Wall clock time and date at job start Mon Mar 30 2020 03:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.63706 * 2 1 4 4 C 1.34776 * 120.00350 * 300.42160 * 3 2 1 5 5 O 1.21443 * 119.99871 * 0.02562 * 4 3 2 6 6 C 1.48836 * 120.00072 * 180.02562 * 4 3 2 7 7 O 1.21496 * 119.99709 * 359.97438 * 6 4 3 8 8 N 1.34771 * 119.99705 * 180.02562 * 6 4 3 9 9 C 1.36125 * 119.99700 * 180.02562 * 8 6 4 10 10 H 1.07997 * 120.00027 * 359.97438 * 9 8 6 11 11 C 1.39589 * 119.99647 * 179.97438 * 9 8 6 12 12 N 1.31009 * 120.00215 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99627 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46845 * 90.00416 * 13 11 9 15 15 H 1.48503 * 109.47399 * 209.99905 * 13 11 9 16 16 H 1.48498 * 109.47295 * 330.00512 * 13 11 9 17 17 C 1.53021 * 109.81710 * 239.47282 * 2 1 3 18 18 C 1.50062 * 110.14655 * 190.77614 * 17 2 1 19 19 C 1.29443 * 124.07703 * 17.12986 * 18 17 2 20 20 C 1.50061 * 124.07567 * 359.53295 * 19 18 17 21 21 C 1.53029 * 110.14833 * 17.12665 * 20 19 18 22 22 H 1.09002 * 109.47176 * 59.99852 * 1 2 3 23 23 H 1.09005 * 109.46911 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47006 * 299.99847 * 1 2 3 25 25 H 0.97006 * 119.99993 * 120.41932 * 3 2 1 26 26 H 0.97001 * 120.00536 * 359.97438 * 8 6 4 27 27 H 0.97001 * 120.00461 * 359.97438 * 12 11 9 28 28 H 1.09007 * 109.36022 * 310.98571 * 17 2 1 29 29 H 1.09004 * 109.35784 * 70.56101 * 17 2 1 30 30 H 1.08001 * 117.95837 * 197.10793 * 18 17 2 31 31 H 1.08004 * 117.95979 * 179.55371 * 19 18 17 32 32 H 1.09004 * 109.36006 * 256.92657 * 20 19 18 33 33 H 1.08996 * 109.24869 * 137.26906 * 20 19 18 34 34 H 1.08994 * 109.64431 * 190.87863 * 21 20 19 35 35 H 1.09002 * 109.63988 * 70.25043 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0224 1.3798 0.0000 4 6 1.6923 2.2131 -1.0065 5 8 0.9862 1.8204 -1.9132 6 6 2.1929 3.6147 -1.0067 7 8 2.8989 4.0077 -0.0993 8 7 1.8623 4.4482 -2.0129 9 6 2.3207 5.7299 -2.0134 10 1 2.9489 6.0791 -1.2072 11 6 1.9787 6.5930 -3.0558 12 7 1.2171 6.1693 -4.0339 13 14 2.6071 8.3521 -3.0561 14 1 3.9104 8.4120 -3.7655 15 1 1.6268 9.2279 -3.7470 16 1 2.7838 8.8149 -1.6562 17 6 2.0489 -0.7312 -1.2400 18 6 3.5261 -0.9668 -1.1209 19 6 4.1845 -0.8955 -0.0088 20 6 3.5644 -0.5575 1.3153 21 6 2.0457 -0.7315 1.2458 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 2.5860 1.6936 0.7245 26 1 1.2984 4.1345 -2.7371 27 1 0.8911 5.2557 -4.0340 28 1 1.5368 -1.6888 -1.3355 29 1 1.8494 -0.1275 -2.1254 30 1 4.0738 -1.2114 -2.0190 31 1 5.2464 -1.0912 -0.0355 32 1 3.7983 0.4761 1.5704 33 1 3.9693 -1.2191 2.0810 34 1 1.5868 -0.3046 2.1375 35 1 1.8011 -1.7914 1.1757 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398412726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:51 Heat of formation + Delta-G solvation = -86.879616 kcal Electronic energy + Delta-G solvation = -18957.369345 eV Core-core repulsion = 15954.321469 eV Total energy + Delta-G solvation = -3003.047876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.88933 -40.17076 -38.61144 -36.74086 -34.98980 -33.29334 -32.36276 -31.80292 -27.66453 -27.57765 -25.16850 -24.16021 -22.11383 -21.16105 -20.29723 -19.52479 -18.78477 -17.29917 -17.03529 -16.72631 -16.59236 -15.82980 -15.50936 -15.14044 -15.11035 -14.88338 -14.64723 -13.84566 -13.56107 -13.49244 -13.34772 -12.97432 -12.89480 -12.79725 -12.46950 -12.24175 -12.02366 -11.89193 -11.67469 -11.34491 -11.32163 -10.35702 -10.21457 -10.14021 -9.87288 -9.15365 -6.23440 0.55521 1.38463 1.53126 1.62918 1.75156 1.86177 2.35510 2.40918 3.09451 3.11114 3.56446 3.71549 3.83446 3.90301 4.19230 4.35333 4.40038 4.52001 4.65232 4.73041 4.80415 4.85888 4.98792 5.03948 5.18026 5.21037 5.28028 5.38957 5.52948 5.71157 5.72089 6.03043 6.10979 6.35720 6.48350 6.96856 7.18330 7.61182 8.28733 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.037502 B = 0.005274 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.452731 B = 5308.173740 C = 5511.938630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.167 3.833 3 N -0.680 5.680 4 C 0.522 3.478 5 O -0.556 6.556 6 C 0.394 3.606 7 O -0.612 6.612 8 N -0.527 5.527 9 C -0.417 4.417 10 H 0.092 0.908 11 C -0.032 4.032 12 N -0.887 5.887 13 Si 1.145 2.855 14 H -0.265 1.265 15 H -0.270 1.270 16 H -0.268 1.268 17 C -0.103 4.103 18 C -0.168 4.168 19 C -0.158 4.158 20 C -0.096 4.096 21 C -0.113 4.113 22 H 0.048 0.952 23 H 0.093 0.907 24 H 0.060 0.940 25 H 0.411 0.589 26 H 0.388 0.612 27 H 0.261 0.739 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 -14.403 8.801 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.083 3.917 3 N -0.333 5.333 4 C 0.305 3.695 5 O -0.435 6.435 6 C 0.179 3.821 7 O -0.501 6.501 8 N -0.163 5.163 9 C -0.546 4.546 10 H 0.110 0.890 11 C -0.234 4.234 12 N -0.523 5.523 13 Si 0.961 3.039 14 H -0.190 1.190 15 H -0.194 1.194 16 H -0.193 1.193 17 C -0.140 4.140 18 C -0.186 4.186 19 C -0.176 4.176 20 C -0.133 4.133 21 C -0.150 4.150 22 H 0.067 0.933 23 H 0.111 0.889 24 H 0.079 0.921 25 H 0.248 0.752 26 H 0.223 0.777 27 H 0.073 0.927 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.572 -13.061 7.908 15.349 hybrid contribution -0.002 -1.408 0.358 1.453 sum 1.570 -14.469 8.266 16.738 Atomic orbital electron populations 1.22190 0.93621 1.03738 1.02364 1.20724 0.94397 0.79328 0.97289 1.45823 1.51592 1.11587 1.24339 1.19856 0.80514 0.86248 0.82903 1.90620 1.38479 1.77552 1.36886 1.19817 0.88778 0.87748 0.85752 1.90544 1.43438 1.78043 1.38088 1.41670 1.42614 1.11119 1.20933 1.20836 1.33445 0.88055 1.12305 0.88992 1.28412 0.94576 1.10195 0.90208 1.70764 1.30514 1.19022 1.32013 0.82537 0.76583 0.67373 0.77358 1.19021 1.19447 1.19304 1.20861 0.94016 1.00944 0.98228 1.22073 0.96062 1.02111 0.98333 1.22207 1.00038 1.00459 0.94850 1.20531 0.94870 1.02087 0.95773 1.21935 0.95559 1.01888 0.95631 0.93259 0.88851 0.92072 0.75177 0.77705 0.92721 0.87970 0.92214 0.88250 0.87049 0.91530 0.87986 0.89420 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 8.42 71.98 0.61 -3.42 16 2 C 0.17 4.27 0.67 3.74 0.00 4.27 16 3 N -0.68 -22.68 4.59 -424.18 -1.94 -24.63 16 4 C 0.52 22.47 7.25 87.08 0.63 23.10 16 5 O -0.56 -24.99 12.72 -3.54 -0.04 -25.04 16 6 C 0.39 20.37 7.82 87.08 0.68 21.05 16 7 O -0.61 -33.84 16.03 -3.70 -0.06 -33.89 16 8 N -0.53 -29.01 5.24 -308.88 -1.62 -30.63 16 9 C -0.42 -23.92 9.67 84.35 0.82 -23.11 16 10 H 0.09 5.48 7.15 -2.91 -0.02 5.46 16 11 C -0.03 -1.72 5.51 85.14 0.47 -1.25 16 12 N -0.89 -49.99 13.66 21.77 0.30 -49.69 16 13 Si 1.14 46.67 29.93 68.60 2.05 48.72 16 14 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 15 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 16 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 17 C -0.10 -2.73 4.83 29.66 0.14 -2.59 16 18 C -0.17 -4.20 9.68 27.04 0.26 -3.94 16 19 C -0.16 -3.44 9.74 27.04 0.26 -3.18 16 20 C -0.10 -1.74 5.67 29.66 0.17 -1.58 16 21 C -0.11 -1.97 5.01 30.73 0.15 -1.82 16 22 H 0.05 1.57 6.15 -2.39 -0.01 1.56 16 23 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.41 13.25 6.40 -92.70 -0.59 12.66 16 26 H 0.39 20.97 6.18 -92.71 -0.57 20.39 16 27 H 0.26 14.81 6.78 -92.71 -0.63 14.19 16 28 H 0.10 2.18 8.11 -2.38 -0.02 2.16 16 29 H 0.06 2.04 6.04 -2.39 -0.01 2.02 16 30 H 0.10 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.11 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.07 1.37 6.78 -2.38 -0.02 1.36 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.40 8.12 -2.39 -0.02 1.38 16 Total: -1.00 -68.04 288.14 2.97 -65.07 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: 0.10 Total: 42.53 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 4.20 Total: 7.56 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -3.27 Total: -104.95 kcal Atomic # 8 Polarization: -58.83 SS G_CDS: -0.10 Total: -58.93 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.05 Total: 48.72 kcal Total: -68.04 2.97 -65.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398412726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.813 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds