Wall clock time and date at job start Mon Mar 30 2020 03:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35344 * 127.25005 * 2 1 4 4 N 1.35056 * 107.23992 * 179.97438 * 3 2 1 5 5 C 1.46496 * 124.87579 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46953 * 125.00153 * 5 4 3 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00290 * 0.02562 * 9 8 7 11 11 C 1.37887 * 120.00079 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99907 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99654 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47022 * 89.99986 * 13 11 9 15 15 H 1.48502 * 109.46769 * 209.99494 * 13 11 9 16 16 H 1.48495 * 109.47280 * 329.99669 * 13 11 9 17 17 N 1.28468 * 110.23900 * 0.24055 * 4 3 2 18 18 C 1.31852 * 110.06370 * 359.59918 * 17 4 3 19 19 C 1.47588 * 126.52111 * 180.15957 * 18 17 4 20 20 O 1.21493 * 119.99965 * 180.27176 * 19 18 17 21 21 O 1.34724 * 120.00177 * 0.27238 * 19 18 17 22 22 H 1.08997 * 109.47272 * 89.99748 * 1 2 3 23 23 H 1.09009 * 109.47259 * 210.00454 * 1 2 3 24 24 H 1.09005 * 109.47267 * 329.99822 * 1 2 3 25 25 H 1.07992 * 126.37865 * 359.97438 * 3 2 1 26 26 H 1.08996 * 109.47565 * 5.00193 * 5 4 3 27 27 H 1.09001 * 109.47062 * 244.99658 * 5 4 3 28 28 H 1.09001 * 109.47502 * 60.00124 * 6 5 4 29 29 H 1.09001 * 109.47289 * 299.99920 * 6 5 4 30 30 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 31 31 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 32 32 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 33 33 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 34 34 H 0.96999 * 119.99682 * 180.02562 * 12 11 9 35 35 H 0.96701 * 117.00094 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3262 1.0773 0.0000 4 7 3.5952 0.6152 0.0006 5 6 4.7936 1.4578 0.0002 6 6 5.6864 1.0752 1.1823 7 6 6.9383 1.9548 1.1816 8 6 7.8315 1.5717 2.3633 9 6 9.0648 2.4376 2.3622 10 1 9.1981 3.1867 1.5957 11 6 10.0226 2.2744 3.3405 12 7 11.0987 3.0305 3.3399 13 14 9.7917 0.9794 4.6668 14 1 10.3899 -0.3029 4.2160 15 1 10.4601 1.4253 5.9157 16 1 8.3419 0.7863 4.9230 17 7 3.6004 -0.6695 -0.0041 18 6 2.3637 -1.1268 0.0006 19 6 1.9513 -2.5439 0.0009 20 8 0.7713 -2.8331 0.0006 21 8 2.8833 -3.5167 0.0015 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 2.0218 2.1135 -0.0004 26 1 4.5020 2.5043 0.0891 27 1 5.3408 1.3109 -0.9309 28 1 5.9781 0.0287 1.0935 29 1 5.1392 1.2221 2.1135 30 1 7.4854 1.8074 0.2504 31 1 6.6470 3.0013 1.2702 32 1 7.2847 1.7187 3.2947 33 1 8.1227 0.5250 2.2743 34 1 11.7727 2.9154 4.0279 35 1 2.5648 -4.4298 0.0021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385882801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:25 Heat of formation + Delta-G solvation = -34.357331 kcal Electronic energy + Delta-G solvation = -17636.615856 eV Core-core repulsion = 14635.845517 eV Total energy + Delta-G solvation = -3000.770339 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.87716 -39.96648 -36.29022 -35.90736 -33.70118 -32.46238 -31.73262 -29.46104 -27.30435 -26.20226 -23.77370 -21.89563 -21.09554 -20.32157 -20.12638 -18.08074 -17.47734 -16.79409 -16.42003 -16.09902 -15.47458 -14.89041 -14.25462 -13.92828 -13.57898 -13.36123 -13.29103 -12.81117 -12.73627 -12.41492 -12.28319 -11.95259 -11.70309 -11.36746 -11.04481 -10.97219 -10.79607 -10.64864 -10.01449 -9.84412 -9.74517 -9.39911 -9.23774 -8.90630 -8.57389 -6.08242 -4.06758 1.21793 1.89731 2.24539 2.97352 3.02606 3.29129 3.36645 3.40299 4.20932 4.42390 4.57185 4.86595 4.92042 5.05395 5.20678 5.23609 5.26133 5.33497 5.57870 5.68281 5.74120 5.81096 5.93433 6.11100 6.20728 6.33404 6.42485 6.54565 6.62185 6.81628 7.22503 7.35409 7.61721 7.74787 7.90618 8.48677 8.95969 9.54389 11.05122 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.031197 B = 0.003827 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.302161 B = 7314.931764 C = 7865.735858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.146 4.146 3 C -0.021 4.021 4 N -0.264 5.264 5 C 0.115 3.885 6 C -0.135 4.135 7 C -0.099 4.099 8 C -0.014 4.014 9 C -0.523 4.523 10 H 0.072 0.928 11 C 0.066 3.934 12 N -0.903 5.903 13 Si 0.880 3.120 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.266 1.266 17 N -0.222 5.222 18 C -0.024 4.024 19 C 0.578 3.422 20 O -0.512 6.512 21 O -0.501 6.501 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.185 0.815 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.263 0.737 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.106 -6.397 -7.689 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C -0.163 4.163 4 N -0.054 5.054 5 C -0.004 4.004 6 C -0.173 4.173 7 C -0.137 4.137 8 C -0.051 4.051 9 C -0.561 4.561 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.542 5.542 13 Si 0.707 3.293 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.191 1.191 17 N -0.060 5.060 18 C -0.180 4.180 19 C 0.420 3.580 20 O -0.399 6.399 21 O -0.311 6.311 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.202 0.798 26 H 0.125 0.875 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -18.907 -6.310 -7.600 21.332 hybrid contribution -0.825 -0.873 0.758 1.420 sum -19.732 -7.182 -6.842 22.085 Atomic orbital electron populations 1.20184 0.88003 1.03105 1.02352 1.20288 0.97314 0.90026 1.07928 1.22731 0.83645 1.00706 1.09242 1.45874 1.07528 1.03652 1.48296 1.22434 0.82458 0.92812 1.02673 1.22051 0.96910 1.02516 0.95798 1.21419 0.93395 0.97916 1.01012 1.19559 0.95283 0.96767 0.93496 1.21134 1.02508 1.19426 1.13012 0.91014 1.25038 0.94960 0.95829 0.97665 1.69913 1.09698 1.39713 1.34906 0.86774 0.78792 0.82166 0.81535 1.20217 1.21359 1.19067 1.73689 1.22413 0.94005 1.15936 1.20537 0.90344 0.91479 1.15600 1.19274 0.82767 0.84349 0.71579 1.90874 1.18485 1.83401 1.47108 1.84683 1.41404 1.19670 1.85347 0.91417 0.90251 0.91648 0.79823 0.87520 0.88431 0.90471 0.91616 0.92253 0.92398 0.96631 0.96900 0.92697 0.72896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.93 36.00 0.36 -0.39 16 2 C -0.15 -1.72 6.25 -104.39 -0.65 -2.38 16 3 C -0.02 -0.22 11.35 -17.16 -0.19 -0.42 16 4 N -0.26 -3.30 3.40 -61.34 -0.21 -3.51 16 5 C 0.12 1.28 6.40 -4.05 -0.03 1.25 16 6 C -0.13 -1.96 5.32 -26.73 -0.14 -2.10 16 7 C -0.10 -1.76 5.15 -26.73 -0.14 -1.90 16 8 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 9 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 10 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 11 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 12 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 13 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 17 N -0.22 -3.28 11.69 33.41 0.39 -2.89 16 18 C -0.02 -0.33 7.17 -82.78 -0.59 -0.92 16 19 C 0.58 7.58 8.34 34.55 0.29 7.87 16 20 O -0.51 -7.17 15.90 -19.26 -0.31 -7.48 16 21 O -0.50 -5.46 13.44 -40.56 -0.55 -6.01 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 0.85 6.72 -51.92 -0.35 0.50 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 26 H 0.11 0.89 8.04 -51.93 -0.42 0.47 16 27 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.23 8.09 -51.93 -0.42 0.81 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 33 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.41 2.21 9.11 45.56 0.42 2.62 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -34.40 305.62 -5.69 -40.08 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -4.08 Total: -2.36 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.64 Total: -12.56 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.96 Total: -33.33 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.85 Total: -13.49 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.40 -5.69 -40.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385882801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.726 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds