Wall clock time and date at job start Mon Mar 30 2020 03:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.63965 * 2 1 4 4 C 1.34777 * 119.99873 * 60.00339 * 3 2 1 5 5 O 1.21440 * 120.00096 * 359.97438 * 4 3 2 6 6 C 1.48826 * 119.99932 * 179.97438 * 4 3 2 7 7 O 1.21498 * 120.00055 * 359.97438 * 6 4 3 8 8 N 1.34777 * 119.99936 * 179.97438 * 6 4 3 9 9 C 1.36124 * 120.00260 * 179.97438 * 8 6 4 10 10 H 1.07999 * 119.99702 * 0.02562 * 9 8 6 11 11 C 1.39584 * 120.00258 * 180.02562 * 9 8 6 12 12 N 1.31012 * 119.99735 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99793 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47488 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46799 * 120.00466 * 13 11 9 16 16 H 1.48500 * 109.46997 * 239.99723 * 13 11 9 17 17 C 1.53017 * 109.64165 * 120.42235 * 2 1 3 18 18 C 1.50069 * 110.14665 * 169.33177 * 17 2 1 19 19 C 1.29444 * 124.07600 * 342.87086 * 18 17 2 20 20 C 1.50063 * 124.07737 * 0.44439 * 19 18 17 21 21 C 1.53396 * 109.64308 * 239.58558 * 2 1 3 22 22 H 1.09003 * 109.46790 * 60.00078 * 1 2 3 23 23 H 1.08991 * 109.47305 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47142 * 300.00137 * 1 2 3 25 25 H 0.96995 * 120.00050 * 239.72454 * 3 2 1 26 26 H 0.96999 * 120.00043 * 0.02562 * 8 6 4 27 27 H 0.97005 * 119.99799 * 179.97438 * 12 11 9 28 28 H 1.09008 * 109.35870 * 289.53677 * 17 2 1 29 29 H 1.09003 * 109.35794 * 49.12442 * 17 2 1 30 30 H 1.07999 * 117.96283 * 162.88670 * 18 17 2 31 31 H 1.08000 * 117.95782 * 180.46530 * 19 18 17 32 32 H 1.08997 * 109.35899 * 103.09634 * 20 19 18 33 33 H 1.08995 * 109.35651 * 222.68996 * 20 19 18 34 34 H 1.09003 * 109.63428 * 292.35067 * 21 2 1 35 35 H 1.08994 * 109.64653 * 52.98067 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0224 1.3798 0.0000 4 6 1.6993 2.2106 1.0109 5 8 0.9996 1.8156 1.9215 6 6 2.2000 3.6121 1.0112 7 8 2.9004 4.0072 0.1004 8 7 1.8764 4.4431 2.0218 9 6 2.3348 5.7248 2.0224 10 1 2.9574 6.0760 1.2128 11 6 2.0001 6.5853 3.0693 12 7 1.2453 6.1590 4.0517 13 14 2.6286 8.3444 3.0697 14 1 3.4541 8.5754 1.8571 15 1 1.4766 9.2815 3.0696 16 1 3.4540 8.5749 4.2824 17 6 2.0444 -0.7297 1.2427 18 6 3.5220 -0.9655 1.1291 19 6 4.1844 -0.8955 0.0192 20 6 3.5690 -0.5595 -1.3075 21 6 2.0457 -0.7314 -1.2459 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 2.5843 1.6943 -0.7254 26 1 1.3176 4.1275 2.7491 27 1 1.0130 6.7569 4.7794 28 1 1.8419 -0.1248 2.1267 29 1 1.5320 -1.6872 1.3375 30 1 4.0667 -1.2089 2.0294 31 1 5.2461 -1.0915 0.0499 32 1 3.8037 0.4736 -1.5635 33 1 3.9761 -1.2207 -2.0725 34 1 1.8011 -1.7913 -1.1758 35 1 1.5868 -0.3045 -2.1376 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398412712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:50 Heat of formation + Delta-G solvation = -86.468752 kcal Electronic energy + Delta-G solvation = -18916.444096 eV Core-core repulsion = 15913.414037 eV Total energy + Delta-G solvation = -3003.030060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.78124 -40.00673 -38.48701 -36.35740 -34.90711 -33.44898 -32.29269 -31.73892 -27.85928 -27.54698 -25.08641 -24.12102 -21.87366 -20.99171 -20.36123 -19.10478 -18.51120 -17.38157 -16.93336 -16.51010 -16.48107 -15.82065 -15.65109 -15.03970 -14.90046 -14.71713 -14.55226 -13.78582 -13.68612 -13.50238 -13.29235 -12.99612 -12.89363 -12.75702 -12.55721 -12.39141 -12.12097 -12.06325 -11.67439 -11.29574 -11.27424 -10.26816 -10.13011 -10.05507 -9.82315 -8.65596 -6.10684 0.66011 1.40734 1.42412 1.46153 1.56880 1.88481 2.30293 2.41375 3.16426 3.28952 3.64238 3.76003 3.94544 4.05928 4.23341 4.40018 4.44730 4.56512 4.70209 4.77889 4.85217 4.90568 5.02743 5.09489 5.22195 5.25111 5.25754 5.33836 5.60182 5.70250 5.76312 6.07672 6.23425 6.45805 6.84257 7.08689 7.31060 7.81786 8.50532 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.037455 B = 0.005253 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.380586 B = 5329.144652 C = 5528.961696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.167 3.833 3 N -0.682 5.682 4 C 0.522 3.478 5 O -0.556 6.556 6 C 0.388 3.612 7 O -0.619 6.619 8 N -0.513 5.513 9 C -0.346 4.346 10 H 0.097 0.903 11 C -0.005 4.005 12 N -0.897 5.897 13 Si 1.010 2.990 14 H -0.264 1.264 15 H -0.265 1.265 16 H -0.266 1.266 17 C -0.104 4.104 18 C -0.167 4.167 19 C -0.158 4.158 20 C -0.095 4.095 21 C -0.112 4.112 22 H 0.060 0.940 23 H 0.092 0.908 24 H 0.048 0.952 25 H 0.410 0.590 26 H 0.400 0.600 27 H 0.288 0.712 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 -13.706 -7.988 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.083 3.917 3 N -0.336 5.336 4 C 0.305 3.695 5 O -0.435 6.435 6 C 0.173 3.827 7 O -0.509 6.509 8 N -0.147 5.147 9 C -0.475 4.475 10 H 0.115 0.885 11 C -0.209 4.209 12 N -0.535 5.535 13 Si 0.831 3.169 14 H -0.188 1.188 15 H -0.190 1.190 16 H -0.191 1.191 17 C -0.141 4.141 18 C -0.185 4.185 19 C -0.176 4.176 20 C -0.132 4.132 21 C -0.150 4.150 22 H 0.079 0.921 23 H 0.110 0.890 24 H 0.067 0.933 25 H 0.248 0.752 26 H 0.235 0.765 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.154 -13.691 -7.762 15.780 hybrid contribution 0.233 0.931 0.601 1.132 sum 1.387 -12.760 -7.161 14.698 Atomic orbital electron populations 1.22186 0.93732 1.03632 1.02351 1.20704 0.94351 0.79495 0.97176 1.45814 1.51967 1.11625 1.24153 1.19919 0.80415 0.86403 0.82812 1.90621 1.38689 1.77455 1.36752 1.19838 0.89062 0.87810 0.85981 1.90533 1.44150 1.77998 1.38215 1.41651 1.42072 1.10702 1.20257 1.19990 1.31249 0.87212 1.09087 0.88535 1.26525 0.95519 1.05192 0.93673 1.69558 1.34041 1.39455 1.10477 0.84645 0.78447 0.74893 0.78944 1.18840 1.19027 1.19083 1.20872 0.93985 1.00918 0.98366 1.22076 0.96075 1.02028 0.98319 1.22191 0.99987 1.00543 0.94854 1.20582 0.94868 1.02093 0.95685 1.22000 0.95494 1.01820 0.95663 0.92083 0.88957 0.93292 0.75226 0.76522 0.90169 0.92100 0.88079 0.88288 0.87074 0.91528 0.88077 0.87898 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 8.41 71.98 0.61 -3.51 16 2 C 0.17 4.38 0.67 3.74 0.00 4.38 16 3 N -0.68 -23.16 4.58 -424.18 -1.94 -25.10 16 4 C 0.52 22.86 7.26 87.08 0.63 23.49 16 5 O -0.56 -25.64 12.70 -3.53 -0.04 -25.69 16 6 C 0.39 20.27 7.82 87.08 0.68 20.95 16 7 O -0.62 -34.30 16.03 -3.71 -0.06 -34.36 16 8 N -0.51 -28.62 5.25 -308.88 -1.62 -30.24 16 9 C -0.35 -19.77 9.67 84.35 0.82 -18.95 16 10 H 0.10 5.70 7.15 -2.91 -0.02 5.67 16 11 C -0.01 -0.27 5.51 85.14 0.47 0.20 16 12 N -0.90 -48.85 13.03 21.76 0.28 -48.57 16 13 Si 1.01 41.31 29.56 68.60 2.03 43.34 16 14 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 15 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 16 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 17 C -0.10 -2.82 4.82 29.66 0.14 -2.68 16 18 C -0.17 -4.27 9.68 27.04 0.26 -4.01 16 19 C -0.16 -3.52 9.74 27.04 0.26 -3.26 16 20 C -0.10 -1.78 5.67 29.79 0.17 -1.61 16 21 C -0.11 -2.02 5.05 30.87 0.16 -1.87 16 22 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.05 1.60 6.18 -2.39 -0.01 1.58 16 25 H 0.41 13.44 6.41 -92.71 -0.59 12.85 16 26 H 0.40 22.56 7.35 -92.71 -0.68 21.88 16 27 H 0.29 14.31 8.30 -92.70 -0.77 13.54 16 28 H 0.06 2.13 5.99 -2.38 -0.01 2.11 16 29 H 0.10 2.22 8.11 -2.39 -0.02 2.20 16 30 H 0.10 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.11 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.07 1.40 6.78 -2.39 -0.02 1.39 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 1.44 8.13 -2.39 -0.02 1.42 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -66.28 289.83 2.69 -63.59 By element: Atomic # 1 Polarization: 44.05 SS G_CDS: -0.15 Total: 43.89 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 4.20 Total: 13.13 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -3.28 Total: -103.91 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -0.10 Total: -60.04 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -66.28 2.69 -63.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398412712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.876 kcal (2) G-P(sol) polarization free energy of solvation -66.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds