Wall clock time and date at job start Mon Mar 30 2020 03:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30174 * 126.80419 * 2 1 4 4 O 1.20924 * 111.60668 * 179.97438 * 3 2 1 5 5 C 1.34039 * 111.56691 * 359.76932 * 4 3 2 6 6 C 1.35455 * 106.44479 * 0.37097 * 5 4 3 7 7 C 1.50695 * 128.00519 * 179.91017 * 6 5 4 8 8 N 1.46900 * 109.46951 * 105.23358 * 7 6 5 9 9 C 1.47445 * 110.99928 * 284.44048 * 8 7 6 10 10 C 1.54320 * 107.23426 * 236.74149 * 9 8 7 11 11 C 1.55145 * 103.17613 * 337.63118 * 10 9 8 12 12 O 1.42904 * 110.98583 * 277.64780 * 11 10 9 13 13 C 1.50698 * 110.99131 * 153.83251 * 11 10 9 14 14 H 1.07998 * 119.99664 * 241.44874 * 13 11 10 15 15 C 1.37881 * 120.00094 * 61.45111 * 13 11 10 16 16 N 1.31514 * 119.99902 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99975 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47226 * 59.99790 * 17 15 13 19 19 H 1.48499 * 109.47156 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47098 * 299.99889 * 17 15 13 21 21 C 1.47849 * 111.00222 * 163.59726 * 8 7 6 22 22 H 1.08994 * 109.47163 * 274.95909 * 1 2 3 23 23 H 1.09005 * 109.47022 * 34.95925 * 1 2 3 24 24 H 1.08999 * 109.47127 * 154.95507 * 1 2 3 25 25 H 1.07998 * 126.77916 * 180.29026 * 5 4 3 26 26 H 1.09001 * 109.47678 * 345.23141 * 7 6 5 27 27 H 1.09002 * 109.47338 * 225.22966 * 7 6 5 28 28 H 1.09002 * 109.89016 * 117.33573 * 9 8 7 29 29 H 1.08998 * 110.02308 * 356.21929 * 9 8 7 30 30 H 1.08998 * 110.70914 * 96.09833 * 10 9 8 31 31 H 1.08997 * 110.70618 * 219.15691 * 10 9 8 32 32 H 0.96696 * 114.00334 * 298.54595 * 12 11 10 33 33 H 0.96999 * 119.99794 * 179.97438 * 16 15 13 34 34 H 1.08995 * 110.37287 * 265.19339 * 21 8 7 35 35 H 1.09007 * 110.37204 * 27.42326 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0059 6 6 2.3539 -1.1321 0.0006 7 6 1.9591 -2.5864 0.0014 8 7 1.4727 -2.9609 1.3360 9 6 2.5924 -3.1115 2.2834 10 6 2.5111 -4.5389 2.8642 11 6 1.0244 -4.9250 2.6467 12 8 0.2003 -4.3942 3.6866 13 6 0.8643 -6.4200 2.5440 14 1 0.4738 -6.8603 1.6385 15 6 1.2164 -7.2256 3.6062 16 7 1.6914 -6.6893 4.7091 17 14 1.0187 -9.0787 3.4786 18 1 1.8429 -9.5881 2.3533 19 1 1.4641 -9.7124 4.7456 20 1 -0.4086 -9.4086 3.2358 21 6 0.7219 -4.2336 1.2885 22 1 -0.3633 0.0888 1.0238 23 1 -0.3633 0.8423 -0.5889 24 1 -0.3633 -0.9310 -0.4350 25 1 4.5339 -1.1535 0.0119 26 1 2.8241 -3.1980 -0.2549 27 1 1.1691 -2.7489 -0.7319 28 1 2.5007 -2.3790 3.0855 29 1 3.5413 -2.9759 1.7644 30 1 3.1688 -5.2152 2.3182 31 1 2.7577 -4.5376 3.9259 32 1 0.4206 -4.7222 4.5691 33 1 1.9388 -7.2560 5.4564 34 1 -0.3464 -4.0405 1.1911 35 1 1.0724 -4.8503 0.4608 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:14 Heat of formation + Delta-G solvation = -5.842664 kcal Electronic energy + Delta-G solvation = -18944.687063 eV Core-core repulsion = 15945.153213 eV Total energy + Delta-G solvation = -2999.533850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.82854 -40.08394 -37.02354 -35.47946 -34.16091 -33.22152 -31.12056 -29.86969 -29.49845 -27.52768 -25.81841 -22.82227 -22.15653 -21.41950 -21.35767 -19.01010 -18.49907 -18.22769 -16.97885 -16.84641 -16.24448 -15.83257 -15.74851 -14.97319 -14.43791 -14.21883 -14.10488 -13.77116 -13.66565 -13.34190 -13.23668 -13.10347 -12.92060 -12.67581 -12.43376 -12.26915 -12.16583 -12.00041 -11.61615 -11.08554 -10.74206 -10.58648 -10.36764 -10.03923 -9.13897 -8.19676 -6.35529 0.62287 1.28641 1.42706 1.44670 1.51526 2.39502 2.44747 3.04973 3.18254 3.40070 3.72151 3.92195 3.99064 4.11611 4.29283 4.33949 4.45876 4.60731 4.63609 4.72840 4.73824 4.80637 4.91678 4.94092 5.03654 5.11050 5.28345 5.32585 5.50272 5.58121 5.82432 5.98105 6.24420 6.29803 6.70771 7.36297 7.38737 7.47051 8.85224 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.045259 B = 0.005088 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.515032 B = 5501.779472 C = 5624.202268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.025 3.975 3 N -0.403 5.403 4 O 0.087 5.913 5 C -0.044 4.044 6 C -0.199 4.199 7 C 0.126 3.874 8 N -0.527 5.527 9 C 0.057 3.943 10 C -0.136 4.136 11 C 0.232 3.768 12 O -0.589 6.589 13 C -0.560 4.560 14 H 0.057 0.943 15 C 0.031 3.969 16 N -0.912 5.912 17 Si 0.958 3.042 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.275 1.275 21 C 0.069 3.931 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.251 0.749 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.370 0.630 33 H 0.268 0.732 34 H 0.065 0.935 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 7.536 -9.193 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.134 4.134 3 N -0.111 5.111 4 O 0.025 5.975 5 C -0.126 4.126 6 C -0.204 4.204 7 C -0.002 4.002 8 N -0.252 5.252 9 C -0.070 4.070 10 C -0.175 4.175 11 C 0.192 3.808 12 O -0.397 6.397 13 C -0.599 4.599 14 H 0.075 0.925 15 C -0.170 4.170 16 N -0.551 5.551 17 Si 0.783 3.217 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.201 1.201 21 C -0.058 4.058 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.267 0.733 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.219 0.781 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.011 9.544 -9.377 13.715 hybrid contribution 0.662 -2.829 0.629 2.973 sum 3.673 6.715 -8.748 11.624 Atomic orbital electron populations 1.20138 0.85117 1.04010 1.03361 1.23848 0.99964 0.88438 1.01107 1.73795 0.90092 1.25101 1.22157 1.84746 1.21114 1.23919 1.67729 1.26448 1.01612 0.82910 1.01587 1.21292 0.92678 0.97270 1.09139 1.20470 1.00177 0.88441 0.91101 1.63466 1.22699 1.31466 1.07539 1.22689 0.92528 0.96347 0.95473 1.23061 0.99653 0.94532 1.00235 1.19905 0.86233 0.90069 0.84560 1.86135 1.61869 1.72071 1.19588 1.21797 1.44158 0.92728 1.01178 0.92509 1.25674 0.93417 1.03010 0.94850 1.69827 1.43380 1.37118 1.04786 0.85623 0.78512 0.80070 0.77468 1.19510 1.20879 1.20081 1.22906 0.98004 0.88327 0.96579 0.90687 0.90031 0.89373 0.73289 0.91916 0.88958 0.93052 0.91667 0.93328 0.92877 0.78146 0.92312 0.91699 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 10.39 71.23 0.74 -0.93 16 2 C 0.03 0.71 7.33 43.58 0.32 1.03 16 3 N -0.40 -11.97 12.07 -49.55 -0.60 -12.57 16 4 O 0.09 2.24 11.20 71.64 0.80 3.05 16 5 C -0.04 -0.93 12.26 67.18 0.82 -0.11 16 6 C -0.20 -5.16 5.48 -19.74 -0.11 -5.27 16 7 C 0.13 3.38 5.03 85.56 0.43 3.81 16 8 N -0.53 -18.48 5.11 -889.08 -4.54 -23.02 16 9 C 0.06 2.09 6.51 86.65 0.56 2.65 16 10 C -0.14 -6.02 5.36 31.78 0.17 -5.85 16 11 C 0.23 11.20 0.88 -9.99 -0.01 11.19 16 12 O -0.59 -30.84 13.16 -148.98 -1.96 -32.80 16 13 C -0.56 -29.23 8.29 25.60 0.21 -29.02 16 14 H 0.06 2.92 7.79 -2.91 -0.02 2.89 16 15 C 0.03 1.61 5.29 84.66 0.45 2.06 16 16 N -0.91 -48.19 10.75 21.45 0.23 -47.96 16 17 Si 0.96 41.17 29.54 68.60 2.03 43.20 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.07 2.78 5.84 86.94 0.51 3.29 16 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.09 1.98 8.07 -2.39 -0.02 1.96 16 25 H 0.25 3.01 8.06 -2.91 -0.02 2.99 16 26 H 0.06 1.51 7.78 -2.39 -0.02 1.49 16 27 H 0.09 2.28 7.98 -2.39 -0.02 2.26 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.96 7.37 -2.39 -0.02 1.94 16 30 H 0.05 2.17 8.03 -2.39 -0.02 2.15 16 31 H 0.05 2.58 7.53 -2.39 -0.02 2.56 16 32 H 0.37 19.82 7.56 -74.06 -0.56 19.26 16 33 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 34 H 0.06 2.67 8.14 -2.39 -0.02 2.66 16 35 H 0.06 2.18 7.71 -2.38 -0.02 2.16 16 Total: -1.00 -60.04 294.58 0.59 -59.45 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.54 Total: 27.79 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 4.10 Total: -17.13 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -4.91 Total: -83.55 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -1.16 Total: -29.75 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -60.04 0.59 -59.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.604 kcal (2) G-P(sol) polarization free energy of solvation -60.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds