Wall clock time and date at job start Mon Mar 30 2020 03:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00287 * 2 1 4 4 H 1.48496 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46997 * 300.00267 * 3 2 1 6 6 H 1.48507 * 109.46839 * 59.99900 * 3 2 1 7 7 C 1.37885 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99823 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46665 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47002 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47063 * 185.36711 * 11 10 9 13 13 C 1.50242 * 110.99721 * 183.68509 * 12 11 10 14 14 C 1.50992 * 102.40010 * 147.28573 * 13 12 11 15 15 H 1.08993 * 110.53822 * 71.10360 * 14 13 12 16 16 C 1.47997 * 126.49742 * 209.11775 * 14 13 12 17 17 O 1.21222 * 127.35429 * 321.59819 * 16 14 13 18 18 N 1.37031 * 105.29812 * 141.58421 * 16 14 13 19 19 C 1.37253 * 112.56601 * 344.58194 * 18 16 14 20 20 O 1.21224 * 127.56881 * 165.20072 * 19 18 16 21 21 C 1.46227 * 104.78046 * 345.07612 * 19 18 16 22 22 H 1.09001 * 107.02747 * 287.50368 * 21 19 18 23 23 C 1.48524 * 133.50171 * 151.37116 * 21 19 18 24 24 H 0.96998 * 119.99970 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47426 * 60.00118 * 9 7 2 26 26 H 1.08999 * 109.47212 * 299.99571 * 9 7 2 27 27 H 1.08993 * 109.47124 * 60.00005 * 10 9 7 28 28 H 1.08999 * 109.47194 * 299.99874 * 10 9 7 29 29 H 1.08998 * 109.47242 * 65.36983 * 11 10 9 30 30 H 1.09003 * 109.46893 * 305.37054 * 11 10 9 31 31 H 1.09000 * 110.82217 * 29.06017 * 13 12 11 32 32 H 1.09001 * 110.99446 * 265.58738 * 13 12 11 33 33 H 0.97002 * 123.71509 * 164.31752 * 18 16 14 34 34 H 1.09002 * 110.41659 * 91.83763 * 23 21 19 35 35 H 1.09004 * 110.41192 * 329.38673 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9872 -0.0001 12 7 2.4293 -6.1007 0.1294 13 6 1.7224 -7.4236 0.0429 14 6 2.7563 -8.3009 -0.6214 15 1 3.5771 -8.5110 0.0643 16 6 2.4921 -9.4705 -1.4889 17 8 1.6231 -10.3049 -1.3540 18 7 3.4392 -9.4089 -2.4773 19 6 4.0520 -8.1826 -2.5438 20 8 5.0757 -7.8986 -3.1277 21 6 3.1963 -7.2948 -1.7578 22 1 2.2924 -7.1229 -2.3423 23 6 3.4527 -6.0647 -0.9659 24 1 -0.4850 0.8400 -0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 0.9278 -5.0874 -0.9345 30 1 0.7829 -5.0046 0.8377 31 1 0.8272 -7.3449 -0.5739 32 1 1.4751 -7.7999 1.0355 33 1 3.6555 -10.1514 -3.0627 34 1 3.3157 -5.1783 -1.5853 35 1 4.4589 -6.0851 -0.5471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388083678.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:37 Heat of formation + Delta-G solvation = -36.694229 kcal Electronic energy + Delta-G solvation = -18244.194765 eV Core-core repulsion = 15243.323091 eV Total energy + Delta-G solvation = -3000.871674 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.67355 -38.91781 -38.64181 -36.01714 -34.21916 -32.40508 -30.27902 -29.64685 -26.57299 -25.19727 -23.94576 -21.72584 -21.49902 -19.91327 -19.42618 -18.26521 -17.99152 -16.43295 -15.97983 -15.95889 -15.69936 -14.97816 -14.70110 -14.52509 -14.04874 -13.92750 -13.35542 -12.77485 -12.47373 -12.27640 -12.07197 -11.57630 -11.38007 -11.19212 -10.88639 -10.75468 -10.69675 -10.53867 -10.47705 -10.45121 -9.74208 -9.38428 -9.07639 -8.42578 -8.36217 -6.01513 -4.03639 1.10497 2.03516 2.26929 3.02751 3.30799 3.38538 3.42733 3.61396 3.80942 4.37755 4.45878 4.50446 4.55869 4.88541 5.06010 5.34779 5.39592 5.47767 5.52001 5.58423 5.69559 5.77715 5.89411 5.99693 6.18656 6.53973 6.57851 6.77587 6.82518 7.09554 7.12380 7.42968 7.65518 7.78651 7.98338 8.41087 9.03750 9.60831 11.09938 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.039362 B = 0.003986 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.180464 B = 7022.866758 C = 7501.045132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.110 4.110 11 C 0.045 3.955 12 N -0.514 5.514 13 C 0.063 3.937 14 C -0.153 4.153 15 H 0.137 0.863 16 C 0.560 3.440 17 O -0.466 6.466 18 N -0.711 5.711 19 C 0.571 3.429 20 O -0.461 6.461 21 C -0.175 4.175 22 H 0.111 0.889 23 C 0.066 3.934 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.017 0.983 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.414 0.586 34 H 0.090 0.910 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.280 -18.214 -2.711 19.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.082 4.082 12 N -0.238 5.238 13 C -0.065 4.065 14 C -0.175 4.175 15 H 0.155 0.845 16 C 0.348 3.652 17 O -0.335 6.335 18 N -0.381 5.381 19 C 0.359 3.641 20 O -0.330 6.330 21 C -0.197 4.197 22 H 0.128 0.872 23 C -0.061 4.061 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.254 0.746 34 H 0.108 0.892 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.395 -18.182 -2.345 19.110 hybrid contribution 0.031 0.430 -1.206 1.280 sum 5.426 -17.752 -3.550 18.899 Atomic orbital electron populations 1.69969 1.06075 1.26500 1.51020 1.25024 0.94833 0.99288 0.95330 0.86549 0.80174 0.83806 0.77563 1.19686 1.21067 1.21012 1.21279 0.93104 0.90984 1.50360 0.92569 1.19078 0.93984 0.91342 0.97201 1.21761 0.99310 0.92624 1.01043 1.22563 0.94367 0.90896 1.00409 1.65664 1.14152 1.01466 1.42519 1.22361 0.94040 0.88469 1.01606 1.22780 1.04080 0.93005 0.97598 0.84543 1.20061 0.78859 0.85723 0.80584 1.90807 1.29633 1.40715 1.72303 1.46437 1.38400 1.16710 1.36601 1.19357 0.83090 0.82448 0.79181 1.90818 1.20999 1.79001 1.42186 1.22178 1.01676 0.98239 0.97642 0.87166 1.21789 0.98529 0.94328 0.91481 0.93070 0.96806 0.96450 0.92161 0.93212 0.94953 0.90245 0.92065 0.88205 0.74605 0.89202 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.09 4.87 -26.73 -0.13 -2.22 16 11 C 0.04 0.69 4.89 -3.82 -0.02 0.67 16 12 N -0.51 -6.40 5.41 -232.89 -1.26 -7.66 16 13 C 0.06 0.63 6.43 -2.96 -0.02 0.61 16 14 C -0.15 -1.33 3.24 -91.29 -0.30 -1.62 16 15 H 0.14 1.04 8.14 -51.93 -0.42 0.61 16 16 C 0.56 5.18 8.29 -11.23 -0.09 5.09 16 17 O -0.47 -5.67 18.02 5.61 0.10 -5.57 16 18 N -0.71 -5.62 5.87 -12.52 -0.07 -5.69 16 19 C 0.57 5.63 8.36 -11.92 -0.10 5.53 16 20 O -0.46 -6.00 18.02 5.61 0.10 -5.90 16 21 C -0.17 -1.68 2.92 -93.26 -0.27 -1.95 16 22 H 0.11 1.03 7.75 -51.93 -0.40 0.63 16 23 C 0.07 0.75 6.16 -4.30 -0.03 0.73 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.05 0.92 6.34 -51.93 -0.33 0.59 16 29 H 0.03 0.48 8.04 -51.93 -0.42 0.07 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.61 7.77 -51.93 -0.40 0.21 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.41 2.46 8.96 -40.82 -0.37 2.10 16 34 H 0.09 1.13 5.91 -51.93 -0.31 0.82 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 293.98 15.07 4.43 4.43 Total: -1.00 -31.69 293.98 -7.22 -38.91 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -4.73 Total: -3.07 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.50 Total: -5.98 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.60 Total: -39.22 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.20 Total: -11.47 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.69 -7.22 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388083678.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.214 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds