Wall clock time and date at job start Mon Mar 30 2020 04:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53007 * 110.53938 * 187.12725 * 3 2 1 5 5 C 1.52997 * 117.49876 * 253.74729 * 4 3 2 6 6 C 1.52994 * 117.49844 * 185.08575 * 4 3 2 7 7 N 1.47309 * 110.60098 * 310.12895 * 3 2 1 8 8 C 1.34531 * 106.62521 * 118.52300 * 7 3 2 9 9 O 1.21535 * 123.77132 * 179.97438 * 8 7 3 10 10 N 1.33796 * 112.45068 * 0.02562 * 8 7 3 11 11 C 1.46498 * 124.17097 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47207 * 269.95623 * 11 10 8 13 13 H 1.08004 * 119.99930 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99896 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00250 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99908 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47041 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47591 * 119.99990 * 16 14 12 19 19 H 1.48502 * 109.47232 * 239.99929 * 16 14 12 20 20 C 1.34760 * 111.64667 * 359.97438 * 10 8 7 21 21 O 1.21240 * 127.15669 * 179.97438 * 20 10 8 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.08995 * 115.54157 * 39.42111 * 4 3 2 28 28 H 1.08998 * 117.50231 * 359.97438 * 5 4 3 29 29 H 1.09000 * 117.49404 * 145.02064 * 5 4 3 30 30 H 1.08997 * 117.49964 * 214.97929 * 6 4 3 31 31 H 1.08996 * 117.50415 * 359.97438 * 6 4 3 32 32 H 0.97004 * 126.68709 * 298.50395 * 7 3 2 33 33 H 1.08996 * 109.47575 * 29.96182 * 11 10 8 34 34 H 1.09009 * 109.46896 * 149.96033 * 11 10 8 35 35 H 0.97001 * 120.00231 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5594 1.4745 -0.1778 5 6 4.4072 1.8149 1.0495 6 6 4.2533 2.8347 -0.0816 7 7 1.3750 2.2273 -1.0543 8 6 0.7085 3.2178 -0.4342 9 8 0.0476 4.0552 -1.0165 10 7 0.8555 3.1785 0.8951 11 6 0.2406 4.1344 1.8195 12 6 1.1752 5.2967 2.0354 13 1 2.1314 5.3211 1.5338 14 6 0.8096 6.3288 2.8733 15 7 -0.3544 6.2987 3.4845 16 14 1.9678 7.7699 3.1404 17 1 3.2049 7.5648 2.3447 18 1 1.3034 9.0257 2.7084 19 1 2.3164 7.8645 4.5808 20 6 1.6380 2.1506 1.2785 21 8 1.9551 1.8542 2.4106 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.9652 0.7513 -0.8851 28 1 3.8827 2.0163 1.9835 29 1 5.3711 1.3158 1.1493 30 1 5.1160 3.0062 -0.7254 31 1 3.6275 3.7067 0.1078 32 1 1.4109 2.0624 -2.0095 33 1 -0.6973 4.4957 1.3980 34 1 0.0452 3.6434 2.7730 35 1 -0.6118 7.0250 4.0737 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350668164.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:47 Heat of formation + Delta-G solvation = -20.661988 kcal Electronic energy + Delta-G solvation = -19739.477167 eV Core-core repulsion = 16739.300703 eV Total energy + Delta-G solvation = -3000.176464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.12909 -38.20846 -37.01697 -35.37644 -34.53262 -32.80113 -31.80690 -27.88728 -27.13641 -23.81559 -22.90597 -22.21005 -21.75837 -20.64114 -19.42702 -17.38340 -17.15835 -16.24730 -15.57081 -15.30731 -14.92786 -14.75133 -14.25539 -14.01981 -13.85980 -13.40680 -13.22359 -12.55947 -12.32530 -11.71351 -11.59498 -11.54370 -11.39252 -11.12961 -11.00873 -10.77723 -10.56044 -10.30052 -10.17204 -9.97447 -9.81426 -9.38646 -9.07755 -8.54441 -8.52251 -6.14558 -4.19614 2.22495 2.93771 3.28064 3.34592 3.39296 3.61345 3.79138 3.89857 4.24522 4.39348 4.62999 4.79345 5.05251 5.10827 5.20342 5.21939 5.28220 5.44277 5.66595 5.82397 5.82876 5.90214 5.95078 6.06129 6.21911 6.23480 6.38656 6.62906 7.05312 7.20384 7.24434 7.78542 7.97621 8.02416 8.11022 8.74296 8.88555 9.45327 10.94908 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.008192 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.734866 B = 3417.130682 C = 3781.984675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C 0.147 3.853 4 C -0.158 4.158 5 C -0.177 4.177 6 C -0.173 4.173 7 N -0.728 5.728 8 C 0.701 3.299 9 O -0.543 6.543 10 N -0.555 5.555 11 C 0.248 3.752 12 C -0.532 4.532 13 H 0.060 0.940 14 C 0.065 3.935 15 N -0.890 5.890 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.530 3.470 21 O -0.470 6.470 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.430 0.570 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.431 -12.805 -8.006 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.148 4.148 3 C 0.056 3.944 4 C -0.177 4.177 5 C -0.214 4.214 6 C -0.210 4.210 7 N -0.392 5.392 8 C 0.402 3.598 9 O -0.416 6.416 10 N -0.299 5.299 11 C 0.130 3.870 12 C -0.570 4.570 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.207 1.207 20 C 0.316 3.684 21 O -0.341 6.341 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.272 0.728 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.034 -12.295 -7.460 15.596 hybrid contribution 0.632 0.805 -0.316 1.071 sum 6.666 -11.491 -7.776 15.393 Atomic orbital electron populations 1.21818 0.94840 1.02115 1.02737 1.21645 0.96806 0.92474 1.03863 1.20980 0.92546 0.93741 0.87170 1.22254 0.90403 1.01202 1.03828 1.23463 1.01021 1.02252 0.94672 1.22989 1.02660 0.92986 1.02332 1.45608 1.53639 1.31159 1.08818 1.15971 0.80071 0.81597 0.82140 1.90955 1.43575 1.38958 1.68123 1.46823 1.46028 1.28943 1.08087 1.19605 0.94452 0.85890 0.87020 1.21261 1.03257 1.04447 1.28069 0.92198 1.24893 0.95477 0.98261 0.95127 1.69928 1.20312 1.33044 1.29563 0.86354 0.80735 0.81860 0.78002 1.19666 1.20693 1.20710 1.20422 0.77762 0.80548 0.89683 1.90673 1.54081 1.67801 1.21576 0.92006 0.92622 0.91916 0.89541 0.90280 0.86423 0.86133 0.88442 0.88431 0.88402 0.72750 0.92862 0.93064 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.36 37.16 0.35 -1.55 16 2 C -0.11 -1.23 5.33 -26.74 -0.14 -1.38 16 3 C 0.15 2.11 0.96 -132.09 -0.13 1.98 16 4 C -0.16 -1.98 5.44 -90.62 -0.49 -2.47 16 5 C -0.18 -2.47 9.73 -26.69 -0.26 -2.73 16 6 C -0.17 -2.46 9.89 -26.70 -0.26 -2.73 16 7 N -0.73 -10.82 4.78 -52.94 -0.25 -11.07 16 8 C 0.70 14.49 8.50 -88.01 -0.75 13.74 16 9 O -0.54 -13.19 17.48 5.34 0.09 -13.10 16 10 N -0.56 -12.38 2.59 -122.02 -0.32 -12.70 16 11 C 0.25 6.61 5.45 -5.19 -0.03 6.58 16 12 C -0.53 -15.23 9.39 -34.44 -0.32 -15.55 16 13 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 14 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 15 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 16 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.53 10.39 4.72 -10.56 -0.05 10.35 16 21 O -0.47 -10.20 15.44 5.59 0.09 -10.12 16 22 H 0.06 0.75 7.42 -51.93 -0.39 0.37 16 23 H 0.05 0.82 7.42 -51.93 -0.39 0.43 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.12 2.10 5.21 -51.93 -0.27 1.83 16 29 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.10 1.77 7.95 -51.93 -0.41 1.35 16 32 H 0.43 4.98 8.96 -40.82 -0.37 4.61 16 33 H 0.05 1.52 7.86 -51.93 -0.41 1.11 16 34 H 0.05 1.43 8.00 -51.92 -0.42 1.01 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 296.46 15.07 4.47 4.47 Total: -1.00 -32.66 296.46 -7.12 -39.77 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.72 Total: 3.36 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -2.18 Total: 8.01 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.17 Total: -49.33 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.18 Total: -23.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.66 -7.12 -39.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350668164.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.111 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds