Wall clock time and date at job start Mon Mar 30 2020 03:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30174 * 126.80419 * 2 1 4 4 O 1.20924 * 111.60668 * 179.97438 * 3 2 1 5 5 C 1.34039 * 111.56691 * 359.76932 * 4 3 2 6 6 C 1.35455 * 106.44479 * 0.37097 * 5 4 3 7 7 C 1.50695 * 128.00519 * 179.91017 * 6 5 4 8 8 N 1.46900 * 109.46951 * 105.23358 * 7 6 5 9 9 C 1.47445 * 110.99928 * 284.44048 * 8 7 6 10 10 C 1.54320 * 107.23426 * 236.74149 * 9 8 7 11 11 C 1.55145 * 103.17613 * 337.63118 * 10 9 8 12 12 O 1.42904 * 110.98583 * 277.64780 * 11 10 9 13 13 C 1.50698 * 110.99131 * 153.83251 * 11 10 9 14 14 H 1.07998 * 119.99664 * 241.44874 * 13 11 10 15 15 C 1.37881 * 120.00094 * 61.45111 * 13 11 10 16 16 N 1.31514 * 119.99902 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99975 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47226 * 59.99790 * 17 15 13 19 19 H 1.48499 * 109.47156 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47098 * 299.99889 * 17 15 13 21 21 C 1.47849 * 111.00222 * 163.59726 * 8 7 6 22 22 H 1.08994 * 109.47163 * 274.95909 * 1 2 3 23 23 H 1.09005 * 109.47022 * 34.95925 * 1 2 3 24 24 H 1.08999 * 109.47127 * 154.95507 * 1 2 3 25 25 H 1.07998 * 126.77916 * 180.29026 * 5 4 3 26 26 H 1.09001 * 109.47678 * 345.23141 * 7 6 5 27 27 H 1.09002 * 109.47338 * 225.22966 * 7 6 5 28 28 H 1.09002 * 109.89016 * 117.33573 * 9 8 7 29 29 H 1.08998 * 110.02308 * 356.21929 * 9 8 7 30 30 H 1.08998 * 110.70914 * 96.09833 * 10 9 8 31 31 H 1.08997 * 110.70618 * 219.15691 * 10 9 8 32 32 H 0.96696 * 114.00334 * 298.54595 * 12 11 10 33 33 H 0.96999 * 119.99794 * 179.97438 * 16 15 13 34 34 H 1.08995 * 110.37287 * 265.19339 * 21 8 7 35 35 H 1.09007 * 110.37204 * 27.42326 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0059 6 6 2.3539 -1.1321 0.0006 7 6 1.9591 -2.5864 0.0014 8 7 1.4727 -2.9609 1.3360 9 6 2.5924 -3.1115 2.2834 10 6 2.5111 -4.5389 2.8642 11 6 1.0244 -4.9250 2.6467 12 8 0.2003 -4.3942 3.6866 13 6 0.8643 -6.4200 2.5440 14 1 0.4738 -6.8603 1.6385 15 6 1.2164 -7.2256 3.6062 16 7 1.6914 -6.6893 4.7091 17 14 1.0187 -9.0787 3.4786 18 1 1.8429 -9.5881 2.3533 19 1 1.4641 -9.7124 4.7456 20 1 -0.4086 -9.4086 3.2358 21 6 0.7219 -4.2336 1.2885 22 1 -0.3633 0.0888 1.0238 23 1 -0.3633 0.8423 -0.5889 24 1 -0.3633 -0.9310 -0.4350 25 1 4.5339 -1.1535 0.0119 26 1 2.8241 -3.1980 -0.2549 27 1 1.1691 -2.7489 -0.7319 28 1 2.5007 -2.3790 3.0855 29 1 3.5413 -2.9759 1.7644 30 1 3.1688 -5.2152 2.3182 31 1 2.7577 -4.5376 3.9259 32 1 0.4206 -4.7222 4.5691 33 1 1.9388 -7.2560 5.4564 34 1 -0.3464 -4.0405 1.1911 35 1 1.0724 -4.8503 0.4608 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592523843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:14 Heat of formation + Delta-G solvation = 14.492397 kcal Electronic energy + Delta-G solvation = -18943.805268 eV Core-core repulsion = 15945.153213 eV Total energy + Delta-G solvation = -2998.652056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.74743 -38.47543 -35.51937 -34.11395 -32.16825 -32.01333 -29.61214 -28.52274 -28.07759 -26.02170 -24.12868 -21.55929 -21.13057 -19.91732 -19.60209 -17.43124 -17.25651 -16.95837 -15.35518 -14.91898 -14.74218 -14.63802 -14.11485 -13.53398 -13.19106 -13.05506 -12.57681 -12.41645 -12.28667 -12.06602 -11.64037 -11.37866 -11.25927 -10.99590 -10.89072 -10.76068 -10.48027 -10.35729 -9.88495 -9.65720 -9.36434 -9.17129 -8.62531 -8.11283 -7.68962 -6.24049 -4.32671 1.63323 2.38514 3.21019 3.26540 3.29057 3.39862 4.25814 4.32852 4.65688 4.77558 5.02508 5.03899 5.32290 5.55476 5.62855 5.66660 5.70941 5.80008 5.88881 5.93344 6.00886 6.03986 6.16534 6.33465 6.41813 6.61968 6.82235 7.02446 7.36965 7.45516 7.57194 7.68045 7.78925 8.13025 8.42323 8.69520 9.36169 9.49026 10.82836 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.045259 B = 0.005088 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.515032 B = 5501.779472 C = 5624.202268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.038 3.962 3 N -0.378 5.378 4 O 0.090 5.910 5 C -0.066 4.066 6 C -0.176 4.176 7 C 0.123 3.877 8 N -0.521 5.521 9 C 0.046 3.954 10 C -0.145 4.145 11 C 0.253 3.747 12 O -0.579 6.579 13 C -0.537 4.537 14 H 0.060 0.940 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.059 3.941 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.211 0.789 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.377 0.623 33 H 0.267 0.733 34 H 0.072 0.928 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.871 7.706 -7.946 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.121 4.121 3 N -0.085 5.085 4 O 0.027 5.973 5 C -0.148 4.148 6 C -0.181 4.181 7 C -0.006 4.006 8 N -0.245 5.245 9 C -0.081 4.081 10 C -0.184 4.184 11 C 0.213 3.787 12 O -0.387 6.387 13 C -0.576 4.576 14 H 0.078 0.922 15 C -0.130 4.130 16 N -0.534 5.534 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.068 4.068 22 H 0.102 0.898 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.228 0.772 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.226 0.774 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.129 9.698 -8.112 12.821 hybrid contribution 0.919 -2.902 0.244 3.053 sum 3.047 6.796 -7.868 10.834 Atomic orbital electron populations 1.20098 0.85956 1.03041 1.03596 1.23470 0.99055 0.88168 1.01427 1.73790 0.89502 1.24385 1.20807 1.84769 1.21630 1.22980 1.67934 1.25741 1.00714 0.83673 1.04674 1.21296 0.91907 0.97796 1.07072 1.20452 0.99163 0.87919 0.93086 1.63561 1.22637 1.32935 1.05408 1.22835 0.90837 0.99144 0.95310 1.23270 1.01015 0.92459 1.01661 1.19593 0.85280 0.90338 0.83507 1.86140 1.61071 1.71924 1.19524 1.21489 1.43784 0.91272 1.01048 0.92150 1.24993 0.93698 0.99236 0.95092 1.69729 1.43166 1.36001 1.04464 0.86537 0.78746 0.84629 0.77391 1.20193 1.21141 1.20023 1.23090 0.97903 0.87463 0.98353 0.89847 0.91367 0.90013 0.77213 0.93580 0.90018 0.91918 0.94715 0.92631 0.90437 0.77399 0.92295 0.90998 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.39 36.00 0.37 -0.51 16 2 C 0.04 0.57 7.33 -82.10 -0.60 -0.04 16 3 N -0.38 -5.89 12.07 33.42 0.40 -5.49 16 4 O 0.09 1.27 11.20 17.18 0.19 1.46 16 5 C -0.07 -0.81 12.26 29.74 0.36 -0.45 16 6 C -0.18 -2.52 5.48 -104.42 -0.57 -3.09 16 7 C 0.12 1.82 5.03 -4.98 -0.03 1.80 16 8 N -0.52 -9.61 5.11 -232.37 -1.19 -10.80 16 9 C 0.05 0.88 6.51 -2.83 -0.02 0.86 16 10 C -0.14 -3.24 5.36 -24.90 -0.13 -3.37 16 11 C 0.25 6.11 0.88 -89.38 -0.08 6.03 16 12 O -0.58 -14.92 13.16 -35.23 -0.46 -15.38 16 13 C -0.54 -14.03 8.29 -34.44 -0.29 -14.32 16 14 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 15 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 16 N -0.89 -23.48 10.75 55.43 0.60 -22.88 16 17 Si 0.90 20.23 29.54 -169.99 -5.02 15.20 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.06 1.21 5.84 -2.04 -0.01 1.20 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 25 H 0.21 1.79 8.06 -52.49 -0.42 1.37 16 26 H 0.05 0.65 7.78 -51.93 -0.40 0.24 16 27 H 0.08 1.12 7.98 -51.93 -0.41 0.71 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.03 0.58 7.37 -51.93 -0.38 0.20 16 30 H 0.05 1.26 8.03 -51.93 -0.42 0.84 16 31 H 0.08 1.86 7.53 -51.93 -0.39 1.47 16 32 H 0.38 9.80 7.56 45.56 0.34 10.15 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.05 0.94 7.71 -51.92 -0.40 0.54 16 LS Contribution 294.58 15.07 4.44 4.44 Total: -1.00 -28.27 294.58 -6.27 -34.53 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -4.14 Total: 9.01 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.08 Total: -10.10 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: -0.19 Total: -39.17 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.27 Total: -13.92 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.27 -6.27 -34.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.024 kcal (2) G-P(sol) polarization free energy of solvation -28.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds