Wall clock time and date at job start Mon Mar 30 2020 03:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86803 * 119.99714 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99853 * 3 2 1 5 5 H 1.48492 * 109.47096 * 30.00115 * 3 2 1 6 6 H 1.48501 * 109.46810 * 150.00468 * 3 2 1 7 7 C 1.39582 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00388 * 179.97438 * 7 2 1 9 9 N 1.36126 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99762 * 180.27850 * 9 7 2 11 11 O 1.21503 * 120.00321 * 359.71737 * 10 9 7 12 12 C 1.48832 * 119.99765 * 179.71995 * 10 9 7 13 13 O 1.21443 * 119.99877 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00135 * 179.97438 * 12 10 9 15 15 C 1.47026 * 125.64539 * 0.02862 * 14 12 10 16 16 C 1.54331 * 107.26876 * 178.90202 * 15 14 12 17 17 C 1.55155 * 102.94158 * 337.80371 * 16 15 14 18 18 H 1.08998 * 111.00954 * 277.39107 * 17 16 15 19 19 C 1.53003 * 111.00250 * 153.57610 * 17 16 15 20 20 C 1.53003 * 117.49916 * 128.75041 * 19 17 16 21 21 C 1.52998 * 117.49720 * 60.08571 * 19 17 16 22 22 C 1.47422 * 125.65031 * 179.71733 * 14 12 10 23 23 H 0.96999 * 120.00097 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99691 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.88089 * 298.31641 * 15 14 12 26 26 H 1.08998 * 109.88153 * 59.33559 * 15 14 12 27 27 H 1.08995 * 110.71848 * 96.16996 * 16 15 14 28 28 H 1.09004 * 110.71887 * 219.44312 * 16 15 14 29 29 H 1.09001 * 115.54983 * 274.42159 * 19 17 16 30 30 H 1.08997 * 117.49589 * 359.97438 * 20 19 17 31 31 H 1.08996 * 117.49748 * 145.01952 * 20 19 17 32 32 H 1.09000 * 117.50187 * 214.97692 * 21 19 17 33 33 H 1.09000 * 117.49872 * 0.02562 * 21 19 17 34 34 H 1.08998 * 110.36478 * 323.00388 * 22 14 12 35 35 H 1.08998 * 110.36606 * 85.32783 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 1.4415 2.6526 0.7000 6 1 3.5417 1.4402 0.7000 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3275 -2.3877 -0.0016 10 6 2.0015 -3.5548 0.0036 11 8 3.2165 -3.5548 0.0040 12 6 1.2573 -4.8438 0.0087 13 8 0.0429 -4.8438 0.0078 14 7 1.9312 -6.0109 0.0133 15 6 3.3943 -6.1556 0.0145 16 6 3.7053 -7.6668 0.0485 17 6 2.4047 -8.2761 0.6357 18 1 2.3997 -8.2117 1.7238 19 6 2.2199 -9.7230 0.1740 20 6 1.9513 -10.7786 1.2485 21 6 3.3111 -10.7284 0.5470 22 6 1.3234 -7.3540 0.0246 23 1 -0.4850 0.8400 -0.0004 24 1 0.3575 -2.3877 -0.0016 25 1 3.8114 -5.7115 -0.8894 26 1 3.8143 -5.6685 0.8945 27 1 3.8888 -8.0455 -0.9570 28 1 4.5551 -7.8711 0.6998 29 1 1.7272 -9.8495 -0.7901 30 1 1.9068 -10.4423 2.2843 31 1 1.2823 -11.5997 0.9912 32 1 3.5360 -11.5168 -0.1713 33 1 4.1604 -10.3592 1.1217 34 1 0.4261 -7.3591 0.6434 35 1 1.0868 -7.6718 -0.9908 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400358960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:29 Heat of formation + Delta-G solvation = -67.456970 kcal Electronic energy + Delta-G solvation = -18293.809538 eV Core-core repulsion = 15291.603891 eV Total energy + Delta-G solvation = -3002.205647 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.54827 -39.84438 -38.79185 -37.26784 -36.17695 -33.51426 -32.26318 -30.15425 -27.96784 -25.88436 -23.52913 -23.21323 -22.74417 -20.95771 -20.70508 -19.99397 -18.37395 -17.82047 -17.26507 -16.79557 -16.46401 -16.03244 -15.78856 -15.19206 -14.76198 -14.63953 -14.37940 -13.93686 -13.70184 -13.65852 -13.14741 -12.97465 -12.59287 -12.54661 -12.32777 -12.26578 -12.10637 -12.03165 -11.68053 -11.57773 -11.08391 -10.72138 -10.28860 -10.16069 -9.78621 -8.66431 -6.11440 0.56587 1.39657 1.46290 1.54063 1.68536 2.26807 2.33553 2.87745 3.08688 3.13757 3.56289 3.61677 3.80509 3.98957 4.12027 4.28002 4.28691 4.30350 4.52376 4.60054 4.69416 4.88469 4.92440 4.97617 5.04456 5.14020 5.18995 5.24175 5.33581 5.36353 5.45127 5.67822 6.15408 6.31104 6.72278 6.94674 7.26601 7.78550 8.49723 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.058424 B = 0.004196 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.137916 B = 6671.908669 C = 7050.843387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.006 4.006 3 Si 1.012 2.988 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.344 4.344 8 H 0.100 0.900 9 N -0.513 5.513 10 C 0.392 3.608 11 O -0.605 6.605 12 C 0.525 3.475 13 O -0.572 6.572 14 N -0.596 5.596 15 C 0.110 3.890 16 C -0.111 4.111 17 C -0.058 4.058 18 H 0.085 0.915 19 C -0.149 4.149 20 C -0.182 4.182 21 C -0.166 4.166 22 C 0.106 3.894 23 H 0.289 0.711 24 H 0.399 0.601 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.621 -17.631 0.819 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.210 4.210 3 Si 0.832 3.168 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.474 4.474 8 H 0.118 0.882 9 N -0.147 5.147 10 C 0.177 3.823 11 O -0.494 6.494 12 C 0.310 3.690 13 O -0.452 6.452 14 N -0.329 5.329 15 C -0.012 4.012 16 C -0.149 4.149 17 C -0.078 4.078 18 H 0.103 0.897 19 C -0.167 4.167 20 C -0.219 4.219 21 C -0.203 4.203 22 C -0.015 4.015 23 H 0.099 0.901 24 H 0.234 0.766 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.572 -17.429 0.816 18.316 hybrid contribution -0.565 1.041 -0.023 1.185 sum 5.007 -16.388 0.793 17.154 Atomic orbital electron populations 1.69558 1.07899 1.30809 1.45298 1.26572 0.96513 1.03536 0.94396 0.84671 0.77986 0.74895 0.79204 1.18924 1.19125 1.18690 1.19985 0.93679 0.82957 1.50770 0.88229 1.41649 1.10150 1.04741 1.58179 1.19463 0.87962 0.84968 0.89885 1.90532 1.13418 1.87007 1.58409 1.19956 0.86629 0.85156 0.77257 1.90667 1.14559 1.87907 1.52116 1.48260 1.09304 1.04915 1.70397 1.22193 0.78376 0.98338 1.02319 1.22755 0.98070 0.90537 1.03496 1.21823 0.93508 0.92394 1.00028 0.89689 1.22062 1.05458 0.88896 1.00309 1.23125 1.00057 1.01191 0.97492 1.23027 0.92550 1.01136 1.03578 1.22504 0.97359 0.79824 1.01860 0.90110 0.76646 0.92077 0.92132 0.88895 0.87811 0.87018 0.88865 0.87988 0.87647 0.88218 0.91232 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.17 13.03 21.76 0.28 -48.89 16 2 C -0.01 -0.33 5.51 85.14 0.47 0.14 16 3 Si 1.01 41.23 29.56 68.60 2.03 43.25 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.34 -19.71 9.67 84.35 0.82 -18.90 16 8 H 0.10 5.82 7.15 -2.91 -0.02 5.80 16 9 N -0.51 -29.08 5.25 -308.87 -1.62 -30.70 16 10 C 0.39 20.95 7.78 87.08 0.68 21.63 16 11 O -0.60 -33.22 13.66 -3.73 -0.05 -33.27 16 12 C 0.52 24.73 7.89 87.08 0.69 25.42 16 13 O -0.57 -29.01 16.73 -3.54 -0.06 -29.07 16 14 N -0.60 -22.06 3.33 -814.48 -2.71 -24.77 16 15 C 0.11 3.49 5.49 86.73 0.48 3.97 16 16 C -0.11 -2.22 6.15 31.78 0.20 -2.03 16 17 C -0.06 -1.17 3.20 -9.48 -0.03 -1.20 16 18 H 0.08 1.72 7.97 -2.39 -0.02 1.70 16 19 C -0.15 -2.24 5.26 -10.79 -0.06 -2.29 16 20 C -0.18 -2.40 10.20 30.62 0.31 -2.09 16 21 C -0.17 -1.98 9.96 30.62 0.31 -1.67 16 22 C 0.11 2.94 6.37 86.78 0.55 3.50 16 23 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 24 H 0.40 23.00 7.35 -92.71 -0.68 22.31 16 25 H 0.06 2.13 7.69 -2.39 -0.02 2.11 16 26 H 0.06 2.12 7.56 -2.39 -0.02 2.11 16 27 H 0.09 1.61 8.04 -2.39 -0.02 1.59 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.11 1.61 7.92 -2.39 -0.02 1.60 16 30 H 0.09 1.26 8.08 -2.39 -0.02 1.24 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 2.06 8.04 -2.39 -0.02 2.04 16 35 H 0.08 2.04 7.87 -2.39 -0.02 2.02 16 Total: -1.00 -67.59 298.90 2.70 -64.89 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.42 Total: 32.08 kcal Atomic # 6 Polarization: 22.08 SS G_CDS: 4.41 Total: 26.48 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -4.05 Total: -104.36 kcal Atomic # 8 Polarization: -62.23 SS G_CDS: -0.11 Total: -62.34 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -67.59 2.70 -64.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400358960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.565 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds