Wall clock time and date at job start Mon Mar 30 2020 03:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 115.49267 * 2 1 4 4 C 1.53000 * 117.43998 * 145.37611 * 2 1 3 5 5 H 1.08998 * 119.54281 * 354.28692 * 4 2 1 6 6 C 1.54393 * 118.12119 * 199.19101 * 4 2 1 7 7 N 1.48143 * 104.61731 * 270.79399 * 6 4 2 8 8 C 1.34774 * 127.84171 * 219.58760 * 7 6 4 9 9 O 1.21435 * 120.00293 * 180.02562 * 8 7 6 10 10 C 1.48839 * 119.99655 * 359.97438 * 8 7 6 11 11 O 1.21502 * 119.99831 * 0.02562 * 10 8 7 12 12 N 1.34774 * 119.99655 * 180.02562 * 10 8 7 13 13 C 1.36125 * 119.99542 * 180.02562 * 12 10 8 14 14 H 1.07996 * 119.99922 * 0.02562 * 13 12 10 15 15 C 1.39585 * 119.99886 * 179.97438 * 13 12 10 16 16 N 1.31015 * 119.99955 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46790 * 90.00386 * 17 15 13 19 19 H 1.48496 * 109.47290 * 210.00228 * 17 15 13 20 20 H 1.48495 * 109.47220 * 330.00847 * 17 15 13 21 21 C 1.48146 * 104.32545 * 39.58369 * 7 6 4 22 22 C 1.54291 * 61.49844 * 106.73355 * 4 2 1 23 23 H 1.08990 * 121.81629 * 251.13229 * 22 4 2 24 24 H 1.08998 * 109.47047 * 274.62246 * 1 2 3 25 25 H 1.09005 * 109.46865 * 34.61912 * 1 2 3 26 26 H 1.08996 * 109.46870 * 154.62268 * 1 2 3 27 27 H 1.09000 * 109.46868 * 205.37757 * 3 2 1 28 28 H 1.09000 * 109.47440 * 325.37676 * 3 2 1 29 29 H 1.08998 * 109.47880 * 85.37960 * 3 2 1 30 30 H 1.09001 * 110.40671 * 152.00721 * 6 4 2 31 31 H 1.09000 * 110.40826 * 29.57522 * 6 4 2 32 32 H 0.96996 * 120.00731 * 0.02562 * 12 10 8 33 33 H 0.97003 * 120.00267 * 179.97438 * 16 15 13 34 34 H 1.09008 * 110.40723 * 79.20042 * 21 7 6 35 35 H 1.09000 * 110.41329 * 201.62651 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1885 1.3810 0.0000 4 6 2.2351 -1.1174 0.7715 5 1 1.6453 -1.8141 1.3673 6 6 3.7118 -0.9069 1.1701 7 7 4.4873 -1.4285 0.0207 8 6 5.6293 -2.1436 0.0500 9 8 6.1489 -2.5008 -0.9877 10 6 6.2541 -2.4945 1.3545 11 8 5.7344 -2.1367 2.3929 12 7 7.3964 -3.2091 1.3839 13 6 7.9676 -3.5305 2.5770 14 1 7.5053 -3.2132 3.4999 15 6 9.1504 -4.2711 2.6075 16 7 9.7111 -4.6565 1.4878 17 14 9.9347 -4.7115 4.2446 18 1 9.3991 -6.0141 4.7155 19 1 11.4066 -4.8131 4.0770 20 1 9.6216 -3.6577 5.2429 21 6 3.7226 -0.9858 -1.1685 22 6 2.2423 -1.1694 -0.7705 23 1 1.6579 -1.9048 -1.3233 24 1 -0.3633 0.0828 1.0243 25 1 -0.3633 0.8458 -0.5839 26 1 -0.3633 -0.9285 -0.4404 27 1 3.1830 1.3093 -0.4404 28 1 1.5816 2.0730 -0.5839 29 1 2.2702 1.7447 1.0243 30 1 3.9456 -1.4702 2.0735 31 1 3.9181 0.1531 1.3181 32 1 7.8116 -3.4945 0.5550 33 1 10.5332 -5.1709 1.5089 34 1 3.9307 0.0619 -1.3858 35 1 3.9647 -1.6087 -2.0296 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380360901.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:35 Heat of formation + Delta-G solvation = -52.008698 kcal Electronic energy + Delta-G solvation = -18568.245641 eV Core-core repulsion = 15566.709882 eV Total energy + Delta-G solvation = -3001.535760 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.81170 -40.37206 -38.87973 -36.48639 -35.34250 -33.47889 -30.66762 -29.61396 -28.63034 -27.91013 -26.16451 -23.68561 -21.26528 -20.88466 -20.15421 -19.48667 -18.25163 -17.86127 -17.01960 -16.85667 -16.14072 -15.82837 -15.51610 -15.47498 -14.95243 -14.48218 -14.29755 -13.72767 -13.58083 -13.31137 -13.20621 -12.98423 -12.88521 -12.77653 -12.57323 -12.33877 -12.19474 -12.10715 -12.05092 -11.67753 -10.84105 -10.43130 -10.30037 -10.10232 -9.82819 -8.67551 -6.12679 0.54446 1.39039 1.46102 1.52749 1.64521 2.26068 2.31948 2.39305 3.05030 3.12408 3.45548 3.59544 3.74123 3.93909 4.06971 4.15453 4.19709 4.45034 4.58228 4.69857 4.84366 4.89759 4.96902 5.05655 5.07861 5.11268 5.15762 5.21741 5.26317 5.34482 5.51577 5.66345 6.20462 6.30192 6.70834 6.92888 7.25024 7.77409 8.48463 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.046790 B = 0.004673 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.274262 B = 5990.977303 C = 6345.876989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.174 4.174 5 H 0.123 0.877 6 C 0.114 3.886 7 N -0.599 5.599 8 C 0.532 3.468 9 O -0.573 6.573 10 C 0.393 3.607 11 O -0.604 6.604 12 N -0.510 5.510 13 C -0.345 4.345 14 H 0.101 0.899 15 C -0.005 4.005 16 N -0.897 5.897 17 Si 1.012 2.988 18 H -0.264 1.264 19 H -0.267 1.267 20 H -0.263 1.263 21 C 0.120 3.880 22 C -0.175 4.175 23 H 0.134 0.866 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.399 0.601 33 H 0.289 0.711 34 H 0.093 0.907 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.340 8.827 -2.743 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.193 4.193 5 H 0.141 0.859 6 C -0.008 4.008 7 N -0.332 5.332 8 C 0.318 3.682 9 O -0.453 6.453 10 C 0.178 3.822 11 O -0.494 6.494 12 N -0.144 5.144 13 C -0.474 4.474 14 H 0.119 0.881 15 C -0.209 4.209 16 N -0.534 5.534 17 Si 0.832 3.168 18 H -0.189 1.189 19 H -0.191 1.191 20 H -0.187 1.187 21 C 0.000 4.000 22 C -0.194 4.194 23 H 0.152 0.848 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.234 0.766 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.107 8.697 -2.694 17.639 hybrid contribution 0.984 -0.750 0.055 1.239 sum -14.123 7.948 -2.639 16.419 Atomic orbital electron populations 1.21364 0.89306 1.03180 1.03015 1.22438 0.95643 0.90051 0.98191 1.21508 1.00462 0.93764 1.02835 1.23865 0.95729 1.04846 0.94840 0.85927 1.22298 0.88534 0.99893 0.90044 1.49041 1.22294 1.51233 1.10610 1.19870 0.80792 0.78192 0.89361 1.90667 1.63439 1.55564 1.35601 1.19421 0.85353 0.88206 0.89207 1.90447 1.64267 1.60194 1.34458 1.41657 1.19629 1.42948 1.10170 1.20004 1.07134 1.33843 0.86433 0.88138 1.26576 0.96101 0.94818 1.03413 1.69558 1.20043 1.34616 1.29228 0.84668 0.77301 0.79118 0.75664 1.18921 1.19102 1.18661 1.22045 0.89250 1.00728 0.87996 1.24599 0.95315 1.04513 0.94971 0.84808 0.91081 0.90141 0.91851 0.92964 0.89790 0.91317 0.88866 0.90089 0.76613 0.90061 0.88931 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.85 71.98 0.71 -0.68 16 2 C -0.06 -1.11 2.77 -50.73 -0.14 -1.25 16 3 C -0.13 -2.10 8.49 71.98 0.61 -1.49 16 4 C -0.17 -4.23 6.68 -9.88 -0.07 -4.29 16 5 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 6 C 0.11 3.72 6.11 86.54 0.53 4.25 16 7 N -0.60 -22.60 3.32 -810.21 -2.69 -25.28 16 8 C 0.53 25.20 7.96 87.08 0.69 25.89 16 9 O -0.57 -29.11 16.73 -3.51 -0.06 -29.17 16 10 C 0.39 20.95 7.80 87.08 0.68 21.63 16 11 O -0.60 -33.11 13.32 -3.72 -0.05 -33.16 16 12 N -0.51 -28.82 5.25 -308.87 -1.62 -30.44 16 13 C -0.34 -19.63 9.67 84.35 0.82 -18.81 16 14 H 0.10 5.84 7.15 -2.91 -0.02 5.82 16 15 C 0.00 -0.26 5.51 85.14 0.47 0.21 16 16 N -0.90 -48.88 13.03 21.76 0.28 -48.60 16 17 Si 1.01 41.00 29.56 68.60 2.03 43.03 16 18 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 19 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 C 0.12 3.45 6.55 86.53 0.57 4.02 16 22 C -0.18 -3.91 6.90 -8.44 -0.06 -3.97 16 23 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.08 0.76 7.93 -2.38 -0.02 0.74 16 26 H 0.06 0.76 7.96 -2.39 -0.02 0.74 16 27 H 0.05 0.99 5.35 -2.39 -0.01 0.98 16 28 H 0.08 1.01 7.93 -2.39 -0.02 0.99 16 29 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 30 H 0.09 3.69 5.48 -2.39 -0.01 3.68 16 31 H 0.08 2.43 6.76 -2.39 -0.02 2.41 16 32 H 0.40 22.93 7.35 -92.71 -0.68 22.25 16 33 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 34 H 0.09 2.33 6.08 -2.38 -0.01 2.31 16 35 H 0.08 2.36 7.88 -2.39 -0.02 2.34 16 Total: -1.00 -66.86 291.48 3.14 -63.71 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.44 Total: 34.39 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: 4.81 Total: 25.51 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -4.02 Total: -104.32 kcal Atomic # 8 Polarization: -62.22 SS G_CDS: -0.11 Total: -62.33 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -66.86 3.14 -63.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380360901.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.705 kcal (2) G-P(sol) polarization free energy of solvation -66.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds