Wall clock time and date at job start Mon Mar 30 2020 03:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38015 * 119.52190 * 2 1 4 4 C 1.38856 * 119.36657 * 179.74781 * 3 2 1 5 5 C 1.38702 * 118.45877 * 0.49265 * 4 3 2 6 6 O 1.36011 * 120.49642 * 179.75820 * 5 4 3 7 7 C 1.42895 * 116.99925 * 359.72266 * 6 5 4 8 8 C 1.53006 * 109.47036 * 179.97438 * 7 6 5 9 9 O 1.42897 * 109.46881 * 65.00230 * 8 7 6 10 10 C 1.42904 * 114.00084 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47195 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99950 * 0.02562 * 11 10 9 13 13 C 1.37869 * 119.99953 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00003 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99965 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47037 * 89.99843 * 15 13 11 17 17 H 1.48496 * 109.46967 * 209.99520 * 15 13 11 18 18 H 1.48497 * 109.47019 * 329.99949 * 15 13 11 19 19 C 1.39560 * 119.00595 * 359.48982 * 5 4 3 20 20 N 1.39244 * 119.73244 * 180.25222 * 19 5 4 21 21 N 1.32013 * 119.52491 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.47138 * 270.02608 * 1 2 3 23 23 H 1.09004 * 109.47135 * 30.02335 * 1 2 3 24 24 H 1.08993 * 109.47337 * 150.02030 * 1 2 3 25 25 H 1.07996 * 120.31680 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.77096 * 180.27352 * 4 3 2 27 27 H 1.09001 * 109.46798 * 60.00171 * 7 6 5 28 28 H 1.08993 * 109.47318 * 299.99637 * 7 6 5 29 29 H 1.08992 * 109.47046 * 185.00128 * 8 7 6 30 30 H 1.08997 * 109.47395 * 305.00669 * 8 7 6 31 31 H 1.08997 * 109.46649 * 300.00180 * 10 9 8 32 32 H 1.08996 * 109.47076 * 59.99959 * 10 9 8 33 33 H 0.97000 * 119.99915 * 180.02562 * 14 13 11 34 34 H 0.96997 * 120.00206 * 359.97438 * 20 19 5 35 35 H 0.96995 * 120.00119 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.2010 0.0000 4 6 3.5756 1.1972 0.0053 5 6 4.2333 -0.0240 0.0000 6 8 5.5924 -0.0760 0.0000 7 6 6.2894 1.1715 -0.0006 8 6 7.7974 0.9132 0.0001 9 8 8.1712 0.2708 -1.2204 10 6 9.5674 -0.0163 -1.3224 11 6 9.8470 -0.6887 -2.6418 12 1 9.0393 -0.8775 -3.3335 13 6 11.1339 -1.0618 -2.9663 14 7 11.3778 -1.6490 -4.1174 15 14 12.5309 -0.7346 -1.7701 16 1 12.6876 -1.8988 -0.8616 17 1 13.7913 -0.5242 -2.5267 18 1 12.2245 0.4791 -0.9712 19 6 3.4796 -1.1985 0.0004 20 7 4.1242 -2.4327 0.0004 21 7 2.1576 -1.1487 0.0005 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6445 2.1347 -0.0004 26 1 4.1307 2.1236 0.0099 27 1 6.0180 1.7396 0.8892 28 1 6.0180 1.7389 -0.8907 29 1 8.3283 1.8609 0.0893 30 1 8.0558 0.2713 0.8423 31 1 10.1346 0.9124 -1.2608 32 1 9.8628 -0.6772 -0.5075 33 1 12.2832 -1.9119 -4.3456 34 1 5.0933 -2.4738 -0.0002 35 1 3.6042 -3.2515 0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395454024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:04 Heat of formation + Delta-G solvation = -76.218987 kcal Electronic energy + Delta-G solvation = -17811.443677 eV Core-core repulsion = 14808.858080 eV Total energy + Delta-G solvation = -3002.585596 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60732 -39.48480 -38.31975 -35.87612 -34.90917 -33.01492 -31.64748 -31.42368 -29.60802 -27.35222 -24.79572 -23.98200 -23.36267 -22.43462 -19.24155 -19.11611 -18.54409 -17.74873 -17.70770 -16.73251 -16.54525 -16.25716 -16.05291 -15.23354 -15.17879 -15.05854 -14.75963 -14.52595 -13.82243 -13.55103 -13.35897 -13.10895 -13.05536 -12.75292 -12.61875 -12.14986 -12.01535 -11.81233 -11.53351 -11.37324 -10.95239 -10.59238 -10.39583 -10.20901 -8.38690 -8.37815 -6.47456 0.33248 0.43882 1.32995 1.36596 1.47326 2.18221 2.28602 2.59784 2.87900 2.93970 2.99027 3.62612 3.82424 4.00039 4.12333 4.16165 4.28001 4.42086 4.49534 4.53209 4.57407 4.72875 4.83808 4.88254 4.98542 5.08022 5.16605 5.23169 5.41376 5.65752 5.90066 6.08812 6.53092 6.57007 6.63571 6.71563 7.17126 7.30357 8.78756 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.040774 B = 0.003879 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.540215 B = 7217.353089 C = 7518.255778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.116 3.884 3 C -0.194 4.194 4 C -0.127 4.127 5 C -0.010 4.010 6 O -0.326 6.326 7 C 0.068 3.932 8 C 0.048 3.952 9 O -0.407 6.407 10 C 0.179 3.821 11 C -0.549 4.549 12 H 0.025 0.975 13 C 0.011 3.989 14 N -0.944 5.944 15 Si 0.959 3.041 16 H -0.260 1.260 17 H -0.274 1.274 18 H -0.241 1.241 19 C 0.372 3.628 20 N -0.844 5.844 21 N -0.538 5.538 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.165 0.835 26 H 0.160 0.840 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.012 0.988 33 H 0.273 0.727 34 H 0.414 0.586 35 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.156 7.931 14.067 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.020 4.020 3 C -0.216 4.216 4 C -0.153 4.153 5 C -0.062 4.062 6 O -0.240 6.240 7 C -0.007 4.007 8 C -0.028 4.028 9 O -0.327 6.327 10 C 0.104 3.896 11 C -0.587 4.587 12 H 0.044 0.956 13 C -0.187 4.187 14 N -0.583 5.583 15 Si 0.780 3.220 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.164 1.164 19 C 0.133 3.867 20 N -0.390 5.390 21 N -0.259 5.259 22 H 0.106 0.894 23 H 0.116 0.884 24 H 0.087 0.913 25 H 0.183 0.817 26 H 0.178 0.822 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.244 0.756 35 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -17.494 6.926 13.804 23.336 hybrid contribution 1.599 0.279 -0.045 1.624 sum -15.895 7.205 13.759 22.223 Atomic orbital electron populations 1.20717 0.86415 1.04103 1.03841 1.21467 0.98164 0.87287 0.95117 1.21814 0.93330 0.99965 1.06540 1.21794 0.96115 0.96641 1.00754 1.19598 0.83741 0.94601 1.08237 1.86078 1.14776 1.33587 1.89556 1.22992 0.89938 0.84645 1.03120 1.22765 0.93648 0.98525 0.87874 1.87934 1.26249 1.80008 1.38469 1.20338 0.79293 0.94701 0.95301 1.21182 0.94568 1.40134 1.02785 0.95611 1.25898 1.01559 0.93646 0.97566 1.70042 1.22426 1.41532 1.24297 0.85559 0.77243 0.80509 0.78708 1.18480 1.19885 1.16370 1.18040 0.87972 0.85709 0.95001 1.42161 1.09745 1.04059 1.83029 1.67079 1.05691 1.31406 1.21757 0.89394 0.88435 0.91337 0.81723 0.82247 0.87270 0.91450 0.89205 0.92331 0.96349 0.97005 0.91765 0.75573 0.76224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 10.16 71.24 0.72 -0.64 16 2 C 0.12 2.65 6.78 42.48 0.29 2.94 16 3 C -0.19 -3.92 9.72 22.36 0.22 -3.70 16 4 C -0.13 -2.96 9.14 22.53 0.21 -2.75 16 5 C -0.01 -0.31 6.72 22.70 0.15 -0.16 16 6 O -0.33 -10.57 9.35 -89.04 -0.83 -11.40 16 7 C 0.07 1.80 5.14 71.98 0.37 2.17 16 8 C 0.05 1.53 6.32 71.98 0.45 1.99 16 9 O -0.41 -18.85 10.29 -144.34 -1.49 -20.34 16 10 C 0.18 8.91 4.76 71.24 0.34 9.25 16 11 C -0.55 -33.79 9.99 25.60 0.26 -33.53 16 12 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 13 C 0.01 0.66 5.47 84.65 0.46 1.12 16 14 N -0.94 -59.87 13.96 21.44 0.30 -59.57 16 15 Si 0.96 42.97 27.47 68.60 1.88 44.86 16 16 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 19 C 0.37 11.32 7.77 133.12 1.03 12.36 16 20 N -0.84 -23.19 9.08 -55.07 -0.50 -23.69 16 21 N -0.54 -15.36 10.30 -180.86 -1.86 -17.23 16 22 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.10 0.94 8.07 -2.39 -0.02 0.92 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 26 H 0.16 2.81 6.44 -2.91 -0.02 2.80 16 27 H 0.11 1.97 7.69 -2.39 -0.02 1.95 16 28 H 0.07 1.78 7.71 -2.39 -0.02 1.76 16 29 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 32 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 33 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 34 H 0.41 11.68 8.17 -92.71 -0.76 10.93 16 35 H 0.41 9.50 8.95 -92.71 -0.83 8.67 16 Total: -1.00 -76.87 301.97 1.48 -75.39 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -0.53 Total: 22.93 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 4.50 Total: -10.96 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -2.06 Total: -100.49 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -2.32 Total: -31.74 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.88 Total: 44.86 kcal Total: -76.87 1.48 -75.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395454024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.826 kcal (2) G-P(sol) polarization free energy of solvation -76.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds