0.427 5.427 9 C -0.352 4.352 10 H 0.071 0.929 11 C 0.006 3.994 12 N -0.880 5.880 13 Si 0.988 3.012 14 H -0.273 1.273 15 H -0.265 1.265 16 H -0.266 1.266 17 C 0.099 3.901 18 C -0.131 4.131 19 C 0.011 3.989 20 C -0.060 4.060 21 O -0.197 6.197 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.103 0.897 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.277 0.723 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 -12.194 -8.207 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.058 4.058 3 C -0.025 4.025 4 N -0.200 5.200 5 C -0.196 4.196 6 C 0.297 3.703 7 O -0.506 6.506 8 N -0.143 5.143 9 C -0.480 4.480 10 H 0.089 0.911 11 C -0.198 4.198 12 N -0.516 5.516 13 Si 0.810 3.190 14 H -0.198 1.198 15 H -0.189 1.189 16 H -0.190 1.190 17 C -0.024 4.024 18 C -0.189 4.189 19 C -0.046 4.046 20 C -0.116 4.116 21 O -0.085 6.085 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.121 0.879 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.275 -11.936 -7.639 14.229 hybrid contribution 0.279 1.042 0.181 1.094 sum -0.996 -10.894 -7.458 13.239 Atomic orbital electron populations 1.21779 0.92456 1.04340 1.01885 1.20388 0.97190 0.81166 1.07019 1.27493 0.98926 0.98104 0.77947 1.70967 1.16403 1.02729 1.29938 1.21726 1.10347 0.94385 0.93153 1.17473 0.84577 0.85526 0.82749 1.90525 1.52260 1.32458 1.75327 1.43662 1.55178 1.11976 1.03459 1.19489 1.15106 1.08279 1.05100 0.91134 1.26238 0.93906 0.98003 1.01606 1.70085 1.07110 1.45199 1.29253 0.85061 0.78931 0.78092 0.76960 1.19822 1.18897 1.19010 1.21861 0.97175 0.82903 1.00500 1.21836 0.98044 0.98917 1.00128 1.23954 0.99847 0.86582 0.94203 1.20459 1.03160 0.90505 0.97520 1.84254 1.64539 1.21686 1.37993 0.93798 0.92566 0.87879 0.86012 0.86481 0.91350 0.90752 0.89432 0.94717 0.90195 0.94232 0.88392 0.87470 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.90 71.98 0.71 -1.78 16 2 C -0.02 -0.37 6.56 29.85 0.20 -0.18 16 3 C 0.18 5.75 7.56 88.39 0.67 6.42 16 4 N -0.47 -18.90 6.65 -293.05 -1.95 -20.84 16 5 C -0.08 -3.57 6.49 40.40 0.26 -3.31 16 6 C 0.51 28.39 7.57 86.63 0.66 29.05 16 7 O -0.62 -37.01 14.70 -4.19 -0.06 -37.07 16 8 N -0.43 -24.37 2.55 -639.35 -1.63 -26.00 16 9 C -0.35 -21.13 8.95 84.07 0.75 -20.38 16 10 H 0.07 4.44 7.70 -2.91 -0.02 4.42 16 11 C 0.01 0.35 4.83 84.94 0.41 0.76 16 12 N -0.88 -49.58 11.57 21.67 0.25 -49.33 16 13 Si 0.99 43.16 29.62 68.60 2.03 45.19 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 15 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 17 C 0.10 4.92 5.24 86.38 0.45 5.37 16 18 C -0.13 -5.49 9.73 71.98 0.70 -4.79 16 19 C 0.01 0.40 7.44 25.21 0.19 0.59 16 20 C -0.06 -1.90 9.82 71.23 0.70 -1.20 16 21 O -0.20 -6.41 10.73 0.23 0.00 -6.41 16 22 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.07 3.98 5.53 -2.39 -0.01 3.96 16 29 H 0.09 4.31 5.27 -2.39 -0.01 4.29 16 30 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.04 1.66 7.09 -2.39 -0.02 1.64 16 33 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 34 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.08 3.15 6.61 -2.39 -0.02 3.13 16 Total: -1.00 -74.32 295.01 5.44 -68.88 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.09 Total: 15.02 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 5.70 Total: 10.57 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -3.33 Total: -96.18 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.06 Total: -43.48 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -74.32 5.44 -68.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350079564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.277 kcal (2) G-P(sol) polarization free energy of solvation -74.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds