Wall clock time and date at job start Mon Mar 30 2020 04:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53007 * 110.53938 * 187.12725 * 3 2 1 5 5 C 1.52997 * 117.49876 * 253.74729 * 4 3 2 6 6 C 1.52994 * 117.49844 * 185.08575 * 4 3 2 7 7 N 1.47309 * 110.60098 * 310.12895 * 3 2 1 8 8 C 1.34531 * 106.62521 * 118.52300 * 7 3 2 9 9 O 1.21535 * 123.77132 * 179.97438 * 8 7 3 10 10 N 1.33796 * 112.45068 * 0.02562 * 8 7 3 11 11 C 1.46498 * 124.17097 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47207 * 269.95623 * 11 10 8 13 13 H 1.08004 * 119.99930 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99896 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00250 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99908 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47041 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47591 * 119.99990 * 16 14 12 19 19 H 1.48502 * 109.47232 * 239.99929 * 16 14 12 20 20 C 1.34760 * 111.64667 * 359.97438 * 10 8 7 21 21 O 1.21240 * 127.15669 * 179.97438 * 20 10 8 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.08995 * 115.54157 * 39.42111 * 4 3 2 28 28 H 1.08998 * 117.50231 * 359.97438 * 5 4 3 29 29 H 1.09000 * 117.49404 * 145.02064 * 5 4 3 30 30 H 1.08997 * 117.49964 * 214.97929 * 6 4 3 31 31 H 1.08996 * 117.50415 * 359.97438 * 6 4 3 32 32 H 0.97004 * 126.68709 * 298.50395 * 7 3 2 33 33 H 1.08996 * 109.47575 * 29.96182 * 11 10 8 34 34 H 1.09009 * 109.46896 * 149.96033 * 11 10 8 35 35 H 0.97001 * 120.00231 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5594 1.4745 -0.1778 5 6 4.4072 1.8149 1.0495 6 6 4.2533 2.8347 -0.0816 7 7 1.3750 2.2273 -1.0543 8 6 0.7085 3.2178 -0.4342 9 8 0.0476 4.0552 -1.0165 10 7 0.8555 3.1785 0.8951 11 6 0.2406 4.1344 1.8195 12 6 1.1752 5.2967 2.0354 13 1 2.1314 5.3211 1.5338 14 6 0.8096 6.3288 2.8733 15 7 -0.3544 6.2987 3.4845 16 14 1.9678 7.7699 3.1404 17 1 3.2049 7.5648 2.3447 18 1 1.3034 9.0257 2.7084 19 1 2.3164 7.8645 4.5808 20 6 1.6380 2.1506 1.2785 21 8 1.9551 1.8542 2.4106 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.9652 0.7513 -0.8851 28 1 3.8827 2.0163 1.9835 29 1 5.3711 1.3158 1.1493 30 1 5.1160 3.0062 -0.7254 31 1 3.6275 3.7067 0.1078 32 1 1.4109 2.0624 -2.0095 33 1 -0.6973 4.4957 1.3980 34 1 0.0452 3.6434 2.7730 35 1 -0.6118 7.0250 4.0737 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350668164.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:47 Heat of formation + Delta-G solvation = -43.775296 kcal Electronic energy + Delta-G solvation = -19740.479435 eV Core-core repulsion = 16739.300703 eV Total energy + Delta-G solvation = -3001.178732 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.65647 -39.81106 -38.41707 -36.94512 -36.14397 -34.71939 -33.17251 -29.91480 -28.40284 -25.79090 -24.48216 -23.34465 -22.78640 -22.19334 -20.88886 -19.08540 -18.91985 -17.95847 -17.24460 -16.78606 -16.71841 -16.05946 -15.87964 -15.54255 -15.15458 -14.82518 -14.61387 -14.34336 -13.74745 -13.66268 -13.23008 -12.79314 -12.72690 -12.59290 -12.53668 -12.35533 -12.17309 -11.95802 -11.76456 -11.37401 -11.20372 -10.97532 -10.74187 -10.60161 -10.32422 -8.36431 -6.51353 0.65889 1.31798 1.34544 1.39027 1.48987 2.10157 2.23346 2.33644 2.70602 2.96196 3.01915 3.41953 3.70010 4.00862 4.05681 4.17787 4.24380 4.39648 4.45840 4.64251 4.76323 4.77422 4.91460 4.97976 4.98781 4.99763 5.12127 5.14617 5.25763 5.28099 5.53540 5.80319 5.90480 6.32223 6.47636 6.58229 7.14478 7.27455 8.73791 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.008192 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.734866 B = 3417.130682 C = 3781.984675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 C 0.156 3.844 4 C -0.135 4.135 5 C -0.183 4.183 6 C -0.185 4.185 7 N -0.694 5.694 8 C 0.697 3.303 9 O -0.588 6.588 10 N -0.572 5.572 11 C 0.264 3.736 12 C -0.552 4.552 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.921 5.921 16 Si 0.973 3.027 17 H -0.268 1.268 18 H -0.271 1.271 19 H -0.269 1.269 20 C 0.518 3.482 21 O -0.499 6.499 22 H 0.059 0.941 23 H 0.015 0.985 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.131 0.869 27 H 0.174 0.826 28 H 0.079 0.921 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.049 0.951 32 H 0.451 0.549 33 H 0.023 0.977 34 H 0.027 0.973 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.865 -14.660 -9.847 19.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.141 4.141 3 C 0.066 3.934 4 C -0.153 4.153 5 C -0.220 4.220 6 C -0.223 4.223 7 N -0.359 5.359 8 C 0.399 3.601 9 O -0.466 6.466 10 N -0.315 5.315 11 C 0.144 3.856 12 C -0.590 4.590 13 H 0.070 0.930 14 C -0.187 4.187 15 N -0.560 5.560 16 Si 0.796 3.204 17 H -0.192 1.192 18 H -0.196 1.196 19 H -0.194 1.194 20 C 0.307 3.693 21 O -0.371 6.371 22 H 0.078 0.922 23 H 0.035 0.965 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.149 0.851 27 H 0.192 0.808 28 H 0.097 0.903 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.068 0.932 32 H 0.298 0.702 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.497 -14.218 -9.338 19.014 hybrid contribution -0.165 1.337 0.314 1.383 sum 8.332 -12.881 -9.024 17.798 Atomic orbital electron populations 1.21857 0.95792 1.03394 1.00701 1.21779 0.95899 0.89732 1.06660 1.21238 0.94307 0.94723 0.83146 1.22518 0.88082 1.00979 1.03769 1.23426 1.02581 1.02826 0.93187 1.22963 1.03571 0.92095 1.03638 1.45370 1.51662 1.29013 1.09872 1.16071 0.80235 0.82272 0.81562 1.90913 1.45799 1.41117 1.68724 1.46746 1.46859 1.29327 1.08607 1.18982 0.93497 0.86371 0.86731 1.21469 1.03263 1.05632 1.28681 0.92993 1.25862 0.97220 1.01100 0.94491 1.70033 1.21891 1.34168 1.29874 0.85284 0.78497 0.78115 0.78466 1.19227 1.19570 1.19359 1.21436 0.76596 0.79894 0.91409 1.90648 1.54695 1.68354 1.23451 0.92207 0.96535 0.89029 0.88948 0.85071 0.80828 0.90281 0.84910 0.85271 0.93222 0.70182 0.95852 0.95528 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.36 71.98 0.67 -2.85 16 2 C -0.10 -1.90 5.33 30.59 0.16 -1.73 16 3 C 0.16 4.13 0.96 2.98 0.00 4.14 16 4 C -0.13 -2.83 5.44 -10.79 -0.06 -2.89 16 5 C -0.18 -4.70 9.73 30.62 0.30 -4.40 16 6 C -0.19 -4.92 9.89 30.62 0.30 -4.61 16 7 N -0.69 -19.45 4.78 -439.82 -2.10 -21.55 16 8 C 0.70 29.66 8.50 179.44 1.53 31.18 16 9 O -0.59 -29.81 17.48 -3.83 -0.07 -29.88 16 10 N -0.57 -26.92 2.59 -777.21 -2.01 -28.93 16 11 C 0.26 15.17 5.45 85.63 0.47 15.63 16 12 C -0.55 -33.32 9.39 25.60 0.24 -33.08 16 13 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 14 C 0.01 0.80 5.46 84.65 0.46 1.26 16 15 N -0.92 -56.39 13.29 21.45 0.28 -56.11 16 16 Si 0.97 45.88 29.54 68.60 2.03 47.91 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 C 0.52 20.87 4.72 87.94 0.42 21.29 16 21 O -0.50 -22.64 15.44 -2.91 -0.04 -22.69 16 22 H 0.06 1.33 7.42 -2.39 -0.02 1.31 16 23 H 0.02 0.47 7.42 -2.39 -0.02 0.45 16 24 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.17 1.91 8.14 -2.39 -0.02 1.90 16 28 H 0.08 2.77 5.21 -2.39 -0.01 2.76 16 29 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.05 1.82 7.95 -2.39 -0.02 1.80 16 32 H 0.45 8.96 8.96 -92.71 -0.83 8.13 16 33 H 0.02 1.45 7.86 -2.39 -0.02 1.43 16 34 H 0.03 1.62 8.00 -2.38 -0.02 1.60 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -78.17 296.46 2.85 -75.32 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.28 Total: 11.99 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: 4.49 Total: 23.94 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -3.83 Total: -106.59 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -0.11 Total: -52.56 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -78.17 2.85 -75.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350668164.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.541 kcal (2) G-P(sol) polarization free energy of solvation -78.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds