Wall clock time and date at job start Mon Mar 30 2020 03:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.63965 * 2 1 4 4 C 1.34777 * 119.99873 * 60.00339 * 3 2 1 5 5 O 1.21440 * 120.00096 * 359.97438 * 4 3 2 6 6 C 1.48826 * 119.99932 * 179.97438 * 4 3 2 7 7 O 1.21498 * 120.00055 * 359.97438 * 6 4 3 8 8 N 1.34777 * 119.99936 * 179.97438 * 6 4 3 9 9 C 1.36124 * 120.00260 * 179.97438 * 8 6 4 10 10 H 1.07999 * 119.99702 * 0.02562 * 9 8 6 11 11 C 1.39584 * 120.00258 * 180.02562 * 9 8 6 12 12 N 1.31012 * 119.99735 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99793 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47488 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46799 * 120.00466 * 13 11 9 16 16 H 1.48500 * 109.46997 * 239.99723 * 13 11 9 17 17 C 1.53017 * 109.64165 * 120.42235 * 2 1 3 18 18 C 1.50069 * 110.14665 * 169.33177 * 17 2 1 19 19 C 1.29444 * 124.07600 * 342.87086 * 18 17 2 20 20 C 1.50063 * 124.07737 * 0.44439 * 19 18 17 21 21 C 1.53396 * 109.64308 * 239.58558 * 2 1 3 22 22 H 1.09003 * 109.46790 * 60.00078 * 1 2 3 23 23 H 1.08991 * 109.47305 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47142 * 300.00137 * 1 2 3 25 25 H 0.96995 * 120.00050 * 239.72454 * 3 2 1 26 26 H 0.96999 * 120.00043 * 0.02562 * 8 6 4 27 27 H 0.97005 * 119.99799 * 179.97438 * 12 11 9 28 28 H 1.09008 * 109.35870 * 289.53677 * 17 2 1 29 29 H 1.09003 * 109.35794 * 49.12442 * 17 2 1 30 30 H 1.07999 * 117.96283 * 162.88670 * 18 17 2 31 31 H 1.08000 * 117.95782 * 180.46530 * 19 18 17 32 32 H 1.08997 * 109.35899 * 103.09634 * 20 19 18 33 33 H 1.08995 * 109.35651 * 222.68996 * 20 19 18 34 34 H 1.09003 * 109.63428 * 292.35067 * 21 2 1 35 35 H 1.08994 * 109.64653 * 52.98067 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0224 1.3798 0.0000 4 6 1.6993 2.2106 1.0109 5 8 0.9996 1.8156 1.9215 6 6 2.2000 3.6121 1.0112 7 8 2.9004 4.0072 0.1004 8 7 1.8764 4.4431 2.0218 9 6 2.3348 5.7248 2.0224 10 1 2.9574 6.0760 1.2128 11 6 2.0001 6.5853 3.0693 12 7 1.2453 6.1590 4.0517 13 14 2.6286 8.3444 3.0697 14 1 3.4541 8.5754 1.8571 15 1 1.4766 9.2815 3.0696 16 1 3.4540 8.5749 4.2824 17 6 2.0444 -0.7297 1.2427 18 6 3.5220 -0.9655 1.1291 19 6 4.1844 -0.8955 0.0192 20 6 3.5690 -0.5595 -1.3075 21 6 2.0457 -0.7314 -1.2459 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 2.5843 1.6943 -0.7254 26 1 1.3176 4.1275 2.7491 27 1 1.0130 6.7569 4.7794 28 1 1.8419 -0.1248 2.1267 29 1 1.5320 -1.6872 1.3375 30 1 4.0667 -1.2089 2.0294 31 1 5.2461 -1.0915 0.0499 32 1 3.8037 0.4736 -1.5635 33 1 3.9761 -1.2207 -2.0725 34 1 1.8011 -1.7913 -1.1758 35 1 1.5868 -0.3045 -2.1376 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398412712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:50 Heat of formation + Delta-G solvation = -65.605511 kcal Electronic energy + Delta-G solvation = -18915.539398 eV Core-core repulsion = 15913.414037 eV Total energy + Delta-G solvation = -3002.125362 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31795 -38.33977 -36.79477 -34.37135 -33.55340 -31.44035 -30.95684 -30.75682 -26.50237 -25.85242 -23.38068 -23.08249 -20.53692 -19.39830 -18.31873 -17.73423 -16.90629 -15.90705 -15.49584 -14.79218 -14.67625 -14.44313 -14.11449 -13.84190 -13.63245 -13.04090 -12.88455 -12.55177 -12.40900 -12.18228 -11.84642 -11.74234 -11.61925 -11.42566 -11.19900 -10.57487 -10.44307 -10.38019 -10.27437 -9.98935 -9.71182 -8.87767 -8.62538 -8.20030 -8.16809 -6.65044 -3.97317 2.40960 2.50747 3.15176 3.17336 3.24024 3.47106 4.08083 4.31422 4.62501 4.73291 4.90625 5.07142 5.19881 5.23020 5.39269 5.40836 5.48041 5.70424 5.76905 5.84084 5.87628 5.99572 6.04042 6.11368 6.22832 6.29680 6.47512 6.75236 6.96515 7.07452 7.33092 7.75082 7.95905 8.36722 8.68884 8.99420 9.35070 9.88122 10.50008 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.037455 B = 0.005253 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.380586 B = 5329.144652 C = 5528.961696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.177 3.823 3 N -0.702 5.702 4 C 0.517 3.483 5 O -0.544 6.544 6 C 0.394 3.606 7 O -0.599 6.599 8 N -0.501 5.501 9 C -0.305 4.305 10 H 0.112 0.888 11 C 0.030 3.970 12 N -0.870 5.870 13 Si 0.938 3.062 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.278 1.278 17 C -0.107 4.107 18 C -0.143 4.143 19 C -0.164 4.164 20 C -0.092 4.092 21 C -0.120 4.120 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.407 0.593 26 H 0.404 0.596 27 H 0.279 0.721 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 -12.811 -6.759 14.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.091 3.909 3 N -0.356 5.356 4 C 0.302 3.698 5 O -0.422 6.422 6 C 0.179 3.821 7 O -0.487 6.487 8 N -0.135 5.135 9 C -0.436 4.436 10 H 0.130 0.870 11 C -0.176 4.176 12 N -0.508 5.508 13 Si 0.763 3.237 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.144 4.144 18 C -0.161 4.161 19 C -0.182 4.182 20 C -0.129 4.129 21 C -0.158 4.158 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.244 0.756 26 H 0.240 0.760 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.874 -12.758 -6.519 14.354 hybrid contribution 0.313 0.768 0.260 0.869 sum 1.188 -11.990 -6.259 13.578 Atomic orbital electron populations 1.22214 0.94173 1.01973 1.03823 1.20304 0.93926 0.81499 0.95189 1.45781 1.53279 1.10685 1.25847 1.20575 0.80046 0.87512 0.81667 1.90610 1.37992 1.77629 1.35978 1.19063 0.89927 0.86263 0.86878 1.90573 1.43449 1.76983 1.37696 1.41563 1.41665 1.10410 1.19882 1.19916 1.29406 0.86132 1.08152 0.87023 1.25570 0.96067 1.01176 0.94796 1.69493 1.33667 1.37680 1.09988 0.85681 0.78719 0.80499 0.78791 1.18753 1.20314 1.20318 1.20941 0.92995 1.00519 0.99964 1.22032 0.96317 1.00129 0.97623 1.21913 0.99355 1.02343 0.94568 1.20487 0.94684 1.01964 0.95761 1.21975 0.95742 1.00892 0.97213 0.92573 0.92146 0.89938 0.75601 0.76027 0.91034 0.88433 0.90366 0.88212 0.88202 0.90625 0.90987 0.90362 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 8.41 37.16 0.31 -1.92 16 2 C 0.18 2.47 0.67 -131.60 -0.09 2.38 16 3 N -0.70 -12.08 4.58 -48.03 -0.22 -12.30 16 4 C 0.52 11.11 7.26 -11.88 -0.09 11.02 16 5 O -0.54 -12.18 12.70 5.42 0.07 -12.12 16 6 C 0.39 9.99 7.82 -11.88 -0.09 9.90 16 7 O -0.60 -16.19 16.03 5.37 0.09 -16.11 16 8 N -0.50 -13.46 5.25 -11.59 -0.06 -13.52 16 9 C -0.31 -8.48 9.67 -15.14 -0.15 -8.63 16 10 H 0.11 3.18 7.15 -52.49 -0.38 2.80 16 11 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 12 N -0.87 -23.44 13.03 55.53 0.72 -22.71 16 13 Si 0.94 20.21 29.56 -169.99 -5.02 15.18 16 14 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 15 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 17 C -0.11 -1.50 4.82 -28.18 -0.14 -1.64 16 18 C -0.14 -1.91 9.68 -35.90 -0.35 -2.26 16 19 C -0.16 -2.01 9.74 -35.90 -0.35 -2.36 16 20 C -0.09 -1.01 5.67 -27.97 -0.16 -1.17 16 21 C -0.12 -1.30 5.05 -26.31 -0.13 -1.44 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.08 1.36 6.18 -51.93 -0.32 1.04 16 25 H 0.41 6.84 6.41 -40.82 -0.26 6.58 16 26 H 0.40 10.92 7.35 -40.82 -0.30 10.62 16 27 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 28 H 0.10 1.67 5.99 -51.92 -0.31 1.36 16 29 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 30 H 0.10 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.10 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.08 0.89 6.78 -51.93 -0.35 0.54 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 289.83 15.07 4.37 4.37 Total: -1.00 -29.97 289.83 -5.81 -35.79 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -4.43 Total: 16.83 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.32 Total: 4.59 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.44 Total: -48.54 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: 0.15 Total: -28.22 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.97 -5.81 -35.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398412712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.820 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds