Wall clock time and date at job start Mon Mar 30 2020 04:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.31000 * 119.99906 * 2 1 4 4 C 1.50704 * 119.99732 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.46689 * 125.00611 * 4 3 2 6 6 H 1.08995 * 110.65442 * 307.91094 * 5 4 3 7 7 N 1.47306 * 110.60312 * 70.82639 * 5 4 3 8 8 C 1.34527 * 106.62063 * 118.30179 * 7 5 4 9 9 O 1.21541 * 123.77005 * 180.20633 * 8 7 5 10 10 N 1.33786 * 112.45596 * 0.38758 * 8 7 5 11 11 C 1.46499 * 124.17708 * 179.86355 * 10 8 7 12 12 C 1.53004 * 109.47198 * 269.69577 * 11 10 8 13 13 C 1.50700 * 109.47208 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 C 1.34769 * 111.64911 * 359.59301 * 10 8 7 22 22 O 1.21229 * 127.16399 * 180.27127 * 21 10 8 23 23 H 1.09001 * 109.47648 * 300.00196 * 1 2 3 24 24 H 1.09002 * 109.47192 * 60.00479 * 1 2 3 25 25 H 1.09003 * 109.46968 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.00097 * 179.97438 * 2 1 3 27 27 H 1.07995 * 120.00059 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47374 * 5.00294 * 4 3 2 29 29 H 1.08997 * 109.46913 * 244.99939 * 4 3 2 30 30 H 0.97001 * 126.68774 * 298.55947 * 7 5 4 31 31 H 1.09000 * 109.47602 * 149.69524 * 11 10 8 32 32 H 1.08998 * 109.47492 * 29.69513 * 11 10 8 33 33 H 1.08994 * 109.47074 * 60.00190 * 12 11 10 34 34 H 1.08998 * 109.47285 * 300.00026 * 12 11 10 35 35 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4084 2.4396 -0.0006 5 6 1.8696 3.2952 1.1810 6 1 1.8137 2.7291 2.1107 7 7 3.2384 3.7920 0.9582 8 6 3.1609 5.1348 0.9322 9 8 4.1186 5.8635 0.7619 10 7 1.9126 5.5784 1.1185 11 6 1.5371 6.9942 1.1408 12 6 1.6250 7.5227 2.5740 13 6 1.2393 8.9793 2.5969 14 1 0.9591 9.4782 1.6808 15 6 1.2442 9.6752 3.7871 16 7 1.5859 9.0679 4.9025 17 14 0.7654 11.4806 3.8156 18 1 0.8509 11.9935 5.2065 19 1 1.6896 12.2515 2.9456 20 1 -0.6253 11.6318 3.3174 21 6 1.0422 4.5618 1.2774 22 8 -0.1537 4.6431 1.4587 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.0470 -0.9353 0.0004 27 1 3.2419 1.1345 0.0004 28 1 0.3401 2.2424 0.0887 29 1 1.6032 2.9712 -0.9320 30 1 4.0388 3.2553 0.8477 31 1 0.5165 7.1054 0.7746 32 1 2.2157 7.5603 0.5027 33 1 2.6455 7.4117 2.9402 34 1 0.9464 6.9568 3.2122 35 1 1.8341 8.1302 4.8877 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358736396.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:29 Heat of formation + Delta-G solvation = -68.777149 kcal Electronic energy + Delta-G solvation = -18396.815018 eV Core-core repulsion = 15394.552124 eV Total energy + Delta-G solvation = -3002.262894 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.52547 -39.76315 -38.05964 -37.11441 -36.32705 -35.04213 -31.74788 -31.08724 -28.05971 -26.88649 -25.43442 -24.23685 -23.23398 -21.50215 -19.33343 -19.28977 -18.98546 -18.07228 -17.54676 -16.71340 -16.65581 -16.33303 -15.65159 -15.57880 -15.32803 -15.12649 -14.72254 -14.34574 -14.28948 -13.93953 -13.67294 -12.85757 -12.76626 -12.63973 -12.51775 -12.22895 -12.19208 -11.92415 -11.72309 -11.28046 -11.04078 -10.76033 -10.61014 -10.54314 -9.87414 -8.77537 -6.49002 0.47572 1.12570 1.33389 1.52926 1.62178 1.81190 1.88125 2.13429 2.55273 2.85295 3.09925 3.59458 3.84136 3.98863 4.04293 4.24978 4.26728 4.32841 4.46380 4.53798 4.54914 4.57264 4.84650 4.87049 5.09510 5.14287 5.17695 5.24599 5.74779 5.77214 5.82264 5.93347 6.03442 6.06899 6.29407 6.43784 7.03786 7.34628 8.63340 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.039957 B = 0.004547 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.577781 B = 6156.507377 C = 6530.699207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.145 4.145 3 C -0.172 4.172 4 C -0.087 4.087 5 C 0.115 3.885 6 H 0.154 0.846 7 N -0.697 5.697 8 C 0.696 3.304 9 O -0.583 6.583 10 N -0.581 5.581 11 C 0.141 3.859 12 C 0.008 3.992 13 C -0.621 4.621 14 H 0.063 0.937 15 C -0.038 4.038 16 N -0.933 5.933 17 Si 1.124 2.876 18 H -0.283 1.283 19 H -0.266 1.266 20 H -0.264 1.264 21 C 0.514 3.486 22 O -0.497 6.497 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.453 0.547 31 H 0.091 0.909 32 H 0.085 0.915 33 H -0.014 1.014 34 H -0.011 1.011 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 -19.513 -11.156 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C -0.190 4.190 4 C -0.125 4.125 5 C 0.007 3.993 6 H 0.171 0.829 7 N -0.364 5.364 8 C 0.396 3.604 9 O -0.460 6.460 10 N -0.326 5.326 11 C 0.020 3.980 12 C -0.030 4.030 13 C -0.659 4.659 14 H 0.081 0.919 15 C -0.235 4.235 16 N -0.569 5.569 17 Si 0.943 3.057 18 H -0.208 1.208 19 H -0.191 1.191 20 H -0.189 1.189 21 C 0.302 3.698 22 O -0.369 6.369 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.301 0.699 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.004 0.996 34 H 0.007 0.993 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.397 -17.717 -10.167 20.431 hybrid contribution 0.699 -1.444 -0.711 1.754 sum 0.302 -19.161 -10.878 22.035 Atomic orbital electron populations 1.21004 0.93363 1.03020 1.02184 1.23077 0.96506 0.98320 0.98379 1.22601 1.00212 0.92401 1.03752 1.20935 1.01800 0.94304 0.95417 1.22181 0.80275 0.92387 1.04433 0.82923 1.45383 1.10935 1.03672 1.76376 1.16087 0.82370 0.84413 0.77497 1.90976 1.38736 1.60175 1.56075 1.46706 1.09825 1.10179 1.65900 1.21558 1.01374 0.76049 0.98993 1.19357 0.94381 0.96640 0.92636 1.22302 1.50404 0.95873 0.97305 0.91859 1.27619 0.93456 1.10785 0.91625 1.70926 1.43858 1.12598 1.29562 0.82875 0.77589 0.68753 0.76465 1.20814 1.19123 1.18921 1.21612 0.87015 0.87174 0.73968 1.90768 1.13602 1.86314 1.46183 0.91503 0.91528 0.91137 0.85562 0.85514 0.88276 0.89958 0.69889 0.89091 0.89618 0.99568 0.99323 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.65 71.24 0.62 -0.89 16 2 C -0.14 -1.50 10.26 25.65 0.26 -1.24 16 3 C -0.17 -1.91 9.41 25.65 0.24 -1.67 16 4 C -0.09 -1.33 5.20 29.85 0.16 -1.17 16 5 C 0.12 2.36 3.63 44.38 0.16 2.52 16 6 H 0.15 2.45 8.14 -2.39 -0.02 2.43 16 7 N -0.70 -15.37 6.13 -459.61 -2.82 -18.18 16 8 C 0.70 24.28 8.62 179.44 1.55 25.82 16 9 O -0.58 -25.21 17.48 -3.85 -0.07 -25.28 16 10 N -0.58 -21.89 2.60 -773.12 -2.01 -23.90 16 11 C 0.14 6.31 5.64 86.38 0.49 6.80 16 12 C 0.01 0.43 4.61 29.85 0.14 0.57 16 13 C -0.62 -36.65 9.11 25.60 0.23 -36.42 16 14 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 15 C -0.04 -2.24 5.46 84.65 0.46 -1.77 16 16 N -0.93 -59.94 13.65 21.45 0.29 -59.65 16 17 Si 1.12 51.10 29.90 68.60 2.05 53.16 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 20 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 21 C 0.51 16.69 7.65 87.94 0.67 17.37 16 22 O -0.50 -18.99 17.76 -2.87 -0.05 -19.04 16 23 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 24 H 0.07 0.74 7.85 -2.39 -0.02 0.72 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.13 0.96 8.06 -2.91 -0.02 0.94 16 27 H 0.13 1.04 8.06 -2.91 -0.02 1.02 16 28 H 0.10 1.55 5.79 -2.39 -0.01 1.54 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.45 6.83 8.96 -92.71 -0.83 6.00 16 31 H 0.09 3.91 8.00 -2.39 -0.02 3.89 16 32 H 0.09 3.82 7.85 -2.39 -0.02 3.80 16 33 H -0.01 -0.85 8.01 -2.39 -0.02 -0.87 16 34 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 35 H 0.25 16.56 7.22 -92.70 -0.67 15.89 16 Total: -1.00 -77.77 304.74 2.74 -75.03 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.37 Total: 7.96 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 4.98 Total: 9.92 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -4.54 Total: -101.73 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.12 Total: -44.32 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.16 kcal Total: -77.77 2.74 -75.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358736396.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.252 kcal (2) G-P(sol) polarization free energy of solvation -77.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds