Wall clock time and date at job start Mon Mar 30 2020 03:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39804 * 120.08809 * 2 1 4 4 C 1.36021 * 119.08121 * 180.24547 * 3 2 1 5 5 C 1.50706 * 120.40453 * 179.74089 * 4 3 2 6 6 N 1.35868 * 119.19317 * 359.46558 * 4 3 2 7 7 C 1.46493 * 119.93841 * 180.25492 * 6 4 3 8 8 C 1.52998 * 109.47610 * 89.99853 * 7 6 4 9 9 O 1.42902 * 109.47070 * 64.99893 * 8 7 6 10 10 C 1.42898 * 114.00412 * 180.02562 * 9 8 7 11 11 C 1.50689 * 109.47291 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00338 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00090 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00319 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99878 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47072 * 90.00267 * 15 13 11 17 17 H 1.48500 * 109.47287 * 210.00256 * 15 13 11 18 18 H 1.48504 * 109.47108 * 330.00208 * 15 13 11 19 19 C 1.34620 * 120.12563 * 0.27285 * 6 4 3 20 20 O 1.21948 * 119.52556 * 179.97438 * 19 6 4 21 21 N 1.31763 * 120.07857 * 179.70321 * 2 1 3 22 22 H 1.08996 * 109.47654 * 180.28778 * 1 2 3 23 23 H 1.08994 * 109.47369 * 300.29411 * 1 2 3 24 24 H 1.09009 * 109.46826 * 60.28866 * 1 2 3 25 25 H 1.07998 * 120.46046 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.46953 * 269.72142 * 5 4 3 27 27 H 1.09000 * 109.47318 * 29.71739 * 5 4 3 28 28 H 1.09000 * 109.47161 * 149.72370 * 5 4 3 29 29 H 1.09001 * 109.47268 * 210.00114 * 7 6 4 30 30 H 1.09005 * 109.47362 * 329.99324 * 7 6 4 31 31 H 1.08995 * 109.47290 * 184.99663 * 8 7 6 32 32 H 1.08995 * 109.47049 * 304.99854 * 8 7 6 33 33 H 1.09004 * 109.46725 * 300.00389 * 10 9 8 34 34 H 1.08997 * 109.47151 * 59.99347 * 10 9 8 35 35 H 0.97002 * 119.99720 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2079 1.2097 0.0000 4 6 3.5679 1.1858 -0.0051 5 6 4.3533 2.4720 -0.0111 6 7 4.2097 -0.0118 0.0010 7 6 5.6739 -0.0565 0.0013 8 6 6.1837 -0.0647 1.4438 9 8 5.7685 -1.2704 2.0889 10 6 6.1946 -1.3787 3.4486 11 6 5.7044 -2.6812 4.0264 12 1 5.1250 -3.3585 3.4165 13 6 5.9947 -3.0078 5.3341 14 7 5.5665 -4.1444 5.8386 15 14 6.9962 -1.8360 6.3893 16 1 6.0833 -0.8958 7.0878 17 1 7.7702 -2.6112 7.3919 18 1 7.9312 -1.0695 5.5270 19 6 3.5025 -1.1573 0.0064 20 8 4.0898 -2.2260 0.0114 21 7 2.1674 -1.1402 0.0059 22 1 -0.3634 -1.0276 0.0052 23 1 -0.3634 0.5184 0.8873 24 1 -0.3633 0.5094 -0.8927 25 1 1.6769 2.1501 0.0004 26 1 4.5430 2.7770 -1.0402 27 1 3.7829 3.2484 0.4986 28 1 5.3020 2.3207 0.5038 29 1 6.0099 -0.9598 -0.5079 30 1 6.0643 0.8193 -0.5171 31 1 7.2722 -0.0085 1.4448 32 1 5.7751 0.7927 1.9785 33 1 7.2834 -1.3493 3.4915 34 1 5.7859 -0.5485 4.0246 35 1 5.7704 -4.3740 6.7588 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385253546.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:35 Heat of formation + Delta-G solvation = -68.037850 kcal Electronic energy + Delta-G solvation = -18761.251710 eV Core-core repulsion = 15759.020875 eV Total energy + Delta-G solvation = -3002.230836 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.76901 -38.93916 -38.37686 -37.17167 -34.94963 -33.25023 -32.08559 -30.59652 -29.69127 -28.09278 -24.61601 -24.01791 -23.87480 -22.39807 -19.44339 -19.20473 -18.41218 -17.45558 -17.34506 -17.05884 -16.50210 -16.29891 -15.06587 -15.03138 -14.78910 -14.59359 -14.42621 -14.20736 -14.14079 -13.82229 -13.29608 -13.20085 -12.96025 -12.89174 -12.81327 -12.56149 -12.06471 -11.87536 -11.81494 -11.49274 -11.34852 -11.00108 -10.57969 -10.41735 -9.38491 -8.43005 -6.53533 -0.24775 0.76023 1.25783 1.32702 1.43662 1.48521 2.24386 2.75938 2.88038 2.97858 3.28354 3.34815 3.74004 3.90190 3.95522 4.10947 4.32460 4.36707 4.43762 4.47112 4.52473 4.71611 4.72108 4.82381 4.83189 4.89856 4.93970 5.07470 5.25604 5.35173 5.54084 5.61593 5.86913 6.51919 6.69435 6.89920 7.11049 7.27770 8.75982 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.006020 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.679142 B = 4650.374072 C = 5058.859225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.253 3.747 3 C -0.296 4.296 4 C 0.206 3.794 5 C -0.128 4.128 6 N -0.511 5.511 7 C 0.093 3.907 8 C 0.027 3.973 9 O -0.405 6.405 10 C 0.184 3.816 11 C -0.554 4.554 12 H 0.007 0.993 13 C 0.006 3.994 14 N -0.946 5.946 15 Si 0.971 3.029 16 H -0.256 1.256 17 H -0.270 1.270 18 H -0.238 1.238 19 C 0.617 3.383 20 O -0.584 6.584 21 N -0.618 5.618 22 H 0.062 0.938 23 H 0.114 0.886 24 H 0.125 0.875 25 H 0.206 0.794 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.169 0.831 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.011 0.989 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.925 25.672 -13.101 29.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.095 3.905 3 C -0.321 4.321 4 C 0.088 3.912 5 C -0.184 4.184 6 N -0.225 5.225 7 C -0.028 4.028 8 C -0.050 4.050 9 O -0.325 6.325 10 C 0.108 3.892 11 C -0.591 4.591 12 H 0.025 0.975 13 C -0.191 4.191 14 N -0.586 5.586 15 Si 0.790 3.210 16 H -0.180 1.180 17 H -0.194 1.194 18 H -0.162 1.162 19 C 0.319 3.681 20 O -0.462 6.462 21 N -0.356 5.356 22 H 0.081 0.919 23 H 0.133 0.867 24 H 0.143 0.857 25 H 0.223 0.777 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.187 0.813 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.037 0.963 34 H 0.029 0.971 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.770 23.743 -13.045 27.352 hybrid contribution 0.654 -0.231 0.726 1.004 sum -3.115 23.512 -12.318 26.726 Atomic orbital electron populations 1.21092 0.85051 1.04581 1.06175 1.23029 0.99712 0.88212 0.79522 1.21712 0.92045 1.01122 1.17180 1.22219 0.94536 0.88129 0.86345 1.21469 1.00535 0.89550 1.06885 1.46402 1.10391 1.07229 1.58519 1.22341 0.76543 1.06826 0.97118 1.23175 1.00543 0.88309 0.93008 1.88139 1.77695 1.40058 1.26589 1.20278 0.94194 0.94886 0.79831 1.21178 1.35593 1.04397 0.97966 0.97452 1.26088 0.96731 0.97732 0.98547 1.70088 1.47178 1.25118 1.16166 0.85409 0.79051 0.78404 0.78117 1.17989 1.19445 1.16158 1.18358 0.85859 0.84089 0.79753 1.90980 1.69947 1.30199 1.55029 1.69730 1.05800 1.31467 1.28629 0.91909 0.86743 0.85686 0.77681 0.85518 0.85531 0.89277 0.90346 0.81343 0.89517 0.91612 0.96276 0.97093 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 10.19 71.24 0.73 -1.12 16 2 C 0.25 6.73 6.84 42.95 0.29 7.02 16 3 C -0.30 -5.22 9.44 22.13 0.21 -5.01 16 4 C 0.21 3.98 6.68 41.42 0.28 4.25 16 5 C -0.13 -0.76 9.14 71.24 0.65 -0.11 16 6 N -0.51 -16.19 2.57 -642.67 -1.65 -17.84 16 7 C 0.09 2.55 5.16 86.38 0.45 2.99 16 8 C 0.03 0.87 6.07 71.98 0.44 1.31 16 9 O -0.41 -21.10 9.08 -140.81 -1.28 -22.38 16 10 C 0.18 9.94 4.76 71.23 0.34 10.28 16 11 C -0.55 -37.56 9.99 25.60 0.26 -37.30 16 12 H 0.01 0.57 8.06 -2.91 -0.02 0.54 16 13 C 0.01 0.40 5.47 84.65 0.46 0.86 16 14 N -0.95 -64.08 13.96 21.45 0.30 -63.78 16 15 Si 0.97 45.14 27.47 68.60 1.88 47.02 16 16 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 19 C 0.62 28.23 7.98 179.49 1.43 29.66 16 20 O -0.58 -34.12 15.92 3.02 0.05 -34.08 16 21 N -0.62 -25.71 10.39 -313.21 -3.26 -28.97 16 22 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 23 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 26 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 27 H 0.13 0.12 8.09 -2.39 -0.02 0.10 16 28 H 0.09 0.54 5.86 -2.39 -0.01 0.52 16 29 H 0.08 2.67 7.39 -2.39 -0.02 2.66 16 30 H 0.17 2.15 6.58 -2.38 -0.02 2.13 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.07 1.79 7.48 -2.39 -0.02 1.78 16 33 H 0.02 0.98 7.20 -2.38 -0.02 0.96 16 34 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 35 H 0.27 16.81 8.31 -92.71 -0.77 16.04 16 Total: -1.00 -108.09 297.12 2.60 -105.49 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: 1.03 Total: 1.70 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 5.53 Total: 12.84 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -4.61 Total: -110.59 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -1.23 Total: -56.46 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -108.09 2.60 -105.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385253546.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.449 kcal (2) G-P(sol) polarization free energy of solvation -108.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds