Wall clock time and date at job start Mon Mar 30 2020 03:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35344 * 127.25005 * 2 1 4 4 N 1.35056 * 107.23992 * 179.97438 * 3 2 1 5 5 C 1.46496 * 124.87579 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46953 * 125.00153 * 5 4 3 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00290 * 0.02562 * 9 8 7 11 11 C 1.37887 * 120.00079 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99907 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99654 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47022 * 89.99986 * 13 11 9 15 15 H 1.48502 * 109.46769 * 209.99494 * 13 11 9 16 16 H 1.48495 * 109.47280 * 329.99669 * 13 11 9 17 17 N 1.28468 * 110.23900 * 0.24055 * 4 3 2 18 18 C 1.31852 * 110.06370 * 359.59918 * 17 4 3 19 19 C 1.47588 * 126.52111 * 180.15957 * 18 17 4 20 20 O 1.21493 * 119.99965 * 180.27176 * 19 18 17 21 21 O 1.34724 * 120.00177 * 0.27238 * 19 18 17 22 22 H 1.08997 * 109.47272 * 89.99748 * 1 2 3 23 23 H 1.09009 * 109.47259 * 210.00454 * 1 2 3 24 24 H 1.09005 * 109.47267 * 329.99822 * 1 2 3 25 25 H 1.07992 * 126.37865 * 359.97438 * 3 2 1 26 26 H 1.08996 * 109.47565 * 5.00193 * 5 4 3 27 27 H 1.09001 * 109.47062 * 244.99658 * 5 4 3 28 28 H 1.09001 * 109.47502 * 60.00124 * 6 5 4 29 29 H 1.09001 * 109.47289 * 299.99920 * 6 5 4 30 30 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 31 31 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 32 32 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 33 33 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 34 34 H 0.96999 * 119.99682 * 180.02562 * 12 11 9 35 35 H 0.96701 * 117.00094 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3262 1.0773 0.0000 4 7 3.5952 0.6152 0.0006 5 6 4.7936 1.4578 0.0002 6 6 5.6864 1.0752 1.1823 7 6 6.9383 1.9548 1.1816 8 6 7.8315 1.5717 2.3633 9 6 9.0648 2.4376 2.3622 10 1 9.1981 3.1867 1.5957 11 6 10.0226 2.2744 3.3405 12 7 11.0987 3.0305 3.3399 13 14 9.7917 0.9794 4.6668 14 1 10.3899 -0.3029 4.2160 15 1 10.4601 1.4253 5.9157 16 1 8.3419 0.7863 4.9230 17 7 3.6004 -0.6695 -0.0041 18 6 2.3637 -1.1268 0.0006 19 6 1.9513 -2.5439 0.0009 20 8 0.7713 -2.8331 0.0006 21 8 2.8833 -3.5167 0.0015 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 2.0218 2.1135 -0.0004 26 1 4.5020 2.5043 0.0891 27 1 5.3408 1.3109 -0.9309 28 1 5.9781 0.0287 1.0935 29 1 5.1392 1.2221 2.1135 30 1 7.4854 1.8074 0.2504 31 1 6.6470 3.0013 1.2702 32 1 7.2847 1.7187 3.2947 33 1 8.1227 0.5250 2.2743 34 1 11.7727 2.9154 4.0279 35 1 2.5648 -4.4298 0.0021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385882801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:25 Heat of formation + Delta-G solvation = -57.872228 kcal Electronic energy + Delta-G solvation = -17637.635538 eV Core-core repulsion = 14635.845517 eV Total energy + Delta-G solvation = -3001.790021 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.76293 -40.90918 -37.30099 -37.08217 -35.22284 -33.91576 -32.89309 -30.87192 -28.20214 -27.52072 -25.11762 -23.13433 -21.98125 -21.84058 -21.11802 -18.97868 -18.87956 -18.37998 -17.42292 -17.06300 -16.53538 -16.28283 -16.00287 -14.83331 -14.70264 -14.54436 -14.24774 -14.23136 -13.87709 -13.71902 -13.46928 -13.10834 -12.93543 -12.62698 -12.52415 -12.25291 -11.95644 -11.79487 -11.65227 -11.51213 -11.39219 -11.29789 -10.76988 -10.34662 -9.77021 -8.30336 -6.33633 0.24652 1.09006 1.34875 1.35867 1.39481 1.47519 2.06644 2.16324 2.34796 3.05526 3.35210 3.82587 3.89194 3.97307 4.25914 4.34029 4.39569 4.49185 4.53364 4.59937 4.73234 4.90804 4.97638 5.06397 5.11445 5.16041 5.18001 5.41313 5.51424 5.54965 5.61141 5.67027 5.85615 6.28120 6.75116 6.76088 7.04011 7.31436 8.86267 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.031197 B = 0.003827 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.302161 B = 7314.931764 C = 7865.735858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.161 4.161 3 C -0.006 4.006 4 N -0.269 5.269 5 C 0.119 3.881 6 C -0.122 4.122 7 C -0.090 4.090 8 C -0.016 4.016 9 C -0.531 4.531 10 H 0.038 0.962 11 C 0.004 3.996 12 N -0.951 5.951 13 Si 0.947 3.053 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.250 1.250 17 N -0.260 5.260 18 C -0.047 4.047 19 C 0.577 3.423 20 O -0.528 6.528 21 O -0.504 6.504 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.227 0.773 26 H 0.144 0.856 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.017 0.983 33 H 0.011 0.989 34 H 0.266 0.734 35 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.978 -6.383 -7.582 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.171 4.171 3 C -0.148 4.148 4 N -0.058 5.058 5 C 0.000 4.000 6 C -0.160 4.160 7 C -0.129 4.129 8 C -0.053 4.053 9 C -0.569 4.569 10 H 0.057 0.943 11 C -0.193 4.193 12 N -0.592 5.592 13 Si 0.771 3.229 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.173 1.173 17 N -0.099 5.099 18 C -0.203 4.203 19 C 0.420 3.580 20 O -0.417 6.417 21 O -0.317 6.317 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.108 0.892 25 H 0.244 0.756 26 H 0.162 0.838 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.035 0.965 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -20.790 -6.328 -7.506 22.991 hybrid contribution -0.211 -0.841 0.666 1.093 sum -21.000 -7.169 -6.840 23.221 Atomic orbital electron populations 1.20195 0.86620 1.03461 1.02906 1.20692 0.98442 0.89793 1.08143 1.23389 0.82356 1.02236 1.06822 1.45979 1.08505 1.03148 1.48145 1.22456 0.81996 0.94314 1.01207 1.21788 0.96019 1.00657 0.97559 1.21239 0.93962 0.99106 0.98557 1.19555 0.94211 0.95575 0.95993 1.21547 1.04419 1.19117 1.11805 0.94348 1.25992 0.94658 0.98216 1.00425 1.70060 1.10941 1.41927 1.36259 0.85705 0.79627 0.79228 0.78366 1.19461 1.20921 1.17333 1.73635 1.23109 0.95399 1.17723 1.20922 0.90890 0.92376 1.16100 1.19332 0.82692 0.84700 0.71240 1.90857 1.19020 1.83733 1.48067 1.84645 1.41207 1.21026 1.84838 0.90722 0.91975 0.89158 0.75623 0.83840 0.87622 0.92208 0.91773 0.92302 0.91429 0.96452 0.97020 0.92535 0.70447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 9.93 71.24 0.71 -0.54 16 2 C -0.16 -3.47 6.25 -19.72 -0.12 -3.59 16 3 C -0.01 -0.11 11.35 83.53 0.95 0.84 16 4 N -0.27 -6.01 3.40 -347.97 -1.18 -7.19 16 5 C 0.12 2.26 6.40 86.38 0.55 2.81 16 6 C -0.12 -3.29 5.32 30.60 0.16 -3.12 16 7 C -0.09 -3.06 5.15 30.60 0.16 -2.90 16 8 C -0.02 -0.72 4.04 29.85 0.12 -0.60 16 9 C -0.53 -30.02 9.66 25.60 0.25 -29.77 16 10 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 11 C 0.00 0.22 5.47 84.66 0.46 0.69 16 12 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 13 Si 0.95 44.50 27.47 68.60 1.88 46.39 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 17 N -0.26 -7.38 11.69 -48.21 -0.56 -7.94 16 18 C -0.05 -1.28 7.17 42.43 0.30 -0.98 16 19 C 0.58 14.96 8.34 70.29 0.59 15.54 16 20 O -0.53 -14.68 15.90 19.86 0.32 -14.36 16 21 O -0.50 -10.75 13.44 -56.34 -0.76 -11.51 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.26 6.72 -2.38 -0.02 1.25 16 24 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.23 1.77 8.06 -2.91 -0.02 1.75 16 26 H 0.14 1.70 8.04 -2.39 -0.02 1.68 16 27 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 1.83 8.09 -2.39 -0.02 1.81 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 33 H 0.01 0.52 7.57 -2.38 -0.02 0.50 16 34 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.43 4.31 9.11 -74.06 -0.67 3.64 16 Total: -1.00 -75.81 305.62 4.49 -71.33 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 0.37 Total: 4.01 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 4.13 Total: -21.62 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.45 Total: -74.24 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.44 Total: -25.87 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Total: -75.81 4.49 -71.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385882801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.453 kcal (2) G-P(sol) polarization free energy of solvation -75.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds